Wall clock time and date at job start Tue Mar 31 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47118 * 2 1 4 4 C 1.42903 * 113.99890 * 179.97438 * 3 2 1 5 5 C 1.53788 * 113.68650 * 110.93677 * 4 3 2 6 6 C 1.53786 * 87.07611 * 139.99338 * 5 4 3 7 7 C 1.53001 * 113.60970 * 220.01577 * 6 5 4 8 8 C 1.50702 * 109.47458 * 272.49604 * 7 6 5 9 9 O 1.21293 * 119.99819 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99904 * 180.02562 * 8 7 6 11 11 C 1.37095 * 119.99558 * 180.02562 * 10 8 7 12 12 H 1.08006 * 120.00327 * 16.50555 * 11 10 8 13 13 C 1.38955 * 119.99708 * 196.51095 * 11 10 8 14 14 N 1.31405 * 119.99795 * 21.65141 * 13 11 10 15 15 Si 1.86802 * 119.99845 * 201.65438 * 13 11 10 16 16 H 1.48502 * 109.46985 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47234 * 119.99659 * 15 13 11 18 18 H 1.48505 * 109.46885 * 239.99825 * 15 13 11 19 19 C 1.46496 * 119.99733 * 0.02562 * 10 8 7 20 20 C 1.50702 * 109.47037 * 84.06893 * 19 10 8 21 21 O 1.20826 * 119.99849 * 359.97438 * 20 19 10 22 22 O 1.34229 * 120.00135 * 179.97438 * 20 19 10 23 23 C 1.53779 * 87.08290 * 334.56551 * 6 5 4 24 24 H 1.09002 * 109.46856 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46634 * 299.99670 * 1 2 3 26 26 H 1.09001 * 109.46670 * 60.00124 * 1 2 3 27 27 H 1.09009 * 109.47053 * 240.00278 * 2 1 3 28 28 H 1.09001 * 109.47294 * 120.00303 * 2 1 3 29 29 H 1.08999 * 112.84826 * 339.67242 * 4 3 2 30 30 H 1.08993 * 113.61219 * 254.54234 * 5 4 3 31 31 H 1.09000 * 113.61372 * 25.45028 * 5 4 3 32 32 H 1.09006 * 113.69085 * 89.13037 * 6 5 4 33 33 H 1.08998 * 109.47401 * 32.50517 * 7 6 5 34 34 H 1.09005 * 109.46604 * 152.49972 * 7 6 5 35 35 H 0.97006 * 119.99685 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.46390 * 204.05948 * 19 10 8 37 37 H 1.08991 * 109.47467 * 324.06419 * 19 10 8 38 38 H 0.96695 * 117.00517 * 180.02562 * 22 20 19 39 39 H 1.08993 * 113.61703 * 270.88755 * 23 6 5 40 40 H 1.09010 * 113.61232 * 139.97795 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 6 4.0077 2.0103 -1.3146 6 6 4.9924 2.8184 -0.4530 7 6 5.2365 4.2378 -0.9694 8 6 6.3577 4.2202 -1.9763 9 8 6.9071 3.1750 -2.2539 10 7 6.7498 5.3657 -2.5683 11 6 7.7694 5.3496 -3.4846 12 1 8.0789 4.4164 -3.9318 13 6 8.4048 6.5338 -3.8379 14 7 8.3537 7.5719 -3.0340 15 14 9.3314 6.6498 -5.4558 16 1 9.2392 5.3528 -6.1731 17 1 8.7348 7.7220 -6.2921 18 1 10.7573 6.9665 -5.1878 19 6 6.0866 6.6280 -2.2324 20 6 6.7070 7.2055 -0.9863 21 8 7.6101 6.6221 -0.4351 22 8 6.2562 8.3678 -0.4888 23 6 3.9470 2.7436 0.6723 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.9271 0.5546 0.3499 30 1 4.4885 1.2515 -1.9318 31 1 3.3064 2.6300 -1.8734 32 1 5.9161 2.2854 -0.2271 33 1 4.3292 4.6134 -1.4423 34 1 5.5069 4.8861 -0.1359 35 1 8.7969 8.3987 -3.2809 36 1 6.2053 7.3313 -3.0568 37 1 5.0259 6.4464 -2.0596 38 1 6.6856 8.6986 0.3119 39 1 3.2291 3.5635 0.6566 40 1 4.3789 2.5765 1.6592 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610026064.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:38 Heat of formation + Delta-G solvation = -169.636986 kcal Electronic energy + Delta-G solvation = -23207.235792 eV Core-core repulsion = 19601.349336 eV Total energy + Delta-G solvation = -3605.886456 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.34692 -40.54871 -39.63892 -37.47505 -36.88070 -36.29818 -33.79545 -32.11461 -30.69656 -29.39787 -26.75876 -26.59411 -24.09740 -23.50324 -22.77236 -20.85451 -20.26880 -19.00600 -18.66597 -17.96739 -17.76570 -17.38833 -16.63732 -16.49383 -16.25621 -16.21157 -15.90156 -15.59253 -15.10350 -14.31394 -14.06520 -13.72450 -13.64184 -13.44112 -13.37919 -13.31530 -13.11749 -12.98778 -12.69238 -12.40330 -12.20727 -12.12515 -12.10306 -12.08732 -11.70722 -11.55799 -11.47519 -11.20911 -10.95164 -10.38275 -10.30355 -9.84773 -8.43300 -5.94091 1.35123 1.42320 1.56451 1.71521 1.90587 2.26855 2.55536 2.77545 2.98154 3.14006 3.57813 3.67736 3.86376 3.90110 4.13856 4.21495 4.23763 4.25693 4.40572 4.54001 4.61339 4.68453 4.76524 4.80331 4.87396 4.89470 4.92204 4.96410 5.06613 5.12686 5.28432 5.30810 5.46348 5.49061 5.96803 6.03743 6.38888 6.41190 7.12909 7.32671 7.47798 7.96860 8.63777 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.023455 B = 0.004013 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.503434 B = 6975.597947 C = 7719.741584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.391 6.391 4 C 0.071 3.929 5 C -0.146 4.146 6 C -0.094 4.094 7 C -0.110 4.110 8 C 0.450 3.550 9 O -0.619 6.619 10 N -0.449 5.449 11 C -0.342 4.342 12 H 0.077 0.923 13 C -0.001 4.001 14 N -0.893 5.893 15 Si 0.990 3.010 16 H -0.274 1.274 17 H -0.260 1.260 18 H -0.285 1.285 19 C 0.142 3.858 20 C 0.497 3.503 21 O -0.550 6.550 22 O -0.518 6.518 23 C -0.118 4.118 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.274 0.726 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.414 0.586 39 H 0.099 0.901 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.455 -4.339 6.292 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.311 6.311 4 C 0.013 3.987 5 C -0.184 4.184 6 C -0.113 4.113 7 C -0.150 4.150 8 C 0.241 3.759 9 O -0.505 6.505 10 N -0.169 5.169 11 C -0.469 4.469 12 H 0.095 0.905 13 C -0.202 4.202 14 N -0.533 5.533 15 Si 0.814 3.186 16 H -0.198 1.198 17 H -0.184 1.184 18 H -0.211 1.211 19 C 0.016 3.984 20 C 0.340 3.660 21 O -0.439 6.439 22 O -0.330 6.330 23 C -0.156 4.156 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.273 0.727 39 H 0.117 0.883 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.190 -4.796 5.943 16.115 hybrid contribution 1.700 0.286 -0.255 1.743 sum -12.490 -4.510 5.688 14.446 Atomic orbital electron populations 1.21759 0.92737 1.03307 1.02725 1.22721 0.96507 0.83301 1.00577 1.87917 1.20816 1.27680 1.94647 1.23603 0.80721 0.98347 0.95993 1.23508 0.97624 0.99844 0.97400 1.21945 0.97333 0.94350 0.97645 1.21537 0.97145 0.99110 0.97233 1.21101 0.87525 0.83683 0.83564 1.90464 1.60999 1.32494 1.66586 1.43653 1.31428 1.05112 1.36680 1.19644 1.14264 0.95428 1.17590 0.90524 1.25931 0.97660 0.95026 1.01611 1.69887 1.44099 1.04395 1.34885 0.84935 0.77273 0.78509 0.77875 1.19841 1.18438 1.21117 1.20837 0.95599 0.87781 0.94142 1.23841 0.80050 0.77782 0.84368 1.90606 1.29822 1.62551 1.60954 1.84450 1.63047 1.38614 1.46900 1.23234 0.96717 0.97863 0.97763 0.89269 0.91975 0.92480 0.93355 0.92368 0.88583 0.92678 0.89430 0.90682 0.87385 0.89911 0.91622 0.86393 0.86015 0.72697 0.88270 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.05 0.83 6.50 71.98 0.47 1.30 16 3 O -0.39 -9.55 10.36 -148.98 -1.54 -11.09 16 4 C 0.07 1.75 4.30 31.12 0.13 1.89 16 5 C -0.15 -4.37 7.47 31.12 0.23 -4.14 16 6 C -0.09 -3.05 3.15 -10.27 -0.03 -3.09 16 7 C -0.11 -3.99 4.15 29.85 0.12 -3.86 16 8 C 0.45 22.26 7.41 87.66 0.65 22.91 16 9 O -0.62 -35.39 15.40 -3.07 -0.05 -35.44 16 10 N -0.45 -22.98 2.18 -639.60 -1.39 -24.37 16 11 C -0.34 -19.44 9.34 84.04 0.79 -18.66 16 12 H 0.08 4.71 7.37 -2.91 -0.02 4.69 16 13 C 0.00 -0.06 4.87 84.93 0.41 0.36 16 14 N -0.89 -46.68 9.28 21.66 0.20 -46.48 16 15 Si 0.99 42.39 29.60 68.60 2.03 44.42 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 17 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 19 C 0.14 6.01 4.97 85.63 0.43 6.43 16 20 C 0.50 21.34 5.86 71.24 0.42 21.76 16 21 O -0.55 -28.58 16.79 21.96 0.37 -28.21 16 22 O -0.52 -17.16 13.42 -51.41 -0.69 -17.85 16 23 C -0.12 -2.93 7.47 31.12 0.23 -2.69 16 24 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 2.12 7.88 -2.39 -0.02 2.10 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.09 2.57 7.90 -2.39 -0.02 2.55 16 32 H 0.07 2.82 7.68 -2.38 -0.02 2.81 16 33 H 0.11 3.23 7.12 -2.39 -0.02 3.22 16 34 H 0.08 2.93 7.52 -2.38 -0.02 2.92 16 35 H 0.27 13.50 8.31 -92.70 -0.77 12.73 16 36 H 0.12 5.22 6.37 -2.38 -0.02 5.20 16 37 H 0.12 3.95 6.69 -2.39 -0.02 3.93 16 38 H 0.41 10.18 9.10 -74.06 -0.67 9.50 16 39 H 0.10 2.28 8.10 -2.39 -0.02 2.27 16 40 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -74.48 335.15 3.90 -70.59 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.38 Total: 27.66 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 4.59 Total: 20.77 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -1.19 Total: -70.85 kcal Atomic # 8 Polarization: -90.68 SS G_CDS: -1.91 Total: -92.59 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -74.48 3.90 -70.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610026064.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.052 kcal (2) G-P(sol) polarization free energy of solvation -74.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds