Wall clock time and date at job start Tue Mar 31 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47454 * 2 1 4 4 H 1.08993 * 109.49139 * 305.03380 * 3 2 1 5 5 C 1.53087 * 109.48012 * 184.99712 * 3 2 1 6 6 C 1.53183 * 109.16114 * 182.41127 * 5 3 2 7 7 H 1.09000 * 109.53959 * 176.93762 * 6 5 3 8 8 C 1.50693 * 109.54444 * 297.11654 * 6 5 3 9 9 O 1.21293 * 119.99985 * 54.57112 * 8 6 5 10 10 N 1.34779 * 119.99955 * 234.57185 * 8 6 5 11 11 C 1.37102 * 120.00168 * 184.96442 * 10 8 6 12 12 H 1.07993 * 119.99919 * 132.14369 * 11 10 8 13 13 C 1.38950 * 119.99892 * 312.14941 * 11 10 8 14 14 N 1.31414 * 120.00156 * 167.82763 * 13 11 10 15 15 Si 1.86800 * 120.00026 * 347.54934 * 13 11 10 16 16 H 1.48496 * 109.47225 * 93.07208 * 15 13 11 17 17 H 1.48496 * 109.47009 * 213.07487 * 15 13 11 18 18 H 1.48505 * 109.47249 * 333.07033 * 15 13 11 19 19 C 1.46506 * 120.00136 * 4.96360 * 10 8 6 20 20 C 1.50693 * 109.46776 * 275.64967 * 19 10 8 21 21 O 1.20823 * 120.00468 * 354.44173 * 20 19 10 22 22 O 1.34237 * 119.99554 * 174.44640 * 20 19 10 23 23 C 1.53177 * 109.03668 * 56.98629 * 6 5 3 24 24 C 1.53093 * 109.16028 * 303.01724 * 23 6 5 25 25 O 1.42906 * 109.41704 * 57.61197 * 24 23 6 26 26 H 1.09000 * 109.47206 * 299.99955 * 1 2 3 27 27 H 1.09009 * 109.46850 * 59.99596 * 1 2 3 28 28 H 1.09001 * 109.47475 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46733 * 240.00143 * 2 1 3 30 30 H 1.09001 * 109.46993 * 120.01020 * 2 1 3 31 31 H 1.08994 * 109.52480 * 62.51050 * 5 3 2 32 32 H 1.09001 * 109.57589 * 302.34894 * 5 3 2 33 33 H 0.96994 * 119.99907 * 179.72401 * 14 13 11 34 34 H 1.09000 * 109.46848 * 35.64688 * 19 10 8 35 35 H 1.08995 * 109.47205 * 155.64422 * 19 10 8 36 36 H 0.96698 * 116.99836 * 179.97438 * 22 20 19 37 37 H 1.08999 * 109.52619 * 62.91932 * 23 6 5 38 38 H 1.08997 * 109.52435 * 183.11699 * 23 6 5 39 39 H 1.09000 * 109.48152 * 297.62706 * 24 23 6 40 40 H 1.09003 * 109.48364 * 177.59251 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6052 1.9819 -0.8413 5 6 3.5658 1.4444 -0.1257 6 6 4.0734 2.8884 -0.0644 7 1 5.1629 2.8935 -0.0987 8 6 3.5285 3.6645 -1.2354 9 8 2.3327 3.6999 -1.4359 10 7 4.3697 4.3194 -2.0600 11 6 3.8700 5.1080 -3.0641 12 1 4.2544 6.1068 -3.2082 13 6 2.8689 4.6220 -3.8961 14 7 2.2236 5.4414 -4.6956 15 14 2.4455 2.8027 -3.8839 16 1 1.3356 2.5591 -2.9280 17 1 2.0273 2.3827 -5.2455 18 1 3.6372 2.0199 -3.4687 19 6 5.8182 4.1886 -1.8835 20 6 6.2874 5.1685 -0.8392 21 8 5.5131 5.9689 -0.3706 22 8 7.5656 5.1520 -0.4297 23 6 3.5971 3.5304 1.2422 24 6 2.0701 3.4478 1.3152 25 8 1.6633 2.0810 1.2217 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 3.8534 0.9974 -1.0772 32 1 4.0004 0.8704 0.6927 33 1 1.5275 5.1015 -5.2793 34 1 6.0549 3.1742 -1.5624 35 1 6.3197 4.3968 -2.8286 36 1 7.8199 5.7999 0.2417 37 1 4.0314 2.9987 2.0889 38 1 3.9070 4.5750 1.2690 39 1 1.6357 4.0135 0.4910 40 1 1.7283 3.8648 2.2625 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609947778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:20 Heat of formation + Delta-G solvation = -186.706669 kcal Electronic energy + Delta-G solvation = -25023.344658 eV Core-core repulsion = 21416.718005 eV Total energy + Delta-G solvation = -3606.626653 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.05833 -40.92546 -39.36064 -37.10900 -36.33550 -35.05515 -34.79395 -33.95882 -30.79611 -29.70791 -27.74857 -25.78711 -24.64314 -23.42039 -22.46735 -21.97640 -20.65763 -19.14808 -19.06474 -17.83091 -17.52516 -17.30042 -17.27697 -16.80294 -16.54604 -15.99767 -15.58753 -15.51297 -14.93500 -14.67205 -14.49686 -14.19121 -14.05461 -13.82686 -13.57649 -13.30488 -13.13046 -13.04176 -12.77854 -12.62752 -12.43013 -12.32879 -12.13095 -11.96335 -11.82970 -11.66020 -11.58701 -11.34368 -10.83084 -10.57007 -9.83680 -9.66260 -8.41495 -6.31261 1.21728 1.26554 1.31523 1.51483 1.71244 2.21385 2.42117 2.63056 2.90578 2.99700 3.60041 3.66153 3.73573 3.98551 4.03297 4.17264 4.28156 4.32049 4.41384 4.49765 4.51251 4.56178 4.62090 4.69036 4.80741 4.89490 4.93120 5.00490 5.05093 5.08632 5.16444 5.31692 5.43106 5.64370 5.67746 5.81690 6.34478 6.64281 6.81383 7.07158 7.23279 7.73440 8.66250 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.009290 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.473779 B = 3013.110113 C = 4283.350092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C 0.063 3.937 4 H 0.053 0.947 5 C -0.132 4.132 6 C -0.109 4.109 7 H 0.110 0.890 8 C 0.463 3.537 9 O -0.560 6.560 10 N -0.469 5.469 11 C -0.339 4.339 12 H 0.054 0.946 13 C 0.038 3.962 14 N -0.919 5.919 15 Si 0.975 3.025 16 H -0.272 1.272 17 H -0.315 1.315 18 H -0.251 1.251 19 C 0.103 3.897 20 C 0.464 3.536 21 O -0.541 6.541 22 O -0.504 6.504 23 C -0.127 4.127 24 C 0.053 3.947 25 O -0.382 6.382 26 H 0.052 0.948 27 H 0.030 0.970 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.273 0.727 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.425 0.575 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.034 0.966 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.405 -11.476 11.723 18.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C 0.005 3.995 4 H 0.071 0.929 5 C -0.170 4.170 6 C -0.131 4.131 7 H 0.128 0.872 8 C 0.255 3.745 9 O -0.443 6.443 10 N -0.192 5.192 11 C -0.466 4.466 12 H 0.072 0.928 13 C -0.165 4.165 14 N -0.557 5.557 15 Si 0.805 3.195 16 H -0.199 1.199 17 H -0.245 1.245 18 H -0.175 1.175 19 C -0.022 4.022 20 C 0.306 3.694 21 O -0.431 6.431 22 O -0.317 6.317 23 C -0.165 4.165 24 C -0.024 4.024 25 O -0.301 6.301 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.286 0.714 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.292 -11.550 11.464 18.264 hybrid contribution -0.292 1.021 -0.388 1.131 sum 8.000 -10.529 11.075 17.249 Atomic orbital electron populations 1.21689 0.95702 1.02080 1.00990 1.21571 0.96602 0.93233 1.03497 1.22577 0.94331 0.94780 0.87801 0.92938 1.22135 0.96470 0.94144 1.04206 1.21502 1.02328 0.96086 0.93155 0.87192 1.21411 0.86979 0.82530 0.83543 1.90432 1.16956 1.64179 1.72749 1.43484 1.03920 1.43922 1.27832 1.18588 1.22525 0.96465 1.09041 0.92776 1.26113 0.94482 1.02842 0.93078 1.69806 1.22997 1.37407 1.25494 0.85327 0.80223 0.79716 0.74249 1.19894 1.24521 1.17468 1.21465 0.82978 0.98972 0.98781 1.24418 0.79892 0.83619 0.81511 1.90747 1.56768 1.39416 1.56122 1.84486 1.28029 1.60520 1.58641 1.21943 0.96963 1.01311 0.96235 1.22643 0.94376 0.83455 1.01877 1.87756 1.79399 1.24508 1.38467 0.92915 0.95043 0.90515 0.89993 0.89398 0.90760 0.87020 0.91813 0.83706 0.84502 0.71379 0.87356 0.91863 0.94818 0.87664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.81 71.98 0.71 -3.29 16 2 C -0.11 -2.98 5.64 30.59 0.17 -2.81 16 3 C 0.06 2.13 2.36 30.62 0.07 2.20 16 4 H 0.05 2.33 4.83 -2.39 -0.01 2.32 16 5 C -0.13 -3.76 4.91 30.68 0.15 -3.61 16 6 C -0.11 -3.50 2.61 -11.42 -0.03 -3.53 16 7 H 0.11 2.78 5.26 -2.39 -0.01 2.77 16 8 C 0.46 20.52 4.62 87.65 0.41 20.92 16 9 O -0.56 -29.46 7.06 -3.07 -0.02 -29.48 16 10 N -0.47 -21.30 1.63 -639.61 -1.04 -22.34 16 11 C -0.34 -19.32 9.65 84.04 0.81 -18.50 16 12 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 13 C 0.04 2.26 5.03 84.93 0.43 2.69 16 14 N -0.92 -58.26 13.96 21.66 0.30 -57.96 16 15 Si 0.97 49.61 24.53 68.60 1.68 51.30 16 16 H -0.27 -14.69 5.64 99.48 0.56 -14.13 16 17 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 18 H -0.25 -11.18 7.10 99.48 0.71 -10.47 16 19 C 0.10 3.27 5.59 85.63 0.48 3.75 16 20 C 0.46 14.23 7.76 71.23 0.55 14.78 16 21 O -0.54 -21.90 17.00 21.97 0.37 -21.52 16 22 O -0.50 -10.18 13.42 -51.49 -0.69 -10.87 16 23 C -0.13 -3.86 5.63 30.68 0.17 -3.69 16 24 C 0.05 1.86 6.55 72.01 0.47 2.33 16 25 O -0.38 -13.27 9.94 -148.98 -1.48 -14.75 16 26 H 0.05 1.49 7.82 -2.39 -0.02 1.48 16 27 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.11 2.38 8.14 -2.39 -0.02 2.37 16 33 H 0.27 16.33 8.31 -92.71 -0.77 15.56 16 34 H 0.15 3.30 6.44 -2.39 -0.02 3.28 16 35 H 0.14 4.01 7.99 -2.39 -0.02 3.99 16 36 H 0.42 5.06 9.10 -74.06 -0.67 4.39 16 37 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.06 2.13 8.00 -2.39 -0.02 2.11 16 39 H 0.03 1.50 5.89 -2.39 -0.01 1.48 16 40 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -80.69 314.40 3.76 -76.94 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.24 Total: 17.43 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 4.39 Total: 11.26 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -0.74 Total: -80.30 kcal Atomic # 8 Polarization: -74.80 SS G_CDS: -1.82 Total: -76.62 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 1.68 Total: 51.30 kcal Total: -80.69 3.76 -76.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609947778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.771 kcal (2) G-P(sol) polarization free energy of solvation -80.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds