Wall clock time and date at job start Tue Mar 31 2020 05:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47320 * 2 1 4 4 C 1.53001 * 109.46893 * 239.99710 * 2 1 3 5 5 C 1.50704 * 109.47093 * 60.00586 * 4 2 1 6 6 O 1.20833 * 119.99827 * 359.97438 * 5 4 2 7 7 O 1.34225 * 120.00415 * 179.97438 * 5 4 2 8 8 C 1.53005 * 109.46889 * 120.00233 * 2 1 3 9 9 C 1.50696 * 109.47160 * 299.99698 * 8 2 1 10 10 O 1.21284 * 119.99855 * 0.02562 * 9 8 2 11 11 N 1.34773 * 120.00197 * 180.02562 * 9 8 2 12 12 C 1.47581 * 134.49354 * 180.02562 * 11 9 8 13 13 C 1.53945 * 86.11895 * 155.35947 * 12 11 9 14 14 O 1.42904 * 113.73986 * 269.15696 * 13 12 11 15 15 C 1.50694 * 113.74220 * 137.95139 * 13 12 11 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 13 12 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47582 * 134.48982 * 359.97438 * 11 9 8 24 24 H 1.08998 * 109.47173 * 299.99887 * 1 2 3 25 25 H 1.09000 * 109.46863 * 60.00119 * 1 2 3 26 26 H 1.09001 * 109.47293 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47511 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46923 * 300.00297 * 3 2 1 29 29 H 1.08998 * 109.46906 * 59.99949 * 3 2 1 30 30 H 1.09008 * 109.46834 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47451 * 300.00271 * 4 2 1 32 32 H 0.96692 * 117.00694 * 180.02562 * 7 5 4 33 33 H 1.08994 * 109.46740 * 179.97438 * 8 2 1 34 34 H 1.09001 * 109.47279 * 59.99836 * 8 2 1 35 35 H 1.09001 * 113.77016 * 41.05438 * 12 11 9 36 36 H 1.09005 * 113.86980 * 269.67513 * 12 11 9 37 37 H 0.96699 * 113.99284 * 178.07513 * 14 13 12 38 38 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 39 39 H 1.09002 * 113.76615 * 90.34214 * 23 11 9 40 40 H 1.08991 * 113.77327 * 318.94082 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 8 0.8427 0.9714 -2.3688 7 8 1.8623 -0.4691 -3.6989 8 6 2.0400 -0.7213 1.2493 9 6 1.5377 -0.0109 2.4797 10 8 0.8401 0.9749 2.3684 11 7 1.8637 -0.4711 3.7038 12 6 1.5612 -0.0439 5.0837 13 6 1.8144 -1.5094 5.4814 14 8 0.6403 -2.3237 5.4551 15 6 2.6087 -1.6646 6.7526 16 1 2.9418 -0.7899 7.2915 17 6 2.9102 -2.9233 7.2278 18 7 2.5041 -3.9885 6.5719 19 14 3.8953 -3.1156 8.8032 20 1 4.0831 -4.5593 9.0965 21 1 5.2210 -2.4666 8.6404 22 1 3.1646 -2.4740 9.9254 23 6 2.6656 -1.6052 4.2026 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 3.1300 -0.7209 -1.2494 31 1 1.6766 -1.7490 -1.2492 32 1 1.5170 0.0200 -4.4581 33 1 3.1299 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2493 35 1 0.5300 0.2786 5.2277 36 1 2.2874 0.6555 5.4981 37 1 0.8003 -3.2515 5.6758 38 1 2.7166 -4.8740 6.9061 39 1 3.7177 -1.3652 4.3563 40 1 2.5159 -2.5287 3.6436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609673066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:18 Heat of formation + Delta-G solvation = -166.263742 kcal Electronic energy + Delta-G solvation = -23332.049493 eV Core-core repulsion = 19726.309311 eV Total energy + Delta-G solvation = -3605.740182 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.75759 -41.04339 -39.51092 -37.57133 -36.44719 -35.73779 -34.10401 -31.19256 -29.77361 -28.64059 -28.15899 -26.94200 -26.64156 -23.27340 -21.83313 -20.23055 -19.62295 -19.19198 -18.87126 -17.90877 -17.36036 -17.11761 -16.92779 -16.57872 -16.40218 -15.86742 -15.40262 -15.17462 -14.79484 -14.55268 -14.30918 -13.91967 -13.59386 -13.51746 -13.36355 -13.11529 -12.94143 -12.75627 -12.74279 -12.31454 -12.25449 -12.22079 -12.15607 -12.11332 -11.91808 -11.62220 -11.28393 -11.03977 -10.70161 -10.49121 -10.11451 -9.45336 -8.24292 -6.40970 1.30088 1.49161 1.51788 1.58445 1.75265 1.95041 2.30512 2.43043 2.98471 3.46020 3.74121 3.84876 3.88976 3.96829 4.23716 4.35152 4.48984 4.54018 4.60265 4.64256 4.67107 4.68571 4.80384 4.86126 4.96027 4.99897 5.01536 5.09129 5.13818 5.26555 5.31699 5.54321 5.56562 5.75320 5.84552 5.96568 6.63734 6.97704 7.10386 7.28931 7.33869 7.50688 8.81114 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036585 B = 0.003461 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.159924 B = 8089.270699 C = 8342.820507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.028 4.028 3 C -0.160 4.160 4 C -0.104 4.104 5 C 0.482 3.518 6 O -0.538 6.538 7 O -0.514 6.514 8 C -0.118 4.118 9 C 0.520 3.480 10 O -0.580 6.580 11 N -0.636 5.636 12 C 0.109 3.891 13 C 0.217 3.783 14 O -0.588 6.588 15 C -0.558 4.558 16 H 0.069 0.931 17 C 0.035 3.965 18 N -0.915 5.915 19 Si 0.966 3.034 20 H -0.282 1.282 21 H -0.267 1.267 22 H -0.278 1.278 23 C 0.093 3.907 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.425 0.575 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.388 0.612 38 H 0.276 0.724 39 H 0.093 0.907 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.201 1.091 -15.277 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.028 4.028 3 C -0.217 4.217 4 C -0.141 4.141 5 C 0.327 3.673 6 O -0.428 6.428 7 O -0.328 6.328 8 C -0.157 4.157 9 C 0.313 3.687 10 O -0.462 6.462 11 N -0.370 5.370 12 C -0.014 4.014 13 C 0.176 3.824 14 O -0.400 6.400 15 C -0.596 4.596 16 H 0.087 0.913 17 C -0.166 4.166 18 N -0.555 5.555 19 Si 0.792 3.208 20 H -0.207 1.207 21 H -0.192 1.192 22 H -0.203 1.203 23 C -0.029 4.029 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.286 0.714 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.243 0.757 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.479 2.063 -15.346 15.871 hybrid contribution 0.156 -0.229 0.689 0.743 sum 3.635 1.834 -14.658 15.213 Atomic orbital electron populations 1.22248 0.95150 1.01307 1.03155 1.19985 0.95847 0.95377 0.91628 1.22232 1.00177 0.96067 1.03209 1.21507 1.04755 1.00989 0.86838 1.23641 0.76317 0.81934 0.85421 1.90653 1.37189 1.27781 1.87223 1.84503 1.72147 1.59156 1.17000 1.21679 1.03586 1.00492 0.89988 1.20947 0.79938 0.83822 0.84029 1.90539 1.40798 1.28695 1.86196 1.50244 1.51034 1.31188 1.04535 1.23391 1.00148 0.98200 0.79655 1.20121 0.83221 0.86869 0.92164 1.86049 1.34630 1.26553 1.92806 1.21722 1.34799 0.93520 1.09577 0.91257 1.25703 0.95793 0.95191 0.99881 1.69367 1.46780 0.98834 1.40547 0.85477 0.79093 0.77065 0.79196 1.20736 1.19186 1.20346 1.24059 0.96529 0.87493 0.94835 0.92949 0.91449 0.93024 0.92354 0.91567 0.92805 0.84869 0.85331 0.71351 0.86518 0.87556 0.92871 0.88431 0.75707 0.91410 0.88934 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 7.88 71.98 0.57 -4.31 16 2 C -0.03 -0.70 0.51 -52.18 -0.03 -0.73 16 3 C -0.16 -4.55 7.88 71.98 0.57 -3.98 16 4 C -0.10 -1.73 4.88 29.85 0.15 -1.58 16 5 C 0.48 9.25 7.74 71.24 0.55 9.80 16 6 O -0.54 -14.21 12.11 21.94 0.27 -13.95 16 7 O -0.51 -6.82 13.42 -51.36 -0.69 -7.51 16 8 C -0.12 -3.11 4.52 29.85 0.13 -2.98 16 9 C 0.52 19.54 7.47 87.66 0.65 20.19 16 10 O -0.58 -25.21 12.08 -3.04 -0.04 -25.24 16 11 N -0.64 -25.50 3.61 -840.31 -3.03 -28.53 16 12 C 0.11 4.71 8.23 86.48 0.71 5.42 16 13 C 0.22 10.16 1.44 -10.89 -0.02 10.14 16 14 O -0.59 -30.07 13.48 -148.98 -2.01 -32.08 16 15 C -0.56 -27.28 8.62 25.60 0.22 -27.06 16 16 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 17 C 0.04 1.68 5.40 84.66 0.46 2.14 16 18 N -0.91 -44.68 11.09 21.45 0.24 -44.44 16 19 Si 0.97 38.48 29.54 68.60 2.03 40.51 16 20 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 23 C 0.09 3.72 8.00 86.47 0.69 4.42 16 24 H 0.05 1.97 5.51 -2.39 -0.01 1.95 16 25 H 0.07 2.08 5.52 -2.39 -0.01 2.07 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.96 5.52 -2.39 -0.01 1.95 16 29 H 0.05 1.91 5.51 -2.39 -0.01 1.90 16 30 H 0.13 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.43 2.34 9.10 -74.06 -0.67 1.67 16 33 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.10 3.88 8.09 -2.38 -0.02 3.86 16 37 H 0.39 19.98 6.46 -74.06 -0.48 19.50 16 38 H 0.28 12.81 8.31 -92.71 -0.77 12.04 16 39 H 0.09 3.46 8.09 -2.39 -0.02 3.44 16 40 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -63.83 324.27 1.35 -62.48 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: -0.07 Total: 37.29 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 4.66 Total: 11.47 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -2.79 Total: -72.98 kcal Atomic # 8 Polarization: -76.31 SS G_CDS: -2.47 Total: -78.78 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -63.83 1.35 -62.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609673066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.783 kcal (2) G-P(sol) polarization free energy of solvation -63.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds