Wall clock time and date at job start Tue Mar 31 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00091 * 2 1 4 4 H 1.09003 * 109.47728 * 29.99764 * 3 2 1 5 5 C 1.53000 * 109.46974 * 269.99303 * 3 2 1 6 6 C 1.52990 * 109.47311 * 300.00159 * 5 3 2 7 7 C 1.52996 * 109.47562 * 299.99737 * 6 5 3 8 8 C 1.53000 * 109.47104 * 59.99968 * 7 6 5 9 9 H 1.09006 * 109.46960 * 60.00148 * 8 7 6 10 10 C 1.50697 * 109.47410 * 180.02562 * 8 7 6 11 11 O 1.21292 * 119.99720 * 110.38314 * 10 8 7 12 12 N 1.34772 * 119.99890 * 290.38208 * 10 8 7 13 13 C 1.37092 * 120.00455 * 354.67763 * 12 10 8 14 14 H 1.08004 * 120.00517 * 128.74605 * 13 12 10 15 15 C 1.38953 * 119.99710 * 308.47222 * 13 12 10 16 16 N 1.31409 * 119.99930 * 341.58688 * 15 13 12 17 17 Si 1.86804 * 120.00288 * 161.58597 * 15 13 12 18 18 H 1.48505 * 109.46697 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46997 * 119.99890 * 17 15 13 20 20 H 1.48495 * 109.47113 * 240.00160 * 17 15 13 21 21 C 1.46509 * 119.99787 * 174.66937 * 12 10 8 22 22 C 1.50696 * 109.47080 * 270.00227 * 21 12 10 23 23 O 1.20820 * 120.00286 * 0.02562 * 22 21 12 24 24 O 1.34226 * 119.99654 * 179.97438 * 22 21 12 25 25 C 1.53000 * 109.47004 * 300.00478 * 8 7 6 26 26 H 1.09005 * 109.47047 * 59.99892 * 1 2 3 27 27 H 1.08997 * 109.47909 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47506 * 300.00639 * 1 2 3 29 29 H 1.09006 * 109.47097 * 180.02562 * 5 3 2 30 30 H 1.09004 * 109.46945 * 60.00540 * 5 3 2 31 31 H 1.09008 * 109.47204 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47112 * 60.00195 * 6 5 3 33 33 H 1.08997 * 109.47282 * 300.00355 * 7 6 5 34 34 H 1.09000 * 109.47650 * 180.02562 * 7 6 5 35 35 H 0.97001 * 120.00335 * 2.32935 * 16 15 13 36 36 H 1.08997 * 109.46682 * 30.00745 * 21 12 10 37 37 H 1.08996 * 109.46817 * 150.00407 * 21 12 10 38 38 H 0.96703 * 117.00337 * 180.02562 * 24 22 21 39 39 H 1.09008 * 109.47269 * 179.97438 * 25 8 7 40 40 H 1.08997 * 109.47028 * 299.99395 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2178 1.7712 -1.4425 6 6 3.1515 0.7972 -2.1636 7 6 4.5002 0.7549 -1.4424 8 6 4.2927 0.2891 0.0001 9 1 3.8493 -0.7067 0.0002 10 6 5.6210 0.2481 0.7108 11 8 5.8657 1.0516 1.5857 12 7 6.5369 -0.6815 0.3741 13 6 6.2213 -1.6566 -0.5364 14 1 6.8703 -1.8380 -1.3804 15 6 5.0693 -2.4156 -0.3702 16 7 4.4806 -2.4681 0.8035 17 14 4.3572 -3.3614 -1.8152 18 1 5.2012 -3.1386 -3.0167 19 1 4.3288 -4.8106 -1.4926 20 1 2.9761 -2.8871 -2.0850 21 6 7.8700 -0.6498 0.9810 22 6 8.7869 0.1959 0.1353 23 8 8.3696 0.7189 -0.8707 24 8 10.0669 0.3689 0.5004 25 6 3.3589 1.2632 0.7213 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.6616 2.7668 -1.4425 30 1 1.2569 1.8013 -1.9564 31 1 3.2990 1.1288 -3.1915 32 1 2.7081 -0.1985 -2.1636 33 1 4.9435 1.7506 -1.4424 34 1 5.1656 0.0613 -1.9564 35 1 4.8308 -1.9503 1.5453 36 1 7.8033 -0.2240 1.9821 37 1 8.2651 -1.6637 1.0429 38 1 10.6165 0.9200 -0.0735 39 1 3.2107 0.9311 1.7489 40 1 3.8023 2.2589 0.7213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610234881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:45 Heat of formation + Delta-G solvation = -177.925951 kcal Electronic energy + Delta-G solvation = -24827.499510 eV Core-core repulsion = 21221.253617 eV Total energy + Delta-G solvation = -3606.245893 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.94977 -39.22432 -37.96197 -35.61863 -35.14315 -34.79569 -31.95806 -30.13731 -29.61246 -27.58752 -26.13113 -24.60853 -22.82677 -21.84777 -21.04233 -19.66079 -18.93314 -17.59809 -17.30605 -16.03289 -15.80400 -15.71270 -15.23706 -15.09357 -14.75071 -14.42192 -14.04102 -13.89341 -13.61457 -13.00691 -12.91410 -12.34326 -12.15344 -12.01426 -11.84538 -11.59004 -11.51398 -11.32579 -10.99472 -10.92223 -10.79215 -10.52199 -10.34349 -10.24476 -10.04047 -9.87771 -9.69254 -9.48625 -9.02552 -8.69886 -8.32147 -7.66387 -6.71645 -4.24661 2.84837 3.29711 3.33019 3.41264 3.49401 4.02034 4.24015 4.27259 4.63820 4.98660 5.19787 5.26622 5.43537 5.56775 5.61100 5.79189 5.87914 5.92262 5.92972 5.97915 6.00071 6.09798 6.12255 6.14257 6.24876 6.35981 6.52283 6.68738 6.79715 6.90661 6.94851 6.96850 7.23015 7.46100 7.60510 7.69775 8.13172 8.22182 8.48102 9.07169 9.31777 9.75596 10.59205 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.007565 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.807509 B = 3700.335355 C = 4445.370613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.091 3.909 4 H 0.052 0.948 5 C -0.138 4.138 6 C -0.112 4.112 7 C -0.099 4.099 8 C -0.104 4.104 9 H 0.142 0.858 10 C 0.509 3.491 11 O -0.605 6.605 12 N -0.449 5.449 13 C -0.420 4.420 14 H 0.075 0.925 15 C 0.021 3.979 16 N -0.859 5.859 17 Si 1.072 2.928 18 H -0.282 1.282 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.117 3.883 22 C 0.460 3.540 23 O -0.504 6.504 24 O -0.528 6.528 25 C -0.093 4.093 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.277 0.723 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.398 0.602 39 H 0.064 0.936 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 3.732 -3.203 5.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.033 3.967 4 H 0.070 0.930 5 C -0.176 4.176 6 C -0.150 4.150 7 C -0.137 4.137 8 C -0.125 4.125 9 H 0.159 0.841 10 C 0.301 3.699 11 O -0.490 6.490 12 N -0.170 5.170 13 C -0.548 4.548 14 H 0.092 0.908 15 C -0.188 4.188 16 N -0.492 5.492 17 Si 0.897 3.103 18 H -0.207 1.207 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.009 4.009 22 C 0.300 3.700 23 O -0.390 6.390 24 O -0.339 6.339 25 C -0.131 4.131 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.255 0.745 39 H 0.083 0.917 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.034 2.814 -3.223 5.881 hybrid contribution 1.554 1.669 0.066 2.281 sum -2.480 4.483 -3.157 6.018 Atomic orbital electron populations 1.22717 0.82638 1.02268 0.98944 1.88124 1.18108 1.27220 1.94810 1.22148 0.94934 0.84466 0.95137 0.92973 1.22020 0.99568 0.99542 0.96482 1.21440 0.95824 0.99988 0.97711 1.21326 0.96625 1.00843 0.94855 1.21443 0.92425 1.04395 0.94188 0.84143 1.20843 0.87046 0.78814 0.83216 1.90491 1.81374 1.42145 1.35011 1.43190 1.07781 1.25884 1.40139 1.20121 1.12899 1.16318 1.05447 0.90770 1.26516 0.94833 0.95978 1.01443 1.70688 1.42603 1.35655 1.00237 0.83446 0.77011 0.75989 0.73810 1.20710 1.20987 1.19734 1.20911 0.85224 0.99010 0.95730 1.24808 0.80524 0.79403 0.85231 1.90661 1.75746 1.46408 1.26226 1.84582 1.24169 1.68393 1.56750 1.21421 0.92649 1.00030 0.98973 0.94820 0.90002 0.94753 0.91566 0.92613 0.92735 0.91094 0.93654 0.89710 0.91163 0.87844 0.87237 0.74514 0.91741 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.82 101.05 1.09 1.53 16 2 O -0.36 -6.87 9.00 -35.23 -0.32 -7.18 16 3 C 0.09 1.59 2.92 -26.73 -0.08 1.51 16 4 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 5 C -0.14 -2.19 5.63 -26.74 -0.15 -2.34 16 6 C -0.11 -2.01 5.78 -26.74 -0.15 -2.17 16 7 C -0.10 -2.11 5.06 -26.73 -0.14 -2.24 16 8 C -0.10 -2.42 1.46 -91.77 -0.13 -2.56 16 9 H 0.14 3.57 3.91 -51.93 -0.20 3.36 16 10 C 0.51 13.11 5.58 -10.99 -0.06 13.05 16 11 O -0.61 -16.51 15.53 5.55 0.09 -16.43 16 12 N -0.45 -11.21 1.64 -116.10 -0.19 -11.40 16 13 C -0.42 -10.68 7.22 -14.93 -0.11 -10.79 16 14 H 0.07 1.93 7.90 -52.48 -0.41 1.51 16 15 C 0.02 0.54 3.43 -17.47 -0.06 0.48 16 16 N -0.86 -23.11 11.90 55.50 0.66 -22.45 16 17 Si 1.07 22.90 29.96 -169.99 -5.09 17.80 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 21 C 0.12 2.53 6.01 -5.19 -0.03 2.50 16 22 C 0.46 9.47 8.40 36.00 0.30 9.77 16 23 O -0.50 -11.99 17.19 -18.75 -0.32 -12.31 16 24 O -0.53 -8.40 13.42 -39.25 -0.53 -8.93 16 25 C -0.09 -1.93 4.29 -26.73 -0.11 -2.05 16 26 H 0.03 0.41 7.87 -51.93 -0.41 0.00 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.77 7.87 -51.93 -0.41 0.36 16 31 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 32 H 0.07 1.37 7.68 -51.93 -0.40 0.97 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.96 6.57 -51.93 -0.34 1.62 16 35 H 0.28 7.77 7.08 -40.82 -0.29 7.48 16 36 H 0.10 2.20 7.36 -51.93 -0.38 1.82 16 37 H 0.11 2.15 8.04 -51.93 -0.42 1.73 16 38 H 0.40 4.45 9.10 45.56 0.41 4.86 16 39 H 0.06 1.42 8.14 -51.92 -0.42 0.99 16 40 H 0.07 1.42 7.99 -51.93 -0.42 1.00 16 LS Contribution 324.51 15.07 4.89 4.89 Total: -1.00 -31.78 324.51 -5.44 -37.23 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -5.00 Total: 12.09 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 0.37 Total: 6.70 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.47 Total: -33.85 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -1.08 Total: -44.85 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.09 Total: 17.80 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.78 -5.44 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610234881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.700 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds