Wall clock time and date at job start Tue Mar 31 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47436 * 2 1 4 4 H 1.09006 * 109.48910 * 304.96759 * 3 2 1 5 5 C 1.53088 * 109.48350 * 184.94179 * 3 2 1 6 6 C 1.53174 * 109.16271 * 182.40541 * 5 3 2 7 7 H 1.08997 * 109.62149 * 297.06487 * 6 5 3 8 8 C 1.50700 * 109.54224 * 176.84512 * 6 5 3 9 9 O 1.21286 * 120.00209 * 334.83830 * 8 6 5 10 10 N 1.34784 * 120.00062 * 155.11454 * 8 6 5 11 11 C 1.37095 * 120.00096 * 176.18860 * 10 8 6 12 12 H 1.07993 * 120.00271 * 321.60674 * 11 10 8 13 13 C 1.38951 * 119.99932 * 141.60037 * 11 10 8 14 14 N 1.31408 * 120.00170 * 157.64020 * 13 11 10 15 15 Si 1.86806 * 119.99911 * 337.63965 * 13 11 10 16 16 H 1.48499 * 109.47029 * 91.60126 * 15 13 11 17 17 H 1.48501 * 109.47262 * 211.59841 * 15 13 11 18 18 H 1.48502 * 109.47157 * 331.60175 * 15 13 11 19 19 C 1.46497 * 119.99904 * 356.19097 * 10 8 6 20 20 C 1.50697 * 109.47296 * 94.54880 * 19 10 8 21 21 O 1.20823 * 119.99830 * 0.02562 * 20 19 10 22 22 O 1.34234 * 120.00171 * 179.97438 * 20 19 10 23 23 C 1.53175 * 109.03833 * 56.98064 * 6 5 3 24 24 C 1.53093 * 109.16091 * 303.01963 * 23 6 5 25 25 O 1.42898 * 109.48088 * 64.99197 * 3 2 1 26 26 H 1.08996 * 109.47820 * 300.00512 * 1 2 3 27 27 H 1.09004 * 109.47067 * 60.00468 * 1 2 3 28 28 H 1.09000 * 109.47572 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47375 * 239.99381 * 2 1 3 30 30 H 1.09004 * 109.47067 * 119.99532 * 2 1 3 31 31 H 1.09001 * 109.52370 * 62.49961 * 5 3 2 32 32 H 1.09002 * 109.51889 * 302.31231 * 5 3 2 33 33 H 0.96999 * 120.00194 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.47331 * 214.55480 * 19 10 8 35 35 H 1.09001 * 109.47342 * 334.54994 * 19 10 8 36 36 H 0.96697 * 116.99815 * 180.02562 * 22 20 19 37 37 H 1.08997 * 109.52549 * 62.92109 * 23 6 5 38 38 H 1.09005 * 109.52361 * 183.04881 * 23 6 5 39 39 H 1.09006 * 109.48040 * 177.59553 * 24 23 6 40 40 H 1.09000 * 109.47685 * 297.60857 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9817 -0.8421 5 6 3.5658 1.4445 -0.1243 6 6 4.0733 2.8884 -0.0631 7 1 3.6814 3.4504 -0.9108 8 6 5.5797 2.8955 -0.1069 9 8 6.2020 1.9256 0.2712 10 7 6.2356 3.9820 -0.5609 11 6 7.6056 4.0191 -0.5280 12 1 8.1372 3.5966 0.3118 13 6 8.3103 4.6002 -1.5751 14 7 9.5346 5.0364 -1.3810 15 14 7.5172 4.7615 -3.2587 16 1 6.8355 6.0769 -3.3608 17 1 8.5618 4.6626 -4.3095 18 1 6.5237 3.6734 -3.4442 19 6 5.4844 5.1232 -1.0897 20 6 5.2769 6.1384 0.0045 21 8 5.7123 5.9303 1.1122 22 8 4.6094 7.2744 -0.2517 23 6 3.5957 3.5310 1.2427 24 6 2.0686 3.4484 1.3142 25 8 1.6619 2.0816 1.2209 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 3.8544 0.9970 -1.0754 32 1 3.9988 0.8711 0.6954 33 1 10.0264 5.4424 -2.1119 34 1 6.0434 5.5789 -1.9070 35 1 4.5166 4.7823 -1.4572 36 1 4.5018 7.8954 0.4817 37 1 4.0292 2.9998 2.0900 38 1 3.9066 4.5754 1.2698 39 1 1.7259 3.8659 2.2610 40 1 1.6351 4.0140 0.4895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609947771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:14 Heat of formation + Delta-G solvation = -191.468980 kcal Electronic energy + Delta-G solvation = -24277.006623 eV Core-core repulsion = 20670.173460 eV Total energy + Delta-G solvation = -3606.833163 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.87482 -40.77664 -39.66715 -37.25750 -36.63255 -35.03841 -34.70809 -34.02783 -30.76100 -29.77771 -28.10640 -25.99125 -24.61924 -23.24651 -22.75959 -21.67415 -20.23198 -19.23740 -19.18777 -18.38035 -17.66584 -17.46060 -17.32213 -16.81675 -16.47437 -15.87201 -15.66043 -15.27733 -14.98274 -14.75344 -14.51908 -14.39113 -14.26703 -14.08312 -13.75477 -13.70934 -12.87794 -12.82435 -12.71750 -12.51922 -12.45755 -12.16561 -12.07802 -11.93141 -11.74094 -11.72320 -11.59160 -11.26321 -11.07680 -10.70523 -10.23216 -9.95378 -8.56474 -6.23249 1.12397 1.17055 1.31007 1.44382 1.60370 2.05615 2.14907 2.54548 2.86304 2.92474 3.51589 3.61138 3.68886 3.80489 3.91527 4.03229 4.18065 4.21101 4.32744 4.39795 4.42670 4.51710 4.54279 4.67707 4.72470 4.82767 4.92067 5.08113 5.11288 5.18089 5.22062 5.34212 5.44037 5.52041 5.63260 5.98121 6.32171 6.40132 6.82966 7.01495 7.14932 7.69484 8.61343 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019997 B = 0.005901 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.894287 B = 4743.868641 C = 5343.133541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C 0.096 3.904 4 H 0.084 0.916 5 C -0.127 4.127 6 C -0.104 4.104 7 H 0.119 0.881 8 C 0.474 3.526 9 O -0.601 6.601 10 N -0.460 5.460 11 C -0.333 4.333 12 H 0.034 0.966 13 C 0.009 3.991 14 N -0.907 5.907 15 Si 0.934 3.066 16 H -0.224 1.224 17 H -0.280 1.280 18 H -0.244 1.244 19 C 0.083 3.917 20 C 0.467 3.533 21 O -0.530 6.530 22 O -0.504 6.504 23 C -0.142 4.142 24 C 0.072 3.928 25 O -0.390 6.390 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.282 0.718 34 H 0.109 0.891 35 H 0.159 0.841 36 H 0.426 0.574 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.607 1.418 -4.095 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C 0.038 3.962 4 H 0.102 0.898 5 C -0.166 4.166 6 C -0.125 4.125 7 H 0.137 0.863 8 C 0.265 3.735 9 O -0.484 6.484 10 N -0.181 5.181 11 C -0.461 4.461 12 H 0.052 0.948 13 C -0.194 4.194 14 N -0.544 5.544 15 Si 0.755 3.245 16 H -0.149 1.149 17 H -0.206 1.206 18 H -0.167 1.167 19 C -0.041 4.041 20 C 0.308 3.692 21 O -0.419 6.419 22 O -0.317 6.317 23 C -0.180 4.180 24 C -0.004 4.004 25 O -0.309 6.309 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.176 0.824 36 H 0.288 0.712 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.128 0.872 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.032 0.599 -3.822 21.385 hybrid contribution 1.429 0.631 0.296 1.590 sum -19.603 1.230 -3.526 19.955 Atomic orbital electron populations 1.21670 0.93973 1.02115 1.02259 1.21576 0.97565 0.93452 1.02924 1.22271 0.91168 0.95283 0.87467 0.89796 1.22055 0.97233 0.94171 1.03108 1.21474 0.89979 1.00074 1.00943 0.86284 1.21288 0.90821 0.81681 0.79701 1.90528 1.70802 1.35868 1.51225 1.43412 1.05114 1.11668 1.57938 1.18501 0.80545 1.41515 1.05548 0.94834 1.26280 0.96088 0.94490 1.02506 1.69893 1.13961 1.36082 1.34470 0.86078 0.79675 0.81188 0.77558 1.14859 1.20611 1.16688 1.21895 1.01286 0.86763 0.94202 1.24144 0.73639 0.82037 0.89430 1.90738 1.47027 1.77816 1.26287 1.84479 1.69485 1.29981 1.47767 1.22167 0.99113 1.01067 0.95648 1.22642 0.90493 0.83130 1.04179 1.87899 1.78049 1.25380 1.39613 0.92913 0.91766 0.91892 0.89349 0.92481 0.90249 0.93004 0.90804 0.87377 0.82395 0.71250 0.93776 0.90872 0.87197 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.81 71.98 0.71 -1.56 16 2 C -0.12 -2.31 5.64 30.59 0.17 -2.14 16 3 C 0.10 2.16 2.64 30.62 0.08 2.24 16 4 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 5 C -0.13 -3.85 4.30 30.68 0.13 -3.72 16 6 C -0.10 -3.40 1.97 -11.42 -0.02 -3.42 16 7 H 0.12 2.94 5.95 -2.39 -0.01 2.92 16 8 C 0.47 22.43 6.74 87.66 0.59 23.02 16 9 O -0.60 -34.64 15.95 -3.05 -0.05 -34.68 16 10 N -0.46 -22.29 1.68 -639.62 -1.07 -23.37 16 11 C -0.33 -19.98 9.20 84.04 0.77 -19.20 16 12 H 0.03 2.43 7.96 -2.91 -0.02 2.40 16 13 C 0.01 0.49 5.32 84.93 0.45 0.95 16 14 N -0.91 -54.28 13.96 21.66 0.30 -53.98 16 15 Si 0.93 38.69 25.24 68.60 1.73 40.42 16 16 H -0.22 -7.67 6.50 99.48 0.65 -7.02 16 17 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 18 H -0.24 -9.49 7.11 99.48 0.71 -8.78 16 19 C 0.08 3.00 4.82 85.63 0.41 3.41 16 20 C 0.47 16.32 7.01 71.23 0.50 16.82 16 21 O -0.53 -23.47 15.88 21.97 0.35 -23.12 16 22 O -0.50 -11.94 13.42 -51.46 -0.69 -12.63 16 23 C -0.14 -4.36 5.40 30.68 0.17 -4.20 16 24 C 0.07 1.58 6.84 72.01 0.49 2.07 16 25 O -0.39 -9.74 9.94 -148.98 -1.48 -11.22 16 26 H 0.05 0.94 7.82 -2.39 -0.02 0.92 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.05 1.90 7.77 -2.39 -0.02 1.88 16 33 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.11 3.95 3.08 -2.39 -0.01 3.94 16 35 H 0.16 3.98 5.72 -2.39 -0.01 3.96 16 36 H 0.43 6.27 9.10 -74.06 -0.67 5.60 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 2.31 5.17 -2.38 -0.01 2.30 16 39 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -83.29 320.65 3.88 -79.41 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.33 Total: 24.90 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 4.46 Total: 14.27 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -0.77 Total: -77.35 kcal Atomic # 8 Polarization: -79.79 SS G_CDS: -1.87 Total: -81.66 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 1.73 Total: 40.42 kcal Total: -83.29 3.88 -79.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609947771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.054 kcal (2) G-P(sol) polarization free energy of solvation -83.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds