Wall clock time and date at job start Tue Mar 31 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47436 * 2 1 4 4 H 1.09006 * 109.48910 * 304.96759 * 3 2 1 5 5 C 1.53088 * 109.48350 * 184.94179 * 3 2 1 6 6 C 1.53174 * 109.16271 * 182.40541 * 5 3 2 7 7 H 1.08997 * 109.62149 * 297.06487 * 6 5 3 8 8 C 1.50700 * 109.54224 * 176.84512 * 6 5 3 9 9 O 1.21286 * 120.00209 * 334.83830 * 8 6 5 10 10 N 1.34784 * 120.00062 * 155.11454 * 8 6 5 11 11 C 1.37095 * 120.00096 * 176.18860 * 10 8 6 12 12 H 1.07993 * 120.00271 * 321.60674 * 11 10 8 13 13 C 1.38951 * 119.99932 * 141.60037 * 11 10 8 14 14 N 1.31408 * 120.00170 * 157.64020 * 13 11 10 15 15 Si 1.86806 * 119.99911 * 337.63965 * 13 11 10 16 16 H 1.48499 * 109.47029 * 91.60126 * 15 13 11 17 17 H 1.48501 * 109.47262 * 211.59841 * 15 13 11 18 18 H 1.48502 * 109.47157 * 331.60175 * 15 13 11 19 19 C 1.46497 * 119.99904 * 356.19097 * 10 8 6 20 20 C 1.50697 * 109.47296 * 94.54880 * 19 10 8 21 21 O 1.20823 * 119.99830 * 0.02562 * 20 19 10 22 22 O 1.34234 * 120.00171 * 179.97438 * 20 19 10 23 23 C 1.53175 * 109.03833 * 56.98064 * 6 5 3 24 24 C 1.53093 * 109.16091 * 303.01963 * 23 6 5 25 25 O 1.42898 * 109.48088 * 64.99197 * 3 2 1 26 26 H 1.08996 * 109.47820 * 300.00512 * 1 2 3 27 27 H 1.09004 * 109.47067 * 60.00468 * 1 2 3 28 28 H 1.09000 * 109.47572 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47375 * 239.99381 * 2 1 3 30 30 H 1.09004 * 109.47067 * 119.99532 * 2 1 3 31 31 H 1.09001 * 109.52370 * 62.49961 * 5 3 2 32 32 H 1.09002 * 109.51889 * 302.31231 * 5 3 2 33 33 H 0.96999 * 120.00194 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.47331 * 214.55480 * 19 10 8 35 35 H 1.09001 * 109.47342 * 334.54994 * 19 10 8 36 36 H 0.96697 * 116.99815 * 180.02562 * 22 20 19 37 37 H 1.08997 * 109.52549 * 62.92109 * 23 6 5 38 38 H 1.09005 * 109.52361 * 183.04881 * 23 6 5 39 39 H 1.09006 * 109.48040 * 177.59553 * 24 23 6 40 40 H 1.09000 * 109.47685 * 297.60857 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9817 -0.8421 5 6 3.5658 1.4445 -0.1243 6 6 4.0733 2.8884 -0.0631 7 1 3.6814 3.4504 -0.9108 8 6 5.5797 2.8955 -0.1069 9 8 6.2020 1.9256 0.2712 10 7 6.2356 3.9820 -0.5609 11 6 7.6056 4.0191 -0.5280 12 1 8.1372 3.5966 0.3118 13 6 8.3103 4.6002 -1.5751 14 7 9.5346 5.0364 -1.3810 15 14 7.5172 4.7615 -3.2587 16 1 6.8355 6.0769 -3.3608 17 1 8.5618 4.6626 -4.3095 18 1 6.5237 3.6734 -3.4442 19 6 5.4844 5.1232 -1.0897 20 6 5.2769 6.1384 0.0045 21 8 5.7123 5.9303 1.1122 22 8 4.6094 7.2744 -0.2517 23 6 3.5957 3.5310 1.2427 24 6 2.0686 3.4484 1.3142 25 8 1.6619 2.0816 1.2209 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 3.8544 0.9970 -1.0754 32 1 3.9988 0.8711 0.6954 33 1 10.0264 5.4424 -2.1119 34 1 6.0434 5.5789 -1.9070 35 1 4.5166 4.7823 -1.4572 36 1 4.5018 7.8954 0.4817 37 1 4.0292 2.9998 2.0900 38 1 3.9066 4.5754 1.2698 39 1 1.7259 3.8659 2.2610 40 1 1.6351 4.0140 0.4895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609947771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:15 Heat of formation + Delta-G solvation = -165.550335 kcal Electronic energy + Delta-G solvation = -24275.882706 eV Core-core repulsion = 20670.173460 eV Total energy + Delta-G solvation = -3605.709246 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35727 -39.45236 -38.18350 -35.77312 -34.86500 -34.02493 -33.36217 -32.07655 -29.74679 -28.10887 -26.51787 -24.51064 -23.46746 -21.79166 -21.59018 -20.51293 -18.58115 -17.77702 -17.36587 -16.72287 -16.37409 -16.15376 -16.00920 -15.23503 -15.03062 -14.54080 -14.26446 -13.78351 -13.66991 -13.57459 -13.29111 -12.86241 -12.83917 -12.57555 -12.24127 -12.07633 -11.78214 -11.69618 -11.24278 -11.05299 -11.01621 -10.98019 -10.88210 -10.60858 -10.43071 -10.14778 -10.10712 -10.02372 -9.52193 -9.16594 -8.54435 -7.97845 -6.48499 -4.07261 2.65581 2.88096 3.08722 3.14003 3.18712 3.71564 3.82199 4.01090 4.20534 4.69083 4.88864 4.93806 5.01454 5.04734 5.11332 5.16735 5.27039 5.34733 5.42829 5.50608 5.55592 5.64917 5.75307 5.76764 5.82902 5.87193 5.91854 6.03986 6.06892 6.16962 6.27695 6.38237 6.54431 6.85503 7.31112 7.39641 8.17491 8.29754 8.39754 8.84136 9.17278 9.58881 10.63545 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019997 B = 0.005901 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.894287 B = 4743.868641 C = 5343.133541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.055 0.945 5 C -0.129 4.129 6 C -0.113 4.113 7 H 0.080 0.920 8 C 0.485 3.515 9 O -0.545 6.545 10 N -0.450 5.450 11 C -0.311 4.311 12 H 0.107 0.893 13 C 0.060 3.940 14 N -0.855 5.855 15 Si 0.860 3.140 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.258 1.258 19 C 0.092 3.908 20 C 0.456 3.544 21 O -0.484 6.484 22 O -0.528 6.528 23 C -0.146 4.146 24 C 0.067 3.933 25 O -0.378 6.378 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.275 0.725 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.401 0.599 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.336 -0.196 -1.224 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.033 3.967 4 H 0.073 0.927 5 C -0.167 4.167 6 C -0.134 4.134 7 H 0.098 0.902 8 C 0.274 3.726 9 O -0.424 6.424 10 N -0.172 5.172 11 C -0.438 4.438 12 H 0.125 0.875 13 C -0.147 4.147 14 N -0.490 5.490 15 Si 0.686 3.314 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.182 1.182 19 C -0.034 4.034 20 C 0.295 3.705 21 O -0.369 6.369 22 O -0.340 6.340 23 C -0.184 4.184 24 C -0.010 4.010 25 O -0.297 6.297 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.259 0.741 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.713 -1.075 -0.958 16.775 hybrid contribution 0.026 1.102 -0.725 1.319 sum -16.687 0.027 -1.683 16.772 Atomic orbital electron populations 1.21714 0.95493 1.01261 1.02096 1.21534 0.96312 0.94530 1.02966 1.22179 0.93750 0.93876 0.86893 0.92660 1.22036 0.94806 0.95697 1.04174 1.21425 0.94994 0.98171 0.98846 0.90200 1.20112 0.88159 0.82761 0.81575 1.90569 1.68908 1.33744 1.49156 1.43412 1.06470 1.09695 1.57670 1.19020 0.77930 1.40272 1.06559 0.87515 1.25379 0.95518 0.95767 0.97994 1.69759 1.11721 1.34848 1.32707 0.87248 0.80203 0.78613 0.85303 1.19725 1.20548 1.18241 1.21705 0.99631 0.87747 0.94321 1.24527 0.74150 0.81211 0.90607 1.90721 1.44962 1.76689 1.24545 1.84579 1.71169 1.31292 1.46916 1.22188 0.96311 1.02159 0.97736 1.22541 0.93593 0.83116 1.01780 1.87887 1.78410 1.24650 1.38797 0.92018 0.93096 0.92972 0.90591 0.90961 0.90698 0.89615 0.91407 0.87331 0.87523 0.74136 0.90229 0.90510 0.88853 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.81 37.15 0.36 -1.05 16 2 C -0.12 -1.27 5.64 -26.74 -0.15 -1.42 16 3 C 0.09 1.16 2.64 -26.69 -0.07 1.09 16 4 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 5 C -0.13 -2.02 4.30 -26.60 -0.11 -2.13 16 6 C -0.11 -1.94 1.97 -91.59 -0.18 -2.12 16 7 H 0.08 1.19 5.95 -51.93 -0.31 0.88 16 8 C 0.49 11.19 6.74 -10.98 -0.07 11.12 16 9 O -0.54 -14.63 15.95 5.55 0.09 -14.54 16 10 N -0.45 -10.80 1.68 -116.10 -0.19 -10.99 16 11 C -0.31 -8.80 9.20 -14.93 -0.14 -8.93 16 12 H 0.11 3.46 7.96 -52.49 -0.42 3.04 16 13 C 0.06 1.63 5.32 -17.47 -0.09 1.54 16 14 N -0.85 -24.53 13.96 55.50 0.77 -23.76 16 15 Si 0.86 19.34 25.24 -169.99 -4.29 15.05 16 16 H -0.27 -5.54 6.50 56.52 0.37 -5.17 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 18 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 19 C 0.09 1.80 4.82 -5.20 -0.03 1.78 16 20 C 0.46 8.53 7.01 36.00 0.25 8.78 16 21 O -0.48 -10.70 15.88 -18.75 -0.30 -11.00 16 22 O -0.53 -7.46 13.42 -39.27 -0.53 -7.98 16 23 C -0.15 -2.33 5.40 -26.59 -0.14 -2.47 16 24 C 0.07 0.85 6.84 37.21 0.25 1.10 16 25 O -0.38 -5.25 9.94 -35.23 -0.35 -5.60 16 26 H 0.06 0.63 7.82 -51.93 -0.41 0.23 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.51 7.77 -51.93 -0.40 1.10 16 33 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.11 2.22 3.08 -51.93 -0.16 2.06 16 35 H 0.11 1.65 5.72 -51.93 -0.30 1.35 16 36 H 0.40 3.82 9.10 45.56 0.41 4.24 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.08 1.27 5.17 -51.93 -0.27 1.00 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -33.89 320.65 -4.90 -38.79 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.82 Total: 7.92 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -0.12 Total: 7.28 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.58 Total: -34.75 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -1.09 Total: -39.13 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.29 Total: 15.05 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.89 -4.90 -38.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609947771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.759 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds