Wall clock time and date at job start Tue Mar 31 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46860 * 2 1 4 4 H 1.09002 * 109.48363 * 55.02640 * 3 2 1 5 5 C 1.53108 * 109.49582 * 174.96278 * 3 2 1 6 6 C 1.53177 * 109.16011 * 177.50906 * 5 3 2 7 7 H 1.08994 * 109.54114 * 63.06291 * 6 5 3 8 8 C 1.50701 * 109.54193 * 183.24214 * 6 5 3 9 9 O 1.21291 * 119.99786 * 32.67174 * 8 6 5 10 10 N 1.34778 * 119.99817 * 212.67334 * 8 6 5 11 11 C 1.37095 * 119.99740 * 2.85500 * 10 8 6 12 12 H 1.07995 * 120.00268 * 340.92184 * 11 10 8 13 13 C 1.38958 * 119.99540 * 160.92773 * 11 10 8 14 14 N 1.31410 * 119.99844 * 337.81425 * 13 11 10 15 15 Si 1.86802 * 119.99889 * 157.82260 * 13 11 10 16 16 H 1.48502 * 109.47241 * 59.99504 * 15 13 11 17 17 H 1.48500 * 109.46983 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46752 * 299.99454 * 15 13 11 19 19 C 1.46499 * 119.99703 * 182.85320 * 10 8 6 20 20 C 1.50699 * 109.47147 * 271.41046 * 19 10 8 21 21 O 1.20826 * 120.00124 * 0.02562 * 20 19 10 22 22 O 1.34229 * 120.00138 * 180.02562 * 20 19 10 23 23 C 1.53180 * 109.10609 * 303.15195 * 6 5 3 24 24 C 1.53089 * 109.16311 * 56.94047 * 23 6 5 25 25 O 1.42900 * 109.48225 * 294.99845 * 3 2 1 26 26 H 1.08996 * 109.47390 * 60.00053 * 1 2 3 27 27 H 1.08999 * 109.46630 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47587 * 299.99718 * 1 2 3 29 29 H 1.09001 * 109.47587 * 240.00282 * 2 1 3 30 30 H 1.08996 * 109.47390 * 119.99947 * 2 1 3 31 31 H 1.09003 * 109.45109 * 57.64710 * 5 3 2 32 32 H 1.09003 * 109.59599 * 297.46164 * 5 3 2 33 33 H 0.97005 * 119.99475 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.46522 * 151.41202 * 19 10 8 35 35 H 1.08995 * 109.47390 * 31.41243 * 19 10 8 36 36 H 0.96700 * 117.00131 * 180.02562 * 22 20 19 37 37 H 1.09002 * 109.51947 * 176.84335 * 23 6 5 38 38 H 1.08993 * 109.52212 * 297.03172 * 23 6 5 39 39 H 1.08994 * 109.48579 * 62.37017 * 24 23 6 40 40 H 1.08996 * 109.47895 * 182.40495 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6057 1.9816 0.8420 5 6 3.5657 1.4451 0.1267 6 6 4.0730 2.8891 0.0633 7 1 3.6807 3.4508 0.9109 8 6 5.5794 2.8965 0.1073 9 8 6.2051 1.9859 -0.3930 10 7 6.2311 3.9150 0.7025 11 6 5.5236 4.9144 1.3191 12 1 4.4817 5.0660 1.0786 13 6 6.1471 5.7324 2.2534 14 7 7.2311 5.3180 2.8700 15 14 5.4444 7.4211 2.6331 16 1 4.0599 7.2763 3.1502 17 1 6.2874 8.0893 3.6569 18 1 5.4271 8.2398 1.3943 19 6 7.6955 3.9541 0.6907 20 6 8.2277 3.2070 1.8864 21 8 7.4622 2.6941 2.6680 22 8 9.5520 3.1114 2.0831 23 6 3.5952 3.5315 -1.2426 24 6 2.0683 3.4485 -1.3142 25 8 1.6620 2.0816 -1.2210 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.9989 0.8705 -0.6920 32 1 3.8543 0.9990 1.0785 33 1 7.6661 5.8889 3.5226 34 1 8.0316 4.9903 0.7305 35 1 8.0641 3.4875 -0.2228 36 1 9.8457 2.6220 2.8637 37 1 3.9049 4.5762 -1.2692 38 1 4.0290 3.0003 -2.0898 39 1 1.6344 4.0138 -0.4895 40 1 1.7256 3.8658 -2.2610 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609947772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:17 Heat of formation + Delta-G solvation = -198.333542 kcal Electronic energy + Delta-G solvation = -24098.390965 eV Core-core repulsion = 20491.260133 eV Total energy + Delta-G solvation = -3607.130833 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.47683 -40.59459 -39.46826 -37.03722 -36.35851 -34.93806 -34.52779 -33.51036 -30.71725 -29.94890 -27.14062 -26.20941 -24.61299 -23.20601 -22.22254 -21.43919 -20.84873 -18.85795 -18.61752 -18.11473 -17.42984 -17.30745 -16.83009 -16.27363 -16.17765 -16.09922 -15.57161 -15.34059 -14.95249 -14.54391 -14.33227 -14.28591 -13.88417 -13.57435 -13.46073 -13.23003 -12.83342 -12.67930 -12.66510 -12.48925 -12.23905 -12.13209 -12.03688 -11.96846 -11.73582 -11.51276 -11.49960 -11.21224 -10.97511 -10.70606 -10.16740 -9.88915 -8.40341 -5.96577 1.41353 1.49569 1.58822 1.78073 1.85888 2.26695 2.52603 2.82477 2.90604 3.13019 3.77195 3.89206 3.90167 4.02712 4.20465 4.25637 4.34989 4.44148 4.51166 4.55290 4.59960 4.67377 4.79912 4.83334 4.86956 4.90825 4.97116 5.12851 5.14546 5.17609 5.23702 5.37070 5.44958 5.49215 5.69078 5.96461 6.29695 6.32982 7.05591 7.40947 7.48943 7.86412 8.66739 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.005834 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.376907 B = 4798.044140 C = 5689.832281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.098 3.902 4 H 0.065 0.935 5 C -0.124 4.124 6 C -0.089 4.089 7 H 0.090 0.910 8 C 0.464 3.536 9 O -0.634 6.634 10 N -0.438 5.438 11 C -0.355 4.355 12 H 0.118 0.882 13 C -0.004 4.004 14 N -0.891 5.891 15 Si 0.995 3.005 16 H -0.267 1.267 17 H -0.289 1.289 18 H -0.259 1.259 19 C 0.154 3.846 20 C 0.502 3.498 21 O -0.544 6.544 22 O -0.526 6.526 23 C -0.134 4.134 24 C 0.068 3.932 25 O -0.387 6.387 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.271 0.729 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.410 0.590 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 -0.672 -4.217 9.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C 0.040 3.960 4 H 0.083 0.917 5 C -0.162 4.162 6 C -0.110 4.110 7 H 0.108 0.892 8 C 0.255 3.745 9 O -0.522 6.522 10 N -0.156 5.156 11 C -0.482 4.482 12 H 0.135 0.865 13 C -0.206 4.206 14 N -0.529 5.529 15 Si 0.818 3.182 16 H -0.192 1.192 17 H -0.215 1.215 18 H -0.184 1.184 19 C 0.028 3.972 20 C 0.344 3.656 21 O -0.432 6.432 22 O -0.339 6.339 23 C -0.172 4.172 24 C -0.009 4.009 25 O -0.306 6.306 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.269 0.731 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.220 -1.040 -4.578 9.466 hybrid contribution 0.923 0.525 1.480 1.822 sum -7.297 -0.515 -3.098 7.944 Atomic orbital electron populations 1.21667 0.93868 1.02244 1.02155 1.21561 0.97669 0.93207 1.02886 1.22153 0.91428 0.95209 0.87198 0.91747 1.21999 0.97150 0.95218 1.01866 1.21101 0.90890 0.98278 1.00780 0.89156 1.20921 0.91206 0.80704 0.81691 1.90487 1.70131 1.37583 1.53975 1.43663 1.03422 1.21020 1.47481 1.19965 0.97812 1.08298 1.22094 0.86481 1.26159 0.97155 1.03316 0.93987 1.69875 1.22315 1.36556 1.24188 0.84963 0.78111 0.77022 0.78111 1.19158 1.21512 1.18382 1.20385 0.82976 1.00976 0.92888 1.23589 0.79375 0.75604 0.87027 1.90518 1.59168 1.46986 1.46530 1.84440 1.25777 1.72770 1.50871 1.22051 0.98245 1.01629 0.95270 1.22677 0.91685 0.82682 1.03806 1.87859 1.78252 1.25558 1.38946 0.92517 0.91480 0.92444 0.91642 0.90092 0.92182 0.92621 0.91927 0.86986 0.89227 0.73061 0.89786 0.92249 0.91851 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.81 71.98 0.71 -2.12 16 2 C -0.12 -2.81 5.64 30.59 0.17 -2.64 16 3 C 0.10 2.83 2.64 30.63 0.08 2.91 16 4 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 5 C -0.12 -4.54 4.40 30.69 0.13 -4.41 16 6 C -0.09 -3.53 1.91 -11.42 -0.02 -3.55 16 7 H 0.09 3.61 6.22 -2.39 -0.01 3.60 16 8 C 0.46 22.72 6.65 87.66 0.58 23.30 16 9 O -0.63 -34.35 15.80 -3.06 -0.05 -34.40 16 10 N -0.44 -21.88 2.11 -639.61 -1.35 -23.23 16 11 C -0.36 -17.21 8.88 84.04 0.75 -16.47 16 12 H 0.12 5.20 6.19 -2.91 -0.02 5.18 16 13 C 0.00 -0.18 4.85 84.93 0.41 0.23 16 14 N -0.89 -45.89 8.74 21.67 0.19 -45.71 16 15 Si 0.99 37.73 29.61 68.60 2.03 39.76 16 16 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 17 H -0.29 -11.16 7.11 99.48 0.71 -10.46 16 18 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 19 C 0.15 7.41 5.21 85.63 0.45 7.85 16 20 C 0.50 24.94 6.27 71.24 0.45 25.39 16 21 O -0.54 -31.03 16.30 21.96 0.36 -30.67 16 22 O -0.53 -21.18 13.42 -51.41 -0.69 -21.87 16 23 C -0.13 -4.33 5.41 30.68 0.17 -4.16 16 24 C 0.07 1.74 6.84 72.01 0.49 2.24 16 25 O -0.39 -11.17 9.94 -148.98 -1.48 -12.65 16 26 H 0.06 1.18 7.82 -2.39 -0.02 1.16 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 2.39 7.75 -2.39 -0.02 2.38 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.27 13.41 8.31 -92.70 -0.77 12.64 16 34 H 0.11 5.27 6.89 -2.39 -0.02 5.26 16 35 H 0.09 4.11 7.51 -2.39 -0.02 4.09 16 36 H 0.41 12.79 9.10 -74.06 -0.67 12.12 16 37 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -67.66 326.95 3.75 -63.91 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: 0.38 Total: 36.28 kcal Atomic # 6 Polarization: 24.21 SS G_CDS: 4.36 Total: 28.57 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -1.16 Total: -68.94 kcal Atomic # 8 Polarization: -97.72 SS G_CDS: -1.86 Total: -99.59 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -67.66 3.75 -63.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609947772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.419 kcal (2) G-P(sol) polarization free energy of solvation -67.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds