Wall clock time and date at job start Tue Mar 31 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00091 * 2 1 4 4 H 1.09003 * 109.47728 * 29.99764 * 3 2 1 5 5 C 1.53000 * 109.46974 * 269.99303 * 3 2 1 6 6 C 1.52990 * 109.47311 * 300.00159 * 5 3 2 7 7 C 1.52996 * 109.47562 * 299.99737 * 6 5 3 8 8 C 1.53000 * 109.47104 * 59.99968 * 7 6 5 9 9 H 1.09006 * 109.46960 * 60.00148 * 8 7 6 10 10 C 1.50697 * 109.47410 * 180.02562 * 8 7 6 11 11 O 1.21292 * 119.99720 * 110.38314 * 10 8 7 12 12 N 1.34772 * 119.99890 * 290.38208 * 10 8 7 13 13 C 1.37092 * 120.00455 * 354.67763 * 12 10 8 14 14 H 1.08004 * 120.00517 * 128.74605 * 13 12 10 15 15 C 1.38953 * 119.99710 * 308.47222 * 13 12 10 16 16 N 1.31409 * 119.99930 * 341.58688 * 15 13 12 17 17 Si 1.86804 * 120.00288 * 161.58597 * 15 13 12 18 18 H 1.48505 * 109.46697 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46997 * 119.99890 * 17 15 13 20 20 H 1.48495 * 109.47113 * 240.00160 * 17 15 13 21 21 C 1.46509 * 119.99787 * 174.66937 * 12 10 8 22 22 C 1.50696 * 109.47080 * 270.00227 * 21 12 10 23 23 O 1.20820 * 120.00286 * 0.02562 * 22 21 12 24 24 O 1.34226 * 119.99654 * 179.97438 * 22 21 12 25 25 C 1.53000 * 109.47004 * 300.00478 * 8 7 6 26 26 H 1.09005 * 109.47047 * 59.99892 * 1 2 3 27 27 H 1.08997 * 109.47909 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47506 * 300.00639 * 1 2 3 29 29 H 1.09006 * 109.47097 * 180.02562 * 5 3 2 30 30 H 1.09004 * 109.46945 * 60.00540 * 5 3 2 31 31 H 1.09008 * 109.47204 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47112 * 60.00195 * 6 5 3 33 33 H 1.08997 * 109.47282 * 300.00355 * 7 6 5 34 34 H 1.09000 * 109.47650 * 180.02562 * 7 6 5 35 35 H 0.97001 * 120.00335 * 2.32935 * 16 15 13 36 36 H 1.08997 * 109.46682 * 30.00745 * 21 12 10 37 37 H 1.08996 * 109.46817 * 150.00407 * 21 12 10 38 38 H 0.96703 * 117.00337 * 180.02562 * 24 22 21 39 39 H 1.09008 * 109.47269 * 179.97438 * 25 8 7 40 40 H 1.08997 * 109.47028 * 299.99395 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2178 1.7712 -1.4425 6 6 3.1515 0.7972 -2.1636 7 6 4.5002 0.7549 -1.4424 8 6 4.2927 0.2891 0.0001 9 1 3.8493 -0.7067 0.0002 10 6 5.6210 0.2481 0.7108 11 8 5.8657 1.0516 1.5857 12 7 6.5369 -0.6815 0.3741 13 6 6.2213 -1.6566 -0.5364 14 1 6.8703 -1.8380 -1.3804 15 6 5.0693 -2.4156 -0.3702 16 7 4.4806 -2.4681 0.8035 17 14 4.3572 -3.3614 -1.8152 18 1 5.2012 -3.1386 -3.0167 19 1 4.3288 -4.8106 -1.4926 20 1 2.9761 -2.8871 -2.0850 21 6 7.8700 -0.6498 0.9810 22 6 8.7869 0.1959 0.1353 23 8 8.3696 0.7189 -0.8707 24 8 10.0669 0.3689 0.5004 25 6 3.3589 1.2632 0.7213 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 2.6616 2.7668 -1.4425 30 1 1.2569 1.8013 -1.9564 31 1 3.2990 1.1288 -3.1915 32 1 2.7081 -0.1985 -2.1636 33 1 4.9435 1.7506 -1.4424 34 1 5.1656 0.0613 -1.9564 35 1 4.8308 -1.9503 1.5453 36 1 7.8033 -0.2240 1.9821 37 1 8.2651 -1.6637 1.0429 38 1 10.6165 0.9200 -0.0735 39 1 3.2107 0.9311 1.7489 40 1 3.8023 2.2589 0.7213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610234881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:44 Heat of formation + Delta-G solvation = -199.184810 kcal Electronic energy + Delta-G solvation = -24828.421363 eV Core-core repulsion = 21221.253617 eV Total energy + Delta-G solvation = -3607.167746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.70703 -40.83682 -39.52969 -37.21401 -36.79793 -36.58831 -33.84650 -31.74678 -31.12594 -29.34750 -27.27261 -26.57653 -24.48042 -23.36193 -22.62989 -21.48957 -20.49553 -19.24140 -19.10213 -17.71773 -17.62272 -17.25723 -16.73011 -16.65550 -16.24201 -16.03940 -15.71907 -15.55063 -15.29368 -14.63775 -14.42461 -13.97887 -13.79774 -13.56679 -13.43264 -13.29382 -13.06113 -12.85235 -12.63897 -12.54796 -12.16102 -12.08850 -11.93014 -11.89291 -11.75933 -11.61485 -11.30281 -11.02121 -10.61946 -10.40716 -10.18447 -9.63633 -8.75489 -6.28674 1.18298 1.55748 1.60617 1.73333 1.82417 2.19602 2.50829 2.83726 2.99952 3.04506 3.82438 3.86542 4.00395 4.16549 4.31935 4.34625 4.37126 4.43485 4.45576 4.52344 4.59244 4.64469 4.68464 4.71953 4.87594 4.96346 4.97319 5.08199 5.27504 5.35623 5.40164 5.50873 5.52484 5.60877 5.71384 6.04083 6.21567 6.47496 6.98093 7.07490 7.33719 7.78062 8.53621 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.007565 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.807509 B = 3700.335355 C = 4445.370613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.094 3.906 4 H 0.080 0.920 5 C -0.133 4.133 6 C -0.108 4.108 7 C -0.092 4.092 8 C -0.104 4.104 9 H 0.124 0.876 10 C 0.493 3.507 11 O -0.632 6.632 12 N -0.457 5.457 13 C -0.423 4.423 14 H 0.067 0.933 15 C -0.003 4.003 16 N -0.874 5.874 17 Si 1.105 2.895 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.266 1.266 21 C 0.107 3.893 22 C 0.472 3.528 23 O -0.541 6.541 24 O -0.507 6.507 25 C -0.091 4.091 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.258 0.742 36 H 0.104 0.896 37 H 0.128 0.872 38 H 0.424 0.576 39 H 0.039 0.961 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.580 4.166 -4.647 7.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C 0.036 3.964 4 H 0.098 0.902 5 C -0.170 4.170 6 C -0.145 4.145 7 C -0.130 4.130 8 C -0.125 4.125 9 H 0.141 0.859 10 C 0.285 3.715 11 O -0.520 6.520 12 N -0.178 5.178 13 C -0.550 4.550 14 H 0.084 0.916 15 C -0.208 4.208 16 N -0.508 5.508 17 Si 0.925 3.075 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.191 1.191 21 C -0.019 4.019 22 C 0.313 3.687 23 O -0.430 6.430 24 O -0.320 6.320 25 C -0.129 4.129 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.145 0.855 38 H 0.285 0.715 39 H 0.058 0.942 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.863 3.248 -4.662 7.478 hybrid contribution 1.973 1.541 0.589 2.572 sum -2.890 4.788 -4.072 6.918 Atomic orbital electron populations 1.22934 0.80271 1.03203 1.00728 1.88073 1.20825 1.28043 1.95099 1.22133 0.93246 0.84848 0.96151 0.90174 1.22009 1.00620 0.99246 0.95133 1.21412 0.93948 1.00194 0.98967 1.21252 0.98462 0.99528 0.93774 1.21433 0.91394 1.04202 0.95435 0.85918 1.21450 0.88242 0.78584 0.83193 1.90445 1.82149 1.43215 1.36178 1.43331 1.08941 1.25530 1.39978 1.20140 1.13126 1.16207 1.05502 0.91566 1.27607 0.94584 0.96243 1.02321 1.70815 1.43018 1.36390 1.00542 0.83075 0.76994 0.75409 0.72070 1.19052 1.20117 1.19119 1.21053 0.84419 1.00530 0.95851 1.24334 0.81627 0.78520 0.84179 1.90653 1.76804 1.47878 1.27682 1.84492 1.22238 1.68495 1.56817 1.21390 0.94621 0.98932 0.97952 0.92509 0.89647 0.93374 0.90256 0.89452 0.90127 0.92475 0.94238 0.92105 0.93099 0.87823 0.85462 0.71502 0.94178 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 10.82 113.37 1.23 1.86 16 2 O -0.40 -14.56 9.00 -148.98 -1.34 -15.90 16 3 C 0.09 3.10 2.92 30.60 0.09 3.19 16 4 H 0.08 2.19 7.79 -2.39 -0.02 2.17 16 5 C -0.13 -3.79 5.63 30.59 0.17 -3.61 16 6 C -0.11 -3.66 5.78 30.59 0.18 -3.48 16 7 C -0.09 -3.94 5.06 30.59 0.15 -3.78 16 8 C -0.10 -4.94 1.46 -11.54 -0.02 -4.95 16 9 H 0.12 6.37 3.91 -2.38 -0.01 6.36 16 10 C 0.49 26.17 5.58 87.66 0.49 26.66 16 11 O -0.63 -35.70 15.53 -3.07 -0.05 -35.75 16 12 N -0.46 -23.40 1.64 -639.60 -1.05 -24.45 16 13 C -0.42 -21.81 7.22 84.04 0.61 -21.20 16 14 H 0.07 3.49 7.90 -2.91 -0.02 3.47 16 15 C 0.00 -0.15 3.43 84.93 0.29 0.14 16 16 N -0.87 -48.00 11.90 21.66 0.26 -47.74 16 17 Si 1.10 45.52 29.96 68.60 2.06 47.58 16 18 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 21 C 0.11 4.66 6.01 85.63 0.51 5.17 16 22 C 0.47 19.22 8.40 71.23 0.60 19.81 16 23 O -0.54 -25.78 17.19 21.98 0.38 -25.40 16 24 O -0.51 -15.18 13.42 -51.38 -0.69 -15.87 16 25 C -0.09 -3.82 4.29 30.60 0.13 -3.69 16 26 H 0.06 1.18 7.87 -2.38 -0.02 1.16 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 1.08 8.09 -2.38 -0.02 1.06 16 29 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.09 2.00 7.87 -2.38 -0.02 1.98 16 31 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.06 2.11 7.68 -2.39 -0.02 2.09 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 2.85 6.57 -2.39 -0.02 2.83 16 35 H 0.26 15.06 7.08 -92.71 -0.66 14.40 16 36 H 0.10 4.50 7.36 -2.39 -0.02 4.49 16 37 H 0.13 5.00 8.04 -2.39 -0.02 4.98 16 38 H 0.42 8.38 9.10 -74.06 -0.67 7.71 16 39 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.07 2.77 7.99 -2.39 -0.02 2.75 16 Total: -1.00 -70.39 324.51 4.49 -65.89 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.50 Total: 35.53 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 4.43 Total: 16.11 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -0.79 Total: -72.19 kcal Atomic # 8 Polarization: -91.22 SS G_CDS: -1.70 Total: -92.92 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.06 Total: 47.58 kcal Total: -70.39 4.49 -65.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610234881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.290 kcal (2) G-P(sol) polarization free energy of solvation -70.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds