Wall clock time and date at job start Tue Mar 31 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46860 * 2 1 4 4 H 1.09002 * 109.48363 * 55.02640 * 3 2 1 5 5 C 1.53108 * 109.49582 * 174.96278 * 3 2 1 6 6 C 1.53177 * 109.16011 * 177.50906 * 5 3 2 7 7 H 1.08994 * 109.54114 * 63.06291 * 6 5 3 8 8 C 1.50701 * 109.54193 * 183.24214 * 6 5 3 9 9 O 1.21291 * 119.99786 * 32.67174 * 8 6 5 10 10 N 1.34778 * 119.99817 * 212.67334 * 8 6 5 11 11 C 1.37095 * 119.99740 * 2.85500 * 10 8 6 12 12 H 1.07995 * 120.00268 * 340.92184 * 11 10 8 13 13 C 1.38958 * 119.99540 * 160.92773 * 11 10 8 14 14 N 1.31410 * 119.99844 * 337.81425 * 13 11 10 15 15 Si 1.86802 * 119.99889 * 157.82260 * 13 11 10 16 16 H 1.48502 * 109.47241 * 59.99504 * 15 13 11 17 17 H 1.48500 * 109.46983 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46752 * 299.99454 * 15 13 11 19 19 C 1.46499 * 119.99703 * 182.85320 * 10 8 6 20 20 C 1.50699 * 109.47147 * 271.41046 * 19 10 8 21 21 O 1.20826 * 120.00124 * 0.02562 * 20 19 10 22 22 O 1.34229 * 120.00138 * 180.02562 * 20 19 10 23 23 C 1.53180 * 109.10609 * 303.15195 * 6 5 3 24 24 C 1.53089 * 109.16311 * 56.94047 * 23 6 5 25 25 O 1.42900 * 109.48225 * 294.99845 * 3 2 1 26 26 H 1.08996 * 109.47390 * 60.00053 * 1 2 3 27 27 H 1.08999 * 109.46630 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47587 * 299.99718 * 1 2 3 29 29 H 1.09001 * 109.47587 * 240.00282 * 2 1 3 30 30 H 1.08996 * 109.47390 * 119.99947 * 2 1 3 31 31 H 1.09003 * 109.45109 * 57.64710 * 5 3 2 32 32 H 1.09003 * 109.59599 * 297.46164 * 5 3 2 33 33 H 0.97005 * 119.99475 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.46522 * 151.41202 * 19 10 8 35 35 H 1.08995 * 109.47390 * 31.41243 * 19 10 8 36 36 H 0.96700 * 117.00131 * 180.02562 * 22 20 19 37 37 H 1.09002 * 109.51947 * 176.84335 * 23 6 5 38 38 H 1.08993 * 109.52212 * 297.03172 * 23 6 5 39 39 H 1.08994 * 109.48579 * 62.37017 * 24 23 6 40 40 H 1.08996 * 109.47895 * 182.40495 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6057 1.9816 0.8420 5 6 3.5657 1.4451 0.1267 6 6 4.0730 2.8891 0.0633 7 1 3.6807 3.4508 0.9109 8 6 5.5794 2.8965 0.1073 9 8 6.2051 1.9859 -0.3930 10 7 6.2311 3.9150 0.7025 11 6 5.5236 4.9144 1.3191 12 1 4.4817 5.0660 1.0786 13 6 6.1471 5.7324 2.2534 14 7 7.2311 5.3180 2.8700 15 14 5.4444 7.4211 2.6331 16 1 4.0599 7.2763 3.1502 17 1 6.2874 8.0893 3.6569 18 1 5.4271 8.2398 1.3943 19 6 7.6955 3.9541 0.6907 20 6 8.2277 3.2070 1.8864 21 8 7.4622 2.6941 2.6680 22 8 9.5520 3.1114 2.0831 23 6 3.5952 3.5315 -1.2426 24 6 2.0683 3.4485 -1.3142 25 8 1.6620 2.0816 -1.2210 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.9989 0.8705 -0.6920 32 1 3.8543 0.9990 1.0785 33 1 7.6661 5.8889 3.5226 34 1 8.0316 4.9903 0.7305 35 1 8.0641 3.4875 -0.2228 36 1 9.8457 2.6220 2.8637 37 1 3.9049 4.5762 -1.2692 38 1 4.0290 3.0003 -2.0898 39 1 1.6344 4.0138 -0.4895 40 1 1.7256 3.8658 -2.2610 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609947772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:18 Heat of formation + Delta-G solvation = -177.878198 kcal Electronic energy + Delta-G solvation = -24097.503955 eV Core-core repulsion = 20491.260133 eV Total energy + Delta-G solvation = -3606.243822 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.80258 -38.92381 -37.79866 -35.18249 -34.43461 -33.83745 -33.05838 -31.62006 -29.54673 -28.11867 -25.53083 -24.59041 -23.35024 -21.72191 -20.80945 -19.91358 -19.07424 -17.00764 -16.85307 -16.30344 -16.17290 -15.50183 -15.46044 -14.52550 -14.44037 -14.33403 -14.22000 -13.81664 -13.53412 -13.46078 -12.99629 -12.64486 -12.41348 -11.78645 -11.72937 -11.57976 -11.48868 -11.44015 -11.03922 -11.01536 -10.90102 -10.73657 -10.56918 -10.39523 -10.15857 -10.12940 -9.87340 -9.53024 -9.32014 -9.06659 -8.44823 -7.97645 -6.55090 -4.05006 3.04357 3.14350 3.15708 3.59258 3.76455 3.98011 4.03129 4.28525 4.60279 4.88498 5.08124 5.15780 5.28993 5.30892 5.41279 5.45879 5.59210 5.70592 5.77393 5.91212 5.95687 6.02216 6.14143 6.17700 6.23424 6.28091 6.35969 6.39827 6.45642 6.53214 6.62354 6.68856 6.83352 7.30139 7.51329 7.54112 7.70749 8.17968 8.93647 9.26588 9.34883 9.73773 10.52120 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.005834 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.376907 B = 4798.044140 C = 5689.832281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.092 3.908 4 H 0.056 0.944 5 C -0.129 4.129 6 C -0.092 4.092 7 H 0.094 0.906 8 C 0.478 3.522 9 O -0.601 6.601 10 N -0.429 5.429 11 C -0.340 4.340 12 H 0.104 0.896 13 C 0.039 3.961 14 N -0.862 5.862 15 Si 0.924 3.076 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.159 3.841 20 C 0.499 3.501 21 O -0.502 6.502 22 O -0.540 6.540 23 C -0.141 4.141 24 C 0.066 3.934 25 O -0.382 6.382 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.272 0.728 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.389 0.611 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.484 -1.746 -4.009 7.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.034 3.966 4 H 0.074 0.926 5 C -0.167 4.167 6 C -0.113 4.113 7 H 0.113 0.887 8 C 0.268 3.732 9 O -0.487 6.487 10 N -0.147 5.147 11 C -0.467 4.467 12 H 0.122 0.878 13 C -0.167 4.167 14 N -0.500 5.500 15 Si 0.750 3.250 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.197 1.197 19 C 0.033 3.967 20 C 0.339 3.661 21 O -0.387 6.387 22 O -0.351 6.351 23 C -0.179 4.179 24 C -0.011 4.011 25 O -0.301 6.301 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.245 0.755 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.490 -2.116 -4.360 8.100 hybrid contribution 0.240 0.903 1.396 1.680 sum -6.250 -1.213 -2.964 7.023 Atomic orbital electron populations 1.21713 0.95602 1.01093 1.02107 1.21531 0.96212 0.94796 1.02756 1.22152 0.94011 0.93569 0.86838 0.92622 1.22034 0.94602 0.96589 1.03491 1.21072 0.93949 0.97048 0.99276 0.88749 1.20101 0.89344 0.81387 0.82404 1.90526 1.69014 1.36494 1.52623 1.43408 1.03040 1.20667 1.47621 1.19542 0.96995 1.08287 1.21834 0.87831 1.25246 0.96850 1.00188 0.94411 1.69772 1.20960 1.35601 1.23642 0.86038 0.78954 0.81741 0.78228 1.19779 1.20906 1.19684 1.20298 0.82757 1.00905 0.92750 1.23487 0.78660 0.76533 0.87442 1.90543 1.57902 1.45137 1.45099 1.84510 1.27985 1.72849 1.49720 1.22070 0.96102 1.02019 0.97690 1.22533 0.93979 0.82979 1.01595 1.87848 1.78569 1.24818 1.38879 0.92060 0.93112 0.93061 0.91162 0.90709 0.90339 0.91100 0.91684 0.87184 0.89876 0.75478 0.90235 0.91019 0.93255 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.81 37.16 0.36 -1.28 16 2 C -0.12 -1.48 5.64 -26.73 -0.15 -1.63 16 3 C 0.09 1.39 2.64 -26.67 -0.07 1.32 16 4 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.13 -2.34 4.40 -26.58 -0.12 -2.46 16 6 C -0.09 -1.82 1.91 -91.59 -0.17 -1.99 16 7 H 0.09 1.91 6.22 -51.93 -0.32 1.58 16 8 C 0.48 11.48 6.65 -10.98 -0.07 11.41 16 9 O -0.60 -15.80 15.80 5.55 0.09 -15.71 16 10 N -0.43 -10.58 2.11 -116.10 -0.25 -10.83 16 11 C -0.34 -8.28 8.88 -14.93 -0.13 -8.41 16 12 H 0.10 2.35 6.19 -52.49 -0.33 2.03 16 13 C 0.04 0.94 4.85 -17.47 -0.08 0.86 16 14 N -0.86 -22.18 8.74 55.50 0.48 -21.70 16 15 Si 0.92 18.84 29.61 -169.99 -5.03 13.81 16 16 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 19 C 0.16 3.77 5.21 -5.19 -0.03 3.75 16 20 C 0.50 12.24 6.27 36.01 0.23 12.47 16 21 O -0.50 -14.05 16.30 -18.75 -0.31 -14.36 16 22 O -0.54 -10.97 13.42 -39.26 -0.53 -11.49 16 23 C -0.14 -2.35 5.41 -26.59 -0.14 -2.49 16 24 C 0.07 0.93 6.84 37.20 0.25 1.19 16 25 O -0.38 -5.91 9.94 -35.23 -0.35 -6.26 16 26 H 0.06 0.71 7.82 -51.93 -0.41 0.31 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.52 7.75 -51.93 -0.40 1.12 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.11 2.56 6.89 -51.93 -0.36 2.20 16 35 H 0.08 1.86 7.51 -51.93 -0.39 1.47 16 36 H 0.39 6.23 9.10 45.56 0.41 6.64 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -31.43 326.95 -6.24 -37.67 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.15 Total: 11.24 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -0.13 Total: 12.71 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.24 Total: -32.53 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -1.10 Total: -47.83 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.43 -6.24 -37.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609947772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.205 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds