Wall clock time and date at job start Tue Mar 31 2020 06:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47118 * 2 1 4 4 C 1.42903 * 113.99890 * 179.97438 * 3 2 1 5 5 C 1.53788 * 113.68650 * 110.93677 * 4 3 2 6 6 C 1.53786 * 87.07611 * 139.99338 * 5 4 3 7 7 C 1.53001 * 113.60970 * 220.01577 * 6 5 4 8 8 C 1.50702 * 109.47458 * 272.49604 * 7 6 5 9 9 O 1.21293 * 119.99819 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99904 * 180.02562 * 8 7 6 11 11 C 1.37095 * 119.99558 * 180.02562 * 10 8 7 12 12 H 1.08006 * 120.00327 * 16.50555 * 11 10 8 13 13 C 1.38955 * 119.99708 * 196.51095 * 11 10 8 14 14 N 1.31405 * 119.99795 * 21.65141 * 13 11 10 15 15 Si 1.86802 * 119.99845 * 201.65438 * 13 11 10 16 16 H 1.48502 * 109.46985 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47234 * 119.99659 * 15 13 11 18 18 H 1.48505 * 109.46885 * 239.99825 * 15 13 11 19 19 C 1.46496 * 119.99733 * 0.02562 * 10 8 7 20 20 C 1.50702 * 109.47037 * 84.06893 * 19 10 8 21 21 O 1.20826 * 119.99849 * 359.97438 * 20 19 10 22 22 O 1.34229 * 120.00135 * 179.97438 * 20 19 10 23 23 C 1.53779 * 87.08290 * 334.56551 * 6 5 4 24 24 H 1.09002 * 109.46856 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46634 * 299.99670 * 1 2 3 26 26 H 1.09001 * 109.46670 * 60.00124 * 1 2 3 27 27 H 1.09009 * 109.47053 * 240.00278 * 2 1 3 28 28 H 1.09001 * 109.47294 * 120.00303 * 2 1 3 29 29 H 1.08999 * 112.84826 * 339.67242 * 4 3 2 30 30 H 1.08993 * 113.61219 * 254.54234 * 5 4 3 31 31 H 1.09000 * 113.61372 * 25.45028 * 5 4 3 32 32 H 1.09006 * 113.69085 * 89.13037 * 6 5 4 33 33 H 1.08998 * 109.47401 * 32.50517 * 7 6 5 34 34 H 1.09005 * 109.46604 * 152.49972 * 7 6 5 35 35 H 0.97006 * 119.99685 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.46390 * 204.05948 * 19 10 8 37 37 H 1.08991 * 109.47467 * 324.06419 * 19 10 8 38 38 H 0.96695 * 117.00517 * 180.02562 * 22 20 19 39 39 H 1.08993 * 113.61703 * 270.88755 * 23 6 5 40 40 H 1.09010 * 113.61232 * 139.97795 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 6 4.0077 2.0103 -1.3146 6 6 4.9924 2.8184 -0.4530 7 6 5.2365 4.2378 -0.9694 8 6 6.3577 4.2202 -1.9763 9 8 6.9071 3.1750 -2.2539 10 7 6.7498 5.3657 -2.5683 11 6 7.7694 5.3496 -3.4846 12 1 8.0789 4.4164 -3.9318 13 6 8.4048 6.5338 -3.8379 14 7 8.3537 7.5719 -3.0340 15 14 9.3314 6.6498 -5.4558 16 1 9.2392 5.3528 -6.1731 17 1 8.7348 7.7220 -6.2921 18 1 10.7573 6.9665 -5.1878 19 6 6.0866 6.6280 -2.2324 20 6 6.7070 7.2055 -0.9863 21 8 7.6101 6.6221 -0.4351 22 8 6.2562 8.3678 -0.4888 23 6 3.9470 2.7436 0.6723 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.9271 0.5546 0.3499 30 1 4.4885 1.2515 -1.9318 31 1 3.3064 2.6300 -1.8734 32 1 5.9161 2.2854 -0.2271 33 1 4.3292 4.6134 -1.4423 34 1 5.5069 4.8861 -0.1359 35 1 8.7969 8.3987 -3.2809 36 1 6.2053 7.3313 -3.0568 37 1 5.0259 6.4464 -2.0596 38 1 6.6856 8.6986 0.3119 39 1 3.2291 3.5635 0.6566 40 1 4.3789 2.5765 1.6592 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610026064.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:39 Heat of formation + Delta-G solvation = -146.957727 kcal Electronic energy + Delta-G solvation = -23206.252346 eV Core-core repulsion = 19601.349336 eV Total energy + Delta-G solvation = -3604.903010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.75120 -39.15289 -38.00131 -36.33940 -35.18158 -34.44210 -31.83978 -31.21057 -29.27977 -27.61909 -25.48299 -24.87976 -23.05716 -22.42260 -21.09396 -19.42506 -18.76079 -17.17486 -16.87694 -16.73252 -16.18143 -15.70974 -15.61046 -15.25345 -14.74594 -14.44962 -14.24362 -13.98809 -13.71190 -12.97286 -12.76206 -12.59418 -12.24166 -12.18936 -11.94998 -11.76199 -11.63428 -11.55215 -11.20273 -11.10385 -10.96864 -10.55887 -10.46126 -10.43747 -10.33186 -10.20817 -9.99673 -9.63015 -9.32161 -9.03775 -8.45705 -7.89346 -6.43986 -3.87355 3.13330 3.24976 3.32385 3.45218 3.65974 3.71356 4.08913 4.26033 4.66573 4.77268 4.83678 4.95197 4.96738 5.07477 5.12675 5.14737 5.25616 5.39433 5.60692 5.70434 5.75963 5.79360 5.91757 5.94511 5.98490 6.06850 6.11362 6.13506 6.33371 6.45269 6.49237 6.59885 6.74518 7.32941 7.48747 7.55934 8.01483 8.38864 9.02775 9.11392 9.33283 9.87832 10.65209 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023455 B = 0.004013 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.503434 B = 6975.597947 C = 7719.741584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.060 3.940 5 C -0.143 4.143 6 C -0.085 4.085 7 C -0.123 4.123 8 C 0.464 3.536 9 O -0.575 6.575 10 N -0.436 5.436 11 C -0.304 4.304 12 H 0.107 0.893 13 C 0.028 3.972 14 N -0.883 5.883 15 Si 0.927 3.073 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.283 1.283 19 C 0.146 3.854 20 C 0.489 3.511 21 O -0.504 6.504 22 O -0.535 6.535 23 C -0.133 4.133 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.269 0.731 36 H 0.128 0.872 37 H 0.078 0.922 38 H 0.392 0.608 39 H 0.089 0.911 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.724 -5.128 5.709 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.296 6.296 4 C 0.003 3.997 5 C -0.181 4.181 6 C -0.103 4.103 7 C -0.164 4.164 8 C 0.253 3.747 9 O -0.458 6.458 10 N -0.156 5.156 11 C -0.431 4.431 12 H 0.125 0.875 13 C -0.175 4.175 14 N -0.523 5.523 15 Si 0.754 3.246 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.210 1.210 19 C 0.019 3.981 20 C 0.329 3.671 21 O -0.389 6.389 22 O -0.346 6.346 23 C -0.171 4.171 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.095 0.905 38 H 0.248 0.752 39 H 0.107 0.893 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.419 -5.640 5.336 14.646 hybrid contribution 1.168 0.492 -0.101 1.271 sum -11.251 -5.148 5.235 13.435 Atomic orbital electron populations 1.21745 0.94086 1.01961 1.03040 1.22467 0.95347 0.84507 0.99849 1.87941 1.21242 1.25774 1.94692 1.23745 0.80289 0.97887 0.97813 1.23495 0.97849 1.00163 0.96583 1.21993 0.97318 0.95628 0.95393 1.21560 0.98494 0.97492 0.98805 1.20076 0.86672 0.84555 0.83376 1.90506 1.59220 1.30974 1.65062 1.43475 1.31761 1.03549 1.36826 1.19752 1.12070 0.95839 1.15440 0.87486 1.25215 0.97326 0.95782 0.99128 1.69812 1.44153 1.04217 1.34147 0.85851 0.78731 0.78471 0.81578 1.19186 1.20576 1.20950 1.20663 0.93562 0.89303 0.94544 1.23884 0.81077 0.77420 0.84715 1.90614 1.27757 1.61054 1.59486 1.84527 1.63552 1.40643 1.45870 1.23322 0.98032 0.97443 0.98264 0.91400 0.91994 0.91865 0.93474 0.93686 0.89846 0.91124 0.89573 0.88156 0.90261 0.90312 0.92022 0.85475 0.90459 0.75204 0.89257 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.06 0.56 6.50 37.16 0.24 0.80 16 3 O -0.38 -5.00 10.36 -35.23 -0.36 -5.36 16 4 C 0.06 0.79 4.30 -25.92 -0.11 0.68 16 5 C -0.14 -2.17 7.47 -25.91 -0.19 -2.37 16 6 C -0.08 -1.39 3.15 -89.81 -0.28 -1.67 16 7 C -0.12 -2.27 4.15 -27.88 -0.12 -2.39 16 8 C 0.46 11.21 7.41 -10.98 -0.08 11.13 16 9 O -0.57 -15.66 15.40 5.55 0.09 -15.58 16 10 N -0.44 -10.98 2.18 -116.09 -0.25 -11.23 16 11 C -0.30 -8.38 9.34 -14.93 -0.14 -8.52 16 12 H 0.11 3.11 7.37 -52.48 -0.39 2.72 16 13 C 0.03 0.72 4.87 -17.47 -0.09 0.64 16 14 N -0.88 -23.25 9.28 55.50 0.52 -22.74 16 15 Si 0.93 20.57 29.60 -169.99 -5.03 15.54 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C 0.15 3.16 4.97 -5.19 -0.03 3.13 16 20 C 0.49 10.79 5.86 36.01 0.21 11.00 16 21 O -0.50 -13.10 16.79 -18.75 -0.31 -13.42 16 22 O -0.53 -9.54 13.42 -39.26 -0.53 -10.07 16 23 C -0.13 -1.79 7.47 -25.92 -0.19 -1.98 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.99 7.88 -51.93 -0.41 0.58 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.09 1.30 7.90 -51.93 -0.41 0.89 16 32 H 0.10 1.83 7.68 -51.93 -0.40 1.43 16 33 H 0.08 1.28 7.12 -51.93 -0.37 0.91 16 34 H 0.08 1.45 7.52 -51.93 -0.39 1.06 16 35 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.13 2.87 6.37 -51.93 -0.33 2.53 16 37 H 0.08 1.35 6.69 -51.93 -0.35 1.00 16 38 H 0.39 5.35 9.10 45.56 0.41 5.77 16 39 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 40 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -33.53 335.15 -6.38 -39.91 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.14 Total: 8.33 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -0.39 Total: 9.57 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.26 Total: -33.97 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -1.12 Total: -44.43 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.53 -6.38 -39.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610026064.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.049 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds