Wall clock time and date at job start Tue Mar 31 2020 05:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47320 * 2 1 4 4 C 1.53001 * 109.46893 * 239.99710 * 2 1 3 5 5 C 1.50704 * 109.47093 * 60.00586 * 4 2 1 6 6 O 1.20833 * 119.99827 * 359.97438 * 5 4 2 7 7 O 1.34225 * 120.00415 * 179.97438 * 5 4 2 8 8 C 1.53005 * 109.46889 * 120.00233 * 2 1 3 9 9 C 1.50696 * 109.47160 * 299.99698 * 8 2 1 10 10 O 1.21284 * 119.99855 * 0.02562 * 9 8 2 11 11 N 1.34773 * 120.00197 * 180.02562 * 9 8 2 12 12 C 1.47581 * 134.49354 * 180.02562 * 11 9 8 13 13 C 1.53945 * 86.11895 * 155.35947 * 12 11 9 14 14 O 1.42904 * 113.73986 * 269.15696 * 13 12 11 15 15 C 1.50694 * 113.74220 * 137.95139 * 13 12 11 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 13 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47582 * 134.48982 * 359.97438 * 11 9 8 24 24 H 1.08998 * 109.47173 * 299.99887 * 1 2 3 25 25 H 1.09000 * 109.46863 * 60.00119 * 1 2 3 26 26 H 1.09001 * 109.47293 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47511 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46923 * 300.00297 * 3 2 1 29 29 H 1.08998 * 109.46906 * 59.99949 * 3 2 1 30 30 H 1.09008 * 109.46834 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47451 * 300.00271 * 4 2 1 32 32 H 0.96692 * 117.00694 * 180.02562 * 7 5 4 33 33 H 1.08994 * 109.46740 * 179.97438 * 8 2 1 34 34 H 1.09001 * 109.47279 * 59.99836 * 8 2 1 35 35 H 1.09001 * 113.77016 * 41.05438 * 12 11 9 36 36 H 1.09005 * 113.86980 * 269.67513 * 12 11 9 37 37 H 0.96699 * 113.99284 * 178.07513 * 14 13 12 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 39 39 H 1.09002 * 113.76615 * 90.34214 * 23 11 9 40 40 H 1.08991 * 113.77327 * 318.94082 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 8 0.8427 0.9714 -2.3688 7 8 1.8623 -0.4691 -3.6989 8 6 2.0400 -0.7213 1.2493 9 6 1.5377 -0.0109 2.4797 10 8 0.8401 0.9749 2.3684 11 7 1.8637 -0.4711 3.7038 12 6 1.5612 -0.0439 5.0837 13 6 1.8144 -1.5094 5.4814 14 8 0.6403 -2.3237 5.4551 15 6 2.6087 -1.6646 6.7526 16 1 2.9418 -0.7899 7.2915 17 6 2.9102 -2.9233 7.2278 18 7 2.5041 -3.9885 6.5719 19 14 3.8953 -3.1156 8.8032 20 1 4.0831 -4.5593 9.0965 21 1 5.2210 -2.4666 8.6404 22 1 3.1646 -2.4740 9.9254 23 6 2.6656 -1.6052 4.2026 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 3.1300 -0.7209 -1.2494 31 1 1.6766 -1.7490 -1.2492 32 1 1.5170 0.0200 -4.4581 33 1 3.1299 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2493 35 1 0.5300 0.2786 5.2277 36 1 2.2874 0.6555 5.4981 37 1 0.8003 -3.2515 5.6758 38 1 2.7166 -4.8740 6.9061 39 1 3.7177 -1.3652 4.3563 40 1 2.5159 -2.5287 3.6436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609673066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:19 Heat of formation + Delta-G solvation = -144.791312 kcal Electronic energy + Delta-G solvation = -23331.118378 eV Core-core repulsion = 19726.309311 eV Total energy + Delta-G solvation = -3604.809067 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.77400 -39.62637 -38.04750 -36.57544 -35.36828 -33.93880 -32.21501 -29.76219 -28.73001 -27.18001 -26.97307 -25.26845 -24.97433 -22.36505 -20.23885 -18.96746 -18.33175 -17.92974 -17.39109 -16.56616 -16.27496 -16.10024 -15.36271 -15.12947 -14.87831 -14.23599 -14.10158 -13.87775 -13.58657 -13.18169 -12.70376 -12.58455 -12.34522 -12.12986 -11.99190 -11.91280 -11.55750 -11.27522 -11.12355 -11.06047 -11.01298 -10.90352 -10.84812 -10.55315 -10.53696 -10.30081 -10.02803 -9.53640 -9.00158 -8.76086 -8.39187 -7.79944 -6.41034 -4.51266 2.09174 2.87679 3.14890 3.20912 3.21745 3.24511 3.60940 4.17149 4.58489 4.81943 4.82697 4.91633 5.10427 5.35029 5.38458 5.44971 5.55311 5.62401 5.75789 5.87364 5.97116 6.13244 6.19979 6.21616 6.25259 6.28294 6.37829 6.48164 6.59354 6.64295 6.69619 6.77709 6.87261 7.09469 7.61579 7.79431 7.81015 8.51383 8.53501 8.81528 9.20004 9.44663 10.65462 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036585 B = 0.003461 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.159924 B = 8089.270699 C = 8342.820507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.031 4.031 3 C -0.165 4.165 4 C -0.107 4.107 5 C 0.478 3.522 6 O -0.500 6.500 7 O -0.522 6.522 8 C -0.126 4.126 9 C 0.531 3.469 10 O -0.554 6.554 11 N -0.633 5.633 12 C 0.111 3.889 13 C 0.239 3.761 14 O -0.573 6.573 15 C -0.538 4.538 16 H 0.070 0.930 17 C 0.073 3.927 18 N -0.899 5.899 19 Si 0.908 3.092 20 H -0.285 1.285 21 H -0.274 1.274 22 H -0.273 1.273 23 C 0.076 3.924 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.407 0.593 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.392 0.608 38 H 0.274 0.726 39 H 0.081 0.919 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.342 2.201 -14.070 14.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.031 4.031 3 C -0.222 4.222 4 C -0.145 4.145 5 C 0.321 3.679 6 O -0.388 6.388 7 O -0.335 6.335 8 C -0.166 4.166 9 C 0.321 3.679 10 O -0.434 6.434 11 N -0.366 5.366 12 C -0.011 4.011 13 C 0.197 3.803 14 O -0.385 6.385 15 C -0.576 4.576 16 H 0.089 0.911 17 C -0.130 4.130 18 N -0.539 5.539 19 Si 0.735 3.265 20 H -0.210 1.210 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.047 4.047 24 H 0.107 0.893 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.265 0.735 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.248 0.752 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.612 3.174 -14.098 14.541 hybrid contribution 0.805 -0.620 0.356 1.077 sum 2.417 2.555 -13.742 14.185 Atomic orbital electron populations 1.22336 0.93372 1.01302 1.05260 1.20052 0.97291 0.95705 0.90061 1.22331 0.99110 0.95483 1.05283 1.21548 1.03117 1.00708 0.89114 1.23549 0.77174 0.82655 0.84529 1.90649 1.35411 1.26089 1.86651 1.84555 1.72570 1.59258 1.17079 1.21625 1.02009 1.00527 0.92449 1.20007 0.80646 0.83946 0.83334 1.90520 1.39793 1.27311 1.85822 1.50201 1.50726 1.31150 1.04510 1.23430 1.00651 0.98806 0.78211 1.19828 0.83220 0.86266 0.90984 1.86062 1.33195 1.26626 1.92665 1.21491 1.34234 0.93191 1.08654 0.91141 1.25064 0.95011 0.95479 0.97440 1.69310 1.46410 0.98594 1.39612 0.86388 0.80243 0.77219 0.82668 1.21006 1.19905 1.19866 1.24299 0.96541 0.87269 0.96567 0.89301 0.91022 0.94113 0.94258 0.90974 0.89374 0.87704 0.87614 0.73480 0.89323 0.89096 0.91229 0.89804 0.75227 0.91603 0.90095 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 7.88 37.16 0.29 -2.24 16 2 C -0.03 -0.41 0.51 -154.51 -0.08 -0.49 16 3 C -0.17 -2.43 7.88 37.16 0.29 -2.13 16 4 C -0.11 -1.09 4.88 -27.88 -0.14 -1.23 16 5 C 0.48 5.21 7.74 36.01 0.28 5.49 16 6 O -0.50 -6.90 12.11 -18.76 -0.23 -7.13 16 7 O -0.52 -4.31 13.42 -39.24 -0.53 -4.83 16 8 C -0.13 -1.83 4.52 -27.88 -0.13 -1.95 16 9 C 0.53 10.13 7.47 -10.99 -0.08 10.05 16 10 O -0.55 -11.78 12.08 5.55 0.07 -11.72 16 11 N -0.63 -12.87 3.61 -178.32 -0.64 -13.51 16 12 C 0.11 2.38 8.23 -2.97 -0.02 2.36 16 13 C 0.24 5.59 1.44 -90.86 -0.13 5.46 16 14 O -0.57 -14.48 13.48 -35.23 -0.48 -14.96 16 15 C -0.54 -13.22 8.62 -34.44 -0.30 -13.52 16 16 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 17 C 0.07 1.77 5.40 -17.82 -0.10 1.67 16 18 N -0.90 -22.24 11.09 55.43 0.61 -21.63 16 19 Si 0.91 19.12 29.54 -169.99 -5.02 14.09 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 C 0.08 1.57 8.00 -2.99 -0.02 1.54 16 24 H 0.09 1.62 5.51 -51.93 -0.29 1.34 16 25 H 0.07 1.10 5.52 -51.93 -0.29 0.82 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 1.08 5.52 -51.93 -0.29 0.80 16 29 H 0.09 1.54 5.51 -51.93 -0.29 1.26 16 30 H 0.10 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.41 1.69 9.10 45.56 0.41 2.11 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.08 1.66 8.09 -51.93 -0.42 1.24 16 37 H 0.39 9.98 6.46 45.56 0.29 10.28 16 38 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 39 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 324.27 15.07 4.89 4.89 Total: -1.00 -29.26 324.27 -5.66 -34.92 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -4.20 Total: 14.88 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -0.13 Total: 4.99 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.03 Total: -35.14 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -1.16 Total: -38.64 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.26 -5.66 -34.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609673066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.868 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds