Wall clock time and date at job start Tue Mar 31 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47454 * 2 1 4 4 H 1.08993 * 109.49139 * 305.03380 * 3 2 1 5 5 C 1.53087 * 109.48012 * 184.99712 * 3 2 1 6 6 C 1.53183 * 109.16114 * 182.41127 * 5 3 2 7 7 H 1.09000 * 109.53959 * 176.93762 * 6 5 3 8 8 C 1.50693 * 109.54444 * 297.11654 * 6 5 3 9 9 O 1.21293 * 119.99985 * 54.57112 * 8 6 5 10 10 N 1.34779 * 119.99955 * 234.57185 * 8 6 5 11 11 C 1.37102 * 120.00168 * 184.96442 * 10 8 6 12 12 H 1.07993 * 119.99919 * 132.14369 * 11 10 8 13 13 C 1.38950 * 119.99892 * 312.14941 * 11 10 8 14 14 N 1.31414 * 120.00156 * 167.82763 * 13 11 10 15 15 Si 1.86800 * 120.00026 * 347.54934 * 13 11 10 16 16 H 1.48496 * 109.47225 * 93.07208 * 15 13 11 17 17 H 1.48496 * 109.47009 * 213.07487 * 15 13 11 18 18 H 1.48505 * 109.47249 * 333.07033 * 15 13 11 19 19 C 1.46506 * 120.00136 * 4.96360 * 10 8 6 20 20 C 1.50693 * 109.46776 * 275.64967 * 19 10 8 21 21 O 1.20823 * 120.00468 * 354.44173 * 20 19 10 22 22 O 1.34237 * 119.99554 * 174.44640 * 20 19 10 23 23 C 1.53177 * 109.03668 * 56.98629 * 6 5 3 24 24 C 1.53093 * 109.16028 * 303.01724 * 23 6 5 25 25 O 1.42906 * 109.41704 * 57.61197 * 24 23 6 26 26 H 1.09000 * 109.47206 * 299.99955 * 1 2 3 27 27 H 1.09009 * 109.46850 * 59.99596 * 1 2 3 28 28 H 1.09001 * 109.47475 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46733 * 240.00143 * 2 1 3 30 30 H 1.09001 * 109.46993 * 120.01020 * 2 1 3 31 31 H 1.08994 * 109.52480 * 62.51050 * 5 3 2 32 32 H 1.09001 * 109.57589 * 302.34894 * 5 3 2 33 33 H 0.96994 * 119.99907 * 179.72401 * 14 13 11 34 34 H 1.09000 * 109.46848 * 35.64688 * 19 10 8 35 35 H 1.08995 * 109.47205 * 155.64422 * 19 10 8 36 36 H 0.96698 * 116.99836 * 179.97438 * 22 20 19 37 37 H 1.08999 * 109.52619 * 62.91932 * 23 6 5 38 38 H 1.08997 * 109.52435 * 183.11699 * 23 6 5 39 39 H 1.09000 * 109.48152 * 297.62706 * 24 23 6 40 40 H 1.09003 * 109.48364 * 177.59251 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6052 1.9819 -0.8413 5 6 3.5658 1.4444 -0.1257 6 6 4.0734 2.8884 -0.0644 7 1 5.1629 2.8935 -0.0987 8 6 3.5285 3.6645 -1.2354 9 8 2.3327 3.6999 -1.4359 10 7 4.3697 4.3194 -2.0600 11 6 3.8700 5.1080 -3.0641 12 1 4.2544 6.1068 -3.2082 13 6 2.8689 4.6220 -3.8961 14 7 2.2236 5.4414 -4.6956 15 14 2.4455 2.8027 -3.8839 16 1 1.3356 2.5591 -2.9280 17 1 2.0273 2.3827 -5.2455 18 1 3.6372 2.0199 -3.4687 19 6 5.8182 4.1886 -1.8835 20 6 6.2874 5.1685 -0.8392 21 8 5.5131 5.9689 -0.3706 22 8 7.5656 5.1520 -0.4297 23 6 3.5971 3.5304 1.2422 24 6 2.0701 3.4478 1.3152 25 8 1.6633 2.0810 1.2217 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 3.8534 0.9974 -1.0772 32 1 4.0004 0.8704 0.6927 33 1 1.5275 5.1015 -5.2793 34 1 6.0549 3.1742 -1.5624 35 1 6.3197 4.3968 -2.8286 36 1 7.8199 5.7999 0.2417 37 1 4.0314 2.9987 2.0889 38 1 3.9070 4.5750 1.2690 39 1 1.6357 4.0135 0.4910 40 1 1.7283 3.8648 2.2625 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609947778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:20 Heat of formation + Delta-G solvation = -161.125797 kcal Electronic energy + Delta-G solvation = -25022.235388 eV Core-core repulsion = 21416.718005 eV Total energy + Delta-G solvation = -3605.517384 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.53390 -39.58762 -37.82135 -35.82792 -34.60562 -33.74190 -33.32824 -31.99012 -29.53848 -28.12078 -26.13383 -24.14784 -23.30920 -21.97874 -21.11429 -20.59976 -18.89312 -17.79816 -17.46142 -16.38100 -16.08421 -15.85500 -15.62222 -15.41432 -14.94254 -14.44541 -14.10569 -13.90672 -13.46660 -13.11120 -12.99424 -12.90149 -12.42885 -12.36705 -12.09256 -11.95364 -11.60721 -11.54260 -11.36568 -11.14758 -11.13157 -10.85300 -10.58559 -10.48374 -10.26262 -10.12965 -10.01015 -9.86861 -9.15539 -8.70065 -8.14245 -7.79764 -6.23608 -4.13426 2.56634 3.02879 3.32586 3.34921 3.57628 3.81288 4.18000 4.26148 4.46054 4.91063 4.99500 5.06026 5.12513 5.26269 5.38998 5.43813 5.48802 5.56706 5.67755 5.72789 5.74788 5.80742 5.92046 5.95678 6.06671 6.11387 6.15956 6.22084 6.26125 6.39438 6.47734 6.54311 6.70839 6.75104 7.72600 7.73989 7.85021 8.23454 8.61908 8.74878 9.30060 9.59566 10.80817 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.009290 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.473779 B = 3013.110113 C = 4283.350092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.071 3.929 4 H 0.099 0.901 5 C -0.135 4.135 6 C -0.114 4.114 7 H 0.078 0.922 8 C 0.470 3.530 9 O -0.523 6.523 10 N -0.451 5.451 11 C -0.348 4.348 12 H 0.093 0.907 13 C 0.089 3.911 14 N -0.869 5.869 15 Si 0.920 3.080 16 H -0.251 1.251 17 H -0.311 1.311 18 H -0.283 1.283 19 C 0.112 3.888 20 C 0.450 3.550 21 O -0.493 6.493 22 O -0.526 6.526 23 C -0.134 4.134 24 C 0.055 3.945 25 O -0.381 6.381 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.273 0.727 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.401 0.599 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.742 -8.406 9.426 14.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.014 3.986 4 H 0.117 0.883 5 C -0.173 4.173 6 C -0.136 4.136 7 H 0.096 0.904 8 C 0.261 3.739 9 O -0.405 6.405 10 N -0.173 5.173 11 C -0.474 4.474 12 H 0.111 0.889 13 C -0.120 4.120 14 N -0.504 5.504 15 Si 0.751 3.249 16 H -0.177 1.177 17 H -0.241 1.241 18 H -0.209 1.209 19 C -0.014 4.014 20 C 0.290 3.710 21 O -0.378 6.378 22 O -0.338 6.338 23 C -0.172 4.172 24 C -0.022 4.022 25 O -0.300 6.300 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.142 0.858 36 H 0.259 0.741 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.544 -8.470 9.142 13.640 hybrid contribution 0.476 -0.048 0.204 0.520 sum 6.020 -8.519 9.345 14.005 Atomic orbital electron populations 1.21692 0.95460 1.00784 1.02563 1.21533 0.96732 0.95154 1.01782 1.22545 0.92898 0.93657 0.89521 0.88303 1.22080 0.97914 0.94938 1.02340 1.21418 1.00642 0.95976 0.95547 0.90411 1.20403 0.87394 0.83248 0.82876 1.90426 1.14978 1.63100 1.71979 1.43359 1.01183 1.44270 1.28473 1.18822 1.22842 0.97154 1.08550 0.88901 1.25380 0.94275 0.99321 0.93004 1.69693 1.21458 1.35704 1.23502 0.86234 0.80048 0.83356 0.75226 1.17686 1.24131 1.20899 1.21191 0.86576 0.96274 0.97380 1.24763 0.79159 0.84791 0.82329 1.90736 1.55119 1.37589 1.54338 1.84567 1.30945 1.60066 1.58227 1.21962 0.98206 1.01597 0.95409 1.22674 0.93183 0.83760 1.02561 1.87757 1.78959 1.24796 1.38513 0.91995 0.92766 0.93290 0.91258 0.91788 0.91251 0.90945 0.91671 0.88206 0.85756 0.74071 0.91233 0.90454 0.90204 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.81 37.16 0.36 -1.75 16 2 C -0.11 -1.70 5.64 -26.73 -0.15 -1.85 16 3 C 0.07 1.28 2.36 -26.69 -0.06 1.22 16 4 H 0.10 2.17 4.83 -51.93 -0.25 1.92 16 5 C -0.13 -2.22 4.91 -26.59 -0.13 -2.35 16 6 C -0.11 -2.03 2.61 -91.59 -0.24 -2.26 16 7 H 0.08 1.20 5.26 -51.93 -0.27 0.93 16 8 C 0.47 10.62 4.62 -10.99 -0.05 10.57 16 9 O -0.52 -13.45 7.06 5.55 0.04 -13.42 16 10 N -0.45 -10.39 1.63 -116.10 -0.19 -10.58 16 11 C -0.35 -9.61 9.65 -14.93 -0.14 -9.75 16 12 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 13 C 0.09 2.55 5.03 -17.47 -0.09 2.47 16 14 N -0.87 -26.17 13.96 55.50 0.77 -25.40 16 15 Si 0.92 23.44 24.53 -169.99 -4.17 19.27 16 16 H -0.25 -6.59 5.64 56.52 0.32 -6.27 16 17 H -0.31 -7.91 7.11 56.52 0.40 -7.51 16 18 H -0.28 -6.74 7.10 56.52 0.40 -6.34 16 19 C 0.11 1.95 5.59 -5.19 -0.03 1.92 16 20 C 0.45 7.51 7.76 36.00 0.28 7.79 16 21 O -0.49 -10.18 17.00 -18.75 -0.32 -10.50 16 22 O -0.53 -6.44 13.42 -39.28 -0.53 -6.97 16 23 C -0.13 -2.24 5.63 -26.59 -0.15 -2.39 16 24 C 0.05 0.98 6.55 37.21 0.24 1.23 16 25 O -0.38 -6.96 9.94 -35.23 -0.35 -7.31 16 26 H 0.06 0.91 7.82 -51.93 -0.41 0.50 16 27 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 34 H 0.10 1.41 6.44 -51.93 -0.33 1.07 16 35 H 0.12 1.98 7.99 -51.93 -0.42 1.57 16 36 H 0.40 3.24 9.10 45.56 0.41 3.65 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.37 8.00 -51.93 -0.42 0.96 16 39 H 0.08 1.71 5.89 -51.93 -0.31 1.40 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 314.40 15.07 4.74 4.74 Total: -1.00 -34.25 314.40 -5.17 -39.42 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.01 Total: 5.90 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.16 Total: 4.85 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.59 Total: -35.98 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -1.16 Total: -38.20 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.17 Total: 19.27 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.25 -5.17 -39.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609947778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.705 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds