Wall clock time and date at job start Tue Mar 31 2020 05:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47369 * 2 1 4 4 H 1.09004 * 109.47392 * 55.02295 * 3 2 1 5 5 C 1.53089 * 109.48247 * 175.05882 * 3 2 1 6 6 C 1.53181 * 109.16223 * 177.59719 * 5 3 2 7 7 H 1.09004 * 109.54299 * 183.15188 * 6 5 3 8 8 C 1.50697 * 109.54352 * 62.97450 * 6 5 3 9 9 O 1.21289 * 120.00422 * 340.81356 * 8 6 5 10 10 N 1.34779 * 119.99910 * 160.81631 * 8 6 5 11 11 C 1.37097 * 120.00222 * 185.36576 * 10 8 6 12 12 H 1.08000 * 119.99806 * 320.46617 * 11 10 8 13 13 C 1.38943 * 120.00368 * 140.46749 * 11 10 8 14 14 N 1.31420 * 120.00156 * 160.30838 * 13 11 10 15 15 Si 1.86804 * 120.00121 * 340.30928 * 13 11 10 16 16 H 1.48492 * 109.47344 * 92.82812 * 15 13 11 17 17 H 1.48498 * 109.47025 * 212.83249 * 15 13 11 18 18 H 1.48496 * 109.46727 * 332.82828 * 15 13 11 19 19 C 1.46502 * 120.00148 * 5.35831 * 10 8 6 20 20 C 1.50701 * 109.46660 * 93.70844 * 19 10 8 21 21 O 1.20822 * 120.00258 * 0.02562 * 20 19 10 22 22 O 1.34238 * 119.99775 * 180.02562 * 20 19 10 23 23 C 1.53174 * 109.04439 * 303.02410 * 6 5 3 24 24 C 1.53094 * 109.16260 * 56.96728 * 23 6 5 25 25 O 1.42904 * 109.48102 * 295.00656 * 3 2 1 26 26 H 1.09004 * 109.47553 * 59.99512 * 1 2 3 27 27 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47225 * 299.99767 * 1 2 3 29 29 H 1.09007 * 109.46929 * 240.00487 * 2 1 3 30 30 H 1.08995 * 109.47546 * 120.00766 * 2 1 3 31 31 H 1.09006 * 109.51939 * 297.49694 * 5 3 2 32 32 H 1.08994 * 109.52344 * 57.62409 * 5 3 2 33 33 H 0.96994 * 119.99754 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.47356 * 213.71216 * 19 10 8 35 35 H 1.08996 * 109.46743 * 333.71394 * 19 10 8 36 36 H 0.96696 * 116.99898 * 179.97438 * 22 20 19 37 37 H 1.09001 * 109.51730 * 297.06507 * 23 6 5 38 38 H 1.08998 * 109.53377 * 176.87311 * 23 6 5 39 39 H 1.09005 * 109.47938 * 182.42400 * 24 23 6 40 40 H 1.09002 * 109.48547 * 62.39381 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9815 0.8421 5 6 3.5659 1.4445 0.1243 6 6 4.0734 2.8885 0.0632 7 1 5.1630 2.8937 0.0949 8 6 3.5313 3.6635 1.2364 9 8 2.5613 3.2534 1.8381 10 7 4.1243 4.8124 1.6170 11 6 3.7010 5.4601 2.7488 12 1 2.6472 5.5115 2.9794 13 6 4.6278 6.0503 3.5993 14 7 4.2442 6.9787 4.4466 15 14 6.4192 5.5243 3.5381 16 1 7.1647 6.4129 2.6111 17 1 7.0097 5.6196 4.8973 18 1 6.5071 4.1220 3.0575 19 6 5.2212 5.3692 0.8215 20 6 4.6706 6.3678 -0.1638 21 8 3.4838 6.5917 -0.1976 22 8 5.4988 7.0084 -1.0039 23 6 3.5957 3.5313 -1.2425 24 6 2.0687 3.4485 -1.3141 25 8 1.6620 2.0817 -1.2209 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8544 0.9970 1.0755 32 1 3.9988 0.8702 -0.6947 33 1 4.8912 7.3909 5.0400 34 1 5.9336 5.8645 1.4812 35 1 5.7232 4.5657 0.2824 36 1 5.0992 7.6394 -1.6180 37 1 4.0294 3.0003 -2.0899 38 1 3.9054 4.5761 -1.2690 39 1 1.7260 3.8659 -2.2610 40 1 1.6348 4.0139 -0.4894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609947779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:22 Heat of formation + Delta-G solvation = -184.196493 kcal Electronic energy + Delta-G solvation = -24774.932304 eV Core-core repulsion = 21168.414500 eV Total energy + Delta-G solvation = -3606.517804 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.05949 -40.90004 -39.30888 -37.22872 -36.60835 -35.09313 -34.64162 -33.97900 -30.74268 -29.76523 -27.94969 -26.01544 -24.62599 -23.29695 -22.86278 -21.99788 -19.97196 -19.24210 -19.19013 -18.26961 -17.66036 -17.35972 -17.12162 -16.94440 -16.62329 -15.91070 -15.66504 -15.30479 -14.84957 -14.62197 -14.55532 -14.36125 -14.21791 -13.93106 -13.71897 -13.50259 -13.02640 -12.87093 -12.77747 -12.57202 -12.44016 -12.31599 -12.04987 -11.93182 -11.80334 -11.71361 -11.61938 -11.32741 -11.01197 -10.54386 -9.99220 -9.81736 -8.53233 -6.23108 1.14224 1.16488 1.31399 1.44430 1.61004 2.09436 2.16413 2.58267 2.88023 2.93516 3.53693 3.69677 3.72289 3.83600 3.97713 4.02971 4.10752 4.29631 4.33081 4.44698 4.47837 4.56081 4.60874 4.69864 4.81177 4.91614 4.93083 5.02191 5.06118 5.10979 5.20158 5.35960 5.45516 5.47519 5.62205 6.02673 6.33684 6.42529 6.86730 7.01219 7.17646 7.73441 8.64383 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019246 B = 0.006760 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.477655 B = 4140.801213 C = 4834.700629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C 0.062 3.938 4 H 0.059 0.941 5 C -0.120 4.120 6 C -0.115 4.115 7 H 0.126 0.874 8 C 0.479 3.521 9 O -0.585 6.585 10 N -0.464 5.464 11 C -0.329 4.329 12 H 0.034 0.966 13 C 0.005 3.995 14 N -0.913 5.913 15 Si 0.937 3.063 16 H -0.230 1.230 17 H -0.283 1.283 18 H -0.237 1.237 19 C 0.085 3.915 20 C 0.466 3.534 21 O -0.531 6.531 22 O -0.505 6.505 23 C -0.137 4.137 24 C 0.064 3.936 25 O -0.385 6.385 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.281 0.719 34 H 0.106 0.894 35 H 0.159 0.841 36 H 0.426 0.574 37 H 0.118 0.882 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.597 -9.111 -14.567 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C 0.005 3.995 4 H 0.077 0.923 5 C -0.158 4.158 6 C -0.136 4.136 7 H 0.144 0.856 8 C 0.270 3.730 9 O -0.467 6.467 10 N -0.186 5.186 11 C -0.457 4.457 12 H 0.052 0.948 13 C -0.197 4.197 14 N -0.550 5.550 15 Si 0.757 3.243 16 H -0.155 1.155 17 H -0.209 1.209 18 H -0.160 1.160 19 C -0.040 4.040 20 C 0.307 3.693 21 O -0.420 6.420 22 O -0.318 6.318 23 C -0.174 4.174 24 C -0.013 4.013 25 O -0.304 6.304 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.176 0.824 36 H 0.287 0.713 37 H 0.137 0.863 38 H 0.084 0.916 39 H 0.127 0.873 40 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 6.868 -9.479 -13.987 18.239 hybrid contribution -0.198 1.404 0.749 1.604 sum 6.670 -8.075 -13.238 16.880 Atomic orbital electron populations 1.21685 0.95715 1.01979 1.01025 1.21522 0.96498 0.93238 1.03242 1.22688 0.94683 0.94949 0.87183 0.92296 1.21974 0.96152 0.93839 1.03786 1.21604 1.03043 0.96377 0.92552 0.85608 1.21332 0.84580 0.80636 0.86491 1.90448 1.28314 1.69481 1.58489 1.43403 1.33458 1.19933 1.21795 1.18492 0.92890 1.33957 1.00375 0.94825 1.26306 1.04651 0.94133 0.94576 1.69884 1.38440 1.22949 1.23755 0.86021 0.77595 0.81569 0.79070 1.15507 1.20908 1.16005 1.21838 0.91481 0.97513 0.93161 1.24178 0.84900 0.80484 0.79768 1.90747 1.19348 1.63342 1.68516 1.84485 1.43763 1.55466 1.48102 1.22183 0.96697 1.01506 0.97051 1.22423 0.94614 0.83153 1.01088 1.87782 1.79331 1.24098 1.39198 0.93110 0.90761 0.94653 0.89864 0.90018 0.90959 0.87459 0.90953 0.87706 0.82403 0.71274 0.86331 0.91591 0.87325 0.97470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.81 71.98 0.71 -3.11 16 2 C -0.11 -2.80 5.64 30.59 0.17 -2.62 16 3 C 0.06 2.07 2.35 30.62 0.07 2.14 16 4 H 0.06 2.58 5.24 -2.38 -0.01 2.56 16 5 C -0.12 -3.40 4.70 30.68 0.14 -3.25 16 6 C -0.11 -3.55 2.19 -11.42 -0.03 -3.58 16 7 H 0.13 2.93 6.54 -2.38 -0.02 2.92 16 8 C 0.48 21.60 5.74 87.66 0.50 22.11 16 9 O -0.59 -31.63 13.09 -3.06 -0.04 -31.67 16 10 N -0.46 -21.98 1.66 -639.62 -1.06 -23.04 16 11 C -0.33 -19.46 9.29 84.04 0.78 -18.68 16 12 H 0.03 2.41 7.91 -2.91 -0.02 2.39 16 13 C 0.01 0.28 5.35 84.92 0.45 0.74 16 14 N -0.91 -54.71 13.96 21.66 0.30 -54.41 16 15 Si 0.94 38.46 25.05 68.60 1.72 40.18 16 16 H -0.23 -8.00 6.60 99.48 0.66 -7.34 16 17 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.24 -8.87 7.11 99.48 0.71 -8.16 16 19 C 0.08 3.04 4.49 85.63 0.38 3.43 16 20 C 0.47 16.35 6.31 71.24 0.45 16.80 16 21 O -0.53 -23.52 16.49 21.98 0.36 -23.16 16 22 O -0.50 -12.18 13.42 -51.50 -0.69 -12.87 16 23 C -0.14 -3.82 5.50 30.68 0.17 -3.65 16 24 C 0.06 2.17 6.62 72.01 0.48 2.64 16 25 O -0.38 -12.93 9.94 -148.98 -1.48 -14.41 16 26 H 0.05 1.39 7.82 -2.38 -0.02 1.37 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 2.09 8.14 -2.38 -0.02 2.08 16 32 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.11 3.83 3.09 -2.39 -0.01 3.82 16 35 H 0.16 3.96 5.77 -2.39 -0.01 3.95 16 36 H 0.43 6.46 9.10 -74.06 -0.67 5.79 16 37 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.07 1.91 4.45 -2.39 -0.01 1.90 16 39 H 0.11 3.10 8.14 -2.38 -0.02 3.08 16 40 H 0.01 0.30 7.23 -2.39 -0.02 0.29 16 Total: -1.00 -81.17 313.01 3.75 -77.42 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.35 Total: 29.00 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 4.29 Total: 12.96 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -0.76 Total: -77.45 kcal Atomic # 8 Polarization: -80.26 SS G_CDS: -1.85 Total: -82.12 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.72 Total: 40.18 kcal Total: -81.17 3.75 -77.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609947779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.778 kcal (2) G-P(sol) polarization free energy of solvation -81.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds