Wall clock time and date at job start Tue Mar 31 2020 05:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47369 * 2 1 4 4 H 1.09004 * 109.47392 * 55.02295 * 3 2 1 5 5 C 1.53089 * 109.48247 * 175.05882 * 3 2 1 6 6 C 1.53181 * 109.16223 * 177.59719 * 5 3 2 7 7 H 1.09004 * 109.54299 * 183.15188 * 6 5 3 8 8 C 1.50697 * 109.54352 * 62.97450 * 6 5 3 9 9 O 1.21289 * 120.00422 * 340.81356 * 8 6 5 10 10 N 1.34779 * 119.99910 * 160.81631 * 8 6 5 11 11 C 1.37097 * 120.00222 * 185.36576 * 10 8 6 12 12 H 1.08000 * 119.99806 * 320.46617 * 11 10 8 13 13 C 1.38943 * 120.00368 * 140.46749 * 11 10 8 14 14 N 1.31420 * 120.00156 * 160.30838 * 13 11 10 15 15 Si 1.86804 * 120.00121 * 340.30928 * 13 11 10 16 16 H 1.48492 * 109.47344 * 92.82812 * 15 13 11 17 17 H 1.48498 * 109.47025 * 212.83249 * 15 13 11 18 18 H 1.48496 * 109.46727 * 332.82828 * 15 13 11 19 19 C 1.46502 * 120.00148 * 5.35831 * 10 8 6 20 20 C 1.50701 * 109.46660 * 93.70844 * 19 10 8 21 21 O 1.20822 * 120.00258 * 0.02562 * 20 19 10 22 22 O 1.34238 * 119.99775 * 180.02562 * 20 19 10 23 23 C 1.53174 * 109.04439 * 303.02410 * 6 5 3 24 24 C 1.53094 * 109.16260 * 56.96728 * 23 6 5 25 25 O 1.42904 * 109.48102 * 295.00656 * 3 2 1 26 26 H 1.09004 * 109.47553 * 59.99512 * 1 2 3 27 27 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47225 * 299.99767 * 1 2 3 29 29 H 1.09007 * 109.46929 * 240.00487 * 2 1 3 30 30 H 1.08995 * 109.47546 * 120.00766 * 2 1 3 31 31 H 1.09006 * 109.51939 * 297.49694 * 5 3 2 32 32 H 1.08994 * 109.52344 * 57.62409 * 5 3 2 33 33 H 0.96994 * 119.99754 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.47356 * 213.71216 * 19 10 8 35 35 H 1.08996 * 109.46743 * 333.71394 * 19 10 8 36 36 H 0.96696 * 116.99898 * 179.97438 * 22 20 19 37 37 H 1.09001 * 109.51730 * 297.06507 * 23 6 5 38 38 H 1.08998 * 109.53377 * 176.87311 * 23 6 5 39 39 H 1.09005 * 109.47938 * 182.42400 * 24 23 6 40 40 H 1.09002 * 109.48547 * 62.39381 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9815 0.8421 5 6 3.5659 1.4445 0.1243 6 6 4.0734 2.8885 0.0632 7 1 5.1630 2.8937 0.0949 8 6 3.5313 3.6635 1.2364 9 8 2.5613 3.2534 1.8381 10 7 4.1243 4.8124 1.6170 11 6 3.7010 5.4601 2.7488 12 1 2.6472 5.5115 2.9794 13 6 4.6278 6.0503 3.5993 14 7 4.2442 6.9787 4.4466 15 14 6.4192 5.5243 3.5381 16 1 7.1647 6.4129 2.6111 17 1 7.0097 5.6196 4.8973 18 1 6.5071 4.1220 3.0575 19 6 5.2212 5.3692 0.8215 20 6 4.6706 6.3678 -0.1638 21 8 3.4838 6.5917 -0.1976 22 8 5.4988 7.0084 -1.0039 23 6 3.5957 3.5313 -1.2425 24 6 2.0687 3.4485 -1.3141 25 8 1.6620 2.0817 -1.2209 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8544 0.9970 1.0755 32 1 3.9988 0.8702 -0.6947 33 1 4.8912 7.3909 5.0400 34 1 5.9336 5.8645 1.4812 35 1 5.7232 4.5657 0.2824 36 1 5.0992 7.6394 -1.6180 37 1 4.0294 3.0003 -2.0899 38 1 3.9054 4.5761 -1.2690 39 1 1.7260 3.8659 -2.2610 40 1 1.6348 4.0139 -0.4894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609947779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:24 Heat of formation + Delta-G solvation = -159.335727 kcal Electronic energy + Delta-G solvation = -24773.854260 eV Core-core repulsion = 21168.414500 eV Total energy + Delta-G solvation = -3605.439760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54527 -39.48397 -37.77922 -35.78325 -34.88681 -33.80787 -33.26253 -32.06533 -29.53364 -28.14174 -26.27771 -24.46769 -23.33422 -21.83130 -21.43524 -20.69911 -18.33079 -17.80834 -17.41238 -16.67134 -16.19391 -16.01892 -15.64284 -15.46838 -15.04950 -14.46541 -14.06081 -13.85994 -13.47621 -13.24533 -13.02722 -12.87142 -12.78254 -12.41069 -12.25056 -12.05263 -11.64264 -11.52432 -11.38688 -11.10339 -11.03377 -10.85329 -10.67106 -10.61442 -10.33936 -10.15925 -10.07211 -9.90833 -9.28905 -9.03759 -8.34031 -7.96357 -6.48519 -4.11184 2.62530 2.87605 3.04577 3.10391 3.15718 3.70452 3.99078 4.13804 4.22123 4.79794 4.89497 5.00894 5.09953 5.20165 5.25125 5.37034 5.44861 5.50075 5.56395 5.69613 5.71196 5.80778 5.86298 5.93148 6.01630 6.08992 6.16427 6.19896 6.22719 6.29659 6.37332 6.51784 6.71849 6.83464 7.38199 7.66968 8.16113 8.27638 8.36876 8.81854 9.15833 9.54652 10.63315 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019246 B = 0.006760 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.477655 B = 4140.801213 C = 4834.700629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C 0.068 3.932 4 H 0.108 0.892 5 C -0.122 4.122 6 C -0.119 4.119 7 H 0.087 0.913 8 C 0.488 3.512 9 O -0.539 6.539 10 N -0.451 5.451 11 C -0.313 4.313 12 H 0.109 0.891 13 C 0.059 3.941 14 N -0.858 5.858 15 Si 0.862 3.138 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.259 1.259 19 C 0.093 3.907 20 C 0.456 3.544 21 O -0.485 6.485 22 O -0.527 6.527 23 C -0.144 4.144 24 C 0.066 3.934 25 O -0.384 6.384 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.275 0.725 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.401 0.599 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.616 -7.203 -11.513 14.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C 0.011 3.989 4 H 0.125 0.875 5 C -0.160 4.160 6 C -0.141 4.141 7 H 0.105 0.895 8 C 0.277 3.723 9 O -0.419 6.419 10 N -0.173 5.173 11 C -0.440 4.440 12 H 0.126 0.874 13 C -0.147 4.147 14 N -0.493 5.493 15 Si 0.688 3.312 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.183 1.183 19 C -0.033 4.033 20 C 0.296 3.704 21 O -0.370 6.370 22 O -0.339 6.339 23 C -0.182 4.182 24 C -0.011 4.011 25 O -0.303 6.303 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.259 0.741 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.866 -7.591 -10.877 13.570 hybrid contribution 1.210 0.741 -0.166 1.429 sum 4.076 -6.849 -11.043 13.619 Atomic orbital electron populations 1.21693 0.95615 1.00736 1.02437 1.21509 0.96519 0.95170 1.01755 1.22726 0.93340 0.93885 0.88926 0.87477 1.21932 0.97455 0.94302 1.02335 1.21482 1.01076 0.96625 0.94874 0.89524 1.20186 0.85620 0.80874 0.85616 1.90440 1.26367 1.68437 1.56679 1.43388 1.32279 1.19402 1.22200 1.19033 0.95597 1.32273 0.97081 0.87378 1.25386 0.98519 0.95118 0.95671 1.69733 1.35940 1.21355 1.22284 0.87195 0.85327 0.80388 0.78243 1.19744 1.20580 1.18301 1.21641 0.93070 0.95608 0.92983 1.24461 0.85524 0.80771 0.79677 1.90729 1.17306 1.61915 1.67032 1.84577 1.45239 1.55522 1.48580 1.22176 0.98383 1.01159 0.96512 1.22417 0.92981 0.83601 1.02095 1.87784 1.78835 1.24347 1.39377 0.92215 0.93395 0.92667 0.92098 0.91014 0.90697 0.91438 0.91402 0.87507 0.87472 0.74061 0.90682 0.91272 0.89522 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.81 37.16 0.36 -1.58 16 2 C -0.11 -1.55 5.64 -26.73 -0.15 -1.70 16 3 C 0.07 1.15 2.35 -26.68 -0.06 1.09 16 4 H 0.11 2.19 5.24 -51.93 -0.27 1.92 16 5 C -0.12 -1.92 4.70 -26.59 -0.12 -2.04 16 6 C -0.12 -2.03 2.19 -91.59 -0.20 -2.23 16 7 H 0.09 1.28 6.54 -51.93 -0.34 0.94 16 8 C 0.49 10.86 5.74 -10.99 -0.06 10.79 16 9 O -0.54 -13.60 13.09 5.55 0.07 -13.53 16 10 N -0.45 -10.57 1.66 -116.10 -0.19 -10.76 16 11 C -0.31 -8.69 9.29 -14.94 -0.14 -8.83 16 12 H 0.11 3.44 7.91 -52.49 -0.41 3.03 16 13 C 0.06 1.60 5.35 -17.47 -0.09 1.50 16 14 N -0.86 -24.42 13.96 55.50 0.77 -23.65 16 15 Si 0.86 19.13 25.05 -169.99 -4.26 14.88 16 16 H -0.27 -5.52 6.60 56.52 0.37 -5.15 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 19 C 0.09 1.81 4.49 -5.19 -0.02 1.78 16 20 C 0.46 8.50 6.31 36.01 0.23 8.73 16 21 O -0.48 -10.63 16.49 -18.75 -0.31 -10.94 16 22 O -0.53 -7.45 13.42 -39.28 -0.53 -7.98 16 23 C -0.14 -2.26 5.50 -26.59 -0.15 -2.40 16 24 C 0.07 1.13 6.62 37.21 0.25 1.37 16 25 O -0.38 -6.63 9.94 -35.23 -0.35 -6.98 16 26 H 0.06 0.82 7.82 -51.93 -0.41 0.41 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.11 2.16 3.09 -51.93 -0.16 2.00 16 35 H 0.11 1.66 5.77 -51.93 -0.30 1.36 16 36 H 0.40 3.83 9.10 45.56 0.41 4.24 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.11 4.45 -51.93 -0.23 0.88 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.22 7.23 -51.93 -0.38 0.85 16 LS Contribution 313.01 15.07 4.72 4.72 Total: -1.00 -32.53 313.01 -4.87 -37.40 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -4.63 Total: 10.35 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.17 Total: 6.49 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.58 Total: -34.41 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -1.11 Total: -39.42 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.26 Total: 14.88 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.53 -4.87 -37.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609947779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.931 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds