Wall clock time and date at job start Tue Mar 31 2020 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 113.99955 * 2 1 4 4 H 1.09001 * 109.47406 * 330.00089 * 3 2 1 5 5 C 1.52999 * 109.47063 * 90.00357 * 3 2 1 6 6 C 1.53000 * 109.47563 * 59.99818 * 5 3 2 7 7 C 1.53003 * 109.46868 * 59.99807 * 6 5 3 8 8 C 1.52998 * 109.47549 * 300.00339 * 7 6 5 9 9 H 1.09001 * 109.47061 * 300.00461 * 8 7 6 10 10 C 1.50696 * 109.47347 * 179.97438 * 8 7 6 11 11 O 1.21293 * 120.00366 * 266.98954 * 10 8 7 12 12 N 1.34777 * 119.99700 * 86.98925 * 10 8 7 13 13 C 1.37097 * 119.99961 * 183.89230 * 12 10 8 14 14 H 1.07998 * 119.99671 * 129.25699 * 13 12 10 15 15 C 1.38945 * 120.00105 * 309.25506 * 13 12 10 16 16 N 1.31418 * 119.99947 * 166.12600 * 15 13 12 17 17 Si 1.86796 * 120.00409 * 346.12396 * 15 13 12 18 18 H 1.48492 * 109.47239 * 94.77890 * 17 15 13 19 19 H 1.48498 * 109.47414 * 214.78577 * 17 15 13 20 20 H 1.48504 * 109.46689 * 334.78279 * 17 15 13 21 21 C 1.46510 * 119.99851 * 3.89812 * 12 10 8 22 22 C 1.50692 * 109.46760 * 265.83054 * 21 12 10 23 23 O 1.20825 * 120.00487 * 0.02562 * 22 21 12 24 24 O 1.34233 * 120.00098 * 179.72750 * 22 21 12 25 25 C 1.52998 * 109.47101 * 209.99983 * 3 2 1 26 26 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46837 * 299.99462 * 1 2 3 28 28 H 1.08991 * 109.47140 * 59.99713 * 1 2 3 29 29 H 1.09007 * 109.47074 * 180.02562 * 5 3 2 30 30 H 1.08998 * 109.47327 * 299.99777 * 5 3 2 31 31 H 1.08996 * 109.47479 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.47060 * 300.00289 * 6 5 3 33 33 H 1.08994 * 109.47075 * 180.02562 * 7 6 5 34 34 H 1.09007 * 109.46791 * 60.00201 * 7 6 5 35 35 H 0.96995 * 119.99885 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.46649 * 145.83233 * 21 12 10 37 37 H 1.08993 * 109.47224 * 25.83662 * 21 12 10 38 38 H 0.96692 * 117.00249 * 180.27693 * 24 22 21 39 39 H 1.09010 * 109.47347 * 180.02562 * 25 3 2 40 40 H 1.08996 * 109.47047 * 60.00262 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.1515 0.7973 2.1638 7 6 4.5002 0.7550 1.4424 8 6 4.2927 0.2892 -0.0001 9 1 3.8493 -0.7066 -0.0001 10 6 5.6210 0.2482 -0.7107 11 8 5.9993 1.2101 -1.3453 12 7 6.3887 -0.8574 -0.6409 13 6 7.6314 -0.8667 -1.2200 14 1 8.4903 -1.1882 -0.6498 15 6 7.7856 -0.4624 -2.5403 16 7 8.9849 -0.2088 -3.0140 17 14 6.2884 -0.2794 -3.6422 18 1 5.8341 1.1342 -3.6293 19 1 6.6436 -0.6726 -5.0294 20 1 5.1971 -1.1546 -3.1437 21 6 5.8952 -2.0493 0.0535 22 6 6.3814 -2.0369 1.4798 23 8 7.0691 -1.1258 1.8758 24 8 6.0454 -3.0350 2.3121 25 6 3.3588 1.2632 -0.7212 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 2.6606 2.7673 1.4425 30 1 1.2569 1.8013 1.9564 31 1 3.2990 1.1289 3.1915 32 1 2.7082 -0.1985 2.1638 33 1 5.1653 0.0608 1.9560 34 1 4.9435 1.7509 1.4424 35 1 9.0926 0.0737 -3.9357 36 1 6.2663 -2.9424 -0.4491 37 1 4.8053 -2.0518 0.0411 38 1 6.3776 -2.9813 3.2186 39 1 3.8025 2.2590 -0.7209 40 1 3.2111 0.9313 -1.7489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610234884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:47 Heat of formation + Delta-G solvation = -164.884369 kcal Electronic energy + Delta-G solvation = -24681.594996 eV Core-core repulsion = 21075.914629 eV Total energy + Delta-G solvation = -3605.680368 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.26388 -39.37617 -38.24665 -35.76578 -35.61362 -34.42626 -32.15258 -30.67502 -30.03568 -27.93204 -26.53342 -25.07822 -22.65242 -22.36659 -21.45713 -19.94101 -18.81136 -17.69887 -17.37109 -16.45246 -16.07683 -15.79527 -15.60466 -15.39160 -15.21774 -14.67634 -14.39100 -13.93473 -13.52213 -13.23133 -12.96198 -12.68747 -12.52871 -12.27930 -12.11216 -12.03450 -11.82708 -11.63501 -11.32289 -11.05709 -10.97224 -10.85956 -10.71906 -10.41441 -10.09683 -10.02894 -9.94999 -9.91575 -9.45055 -8.62472 -8.43382 -7.66812 -6.16281 -4.04354 2.72437 3.19750 3.40388 3.43884 3.61760 3.79737 3.94802 4.35124 4.52828 4.81349 4.84934 4.97911 5.14537 5.20560 5.25856 5.32201 5.38566 5.47472 5.52361 5.56820 5.61058 5.65429 5.72864 5.82984 5.92323 5.97880 6.06075 6.12974 6.23212 6.35080 6.40094 6.53791 6.66653 6.89459 7.22843 7.84819 8.02622 8.39179 8.74996 8.89604 9.40912 9.75718 10.89904 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015035 B = 0.007921 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.832043 B = 3534.127377 C = 4603.214880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.090 3.910 4 H 0.060 0.940 5 C -0.139 4.139 6 C -0.110 4.110 7 C -0.107 4.107 8 C -0.105 4.105 9 H 0.089 0.911 10 C 0.476 3.524 11 O -0.533 6.533 12 N -0.455 5.455 13 C -0.344 4.344 14 H 0.092 0.908 15 C 0.092 3.908 16 N -0.870 5.870 17 Si 0.905 3.095 18 H -0.259 1.259 19 H -0.304 1.304 20 H -0.276 1.276 21 C 0.109 3.891 22 C 0.454 3.546 23 O -0.492 6.492 24 O -0.527 6.527 25 C -0.098 4.098 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.272 0.728 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.400 0.600 39 H 0.088 0.912 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.784 -2.193 9.016 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.032 3.968 4 H 0.078 0.922 5 C -0.177 4.177 6 C -0.147 4.147 7 C -0.145 4.145 8 C -0.126 4.126 9 H 0.107 0.893 10 C 0.265 3.735 11 O -0.412 6.412 12 N -0.178 5.178 13 C -0.470 4.470 14 H 0.109 0.891 15 C -0.116 4.116 16 N -0.505 5.505 17 Si 0.734 3.266 18 H -0.184 1.184 19 H -0.233 1.233 20 H -0.202 1.202 21 C -0.017 4.017 22 C 0.293 3.707 23 O -0.378 6.378 24 O -0.338 6.338 25 C -0.136 4.136 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.257 0.743 39 H 0.106 0.894 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.269 -1.555 8.230 18.299 hybrid contribution -0.543 0.273 0.125 0.621 sum -16.813 -1.282 8.355 18.818 Atomic orbital electron populations 1.22744 0.81902 1.02411 0.99537 1.87951 1.18850 1.27982 1.94987 1.22190 0.94822 0.84344 0.95408 0.92190 1.22019 0.99751 0.99849 0.96097 1.21413 0.95198 0.99967 0.98147 1.21483 0.96962 1.02578 0.93502 1.21292 0.94370 1.00962 0.96009 0.89315 1.20561 0.86773 0.83005 0.83121 1.90532 1.73455 1.34687 1.42571 1.43318 1.16999 1.08138 1.49346 1.18773 0.82915 1.50048 0.95255 0.89066 1.25355 0.96732 0.92580 0.96968 1.69716 1.22696 1.41751 1.16303 0.86399 0.82635 0.79786 0.77750 1.18407 1.23258 1.20155 1.21226 1.00266 0.94066 0.86148 1.24737 0.77647 0.78769 0.89515 1.90731 1.34638 1.35582 1.76816 1.84573 1.73068 1.49807 1.26400 1.21501 0.92300 1.01062 0.98760 0.89907 0.94416 0.94360 0.90949 0.92210 0.92240 0.91344 0.91220 0.91457 0.91807 0.86468 0.87666 0.74271 0.89402 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.39 16 2 O -0.38 -5.01 9.00 -35.23 -0.32 -5.32 16 3 C 0.09 1.17 2.92 -26.73 -0.08 1.10 16 4 H 0.06 0.68 7.79 -51.93 -0.40 0.28 16 5 C -0.14 -1.64 5.63 -26.73 -0.15 -1.79 16 6 C -0.11 -1.42 5.78 -26.73 -0.15 -1.57 16 7 C -0.11 -1.79 5.19 -26.73 -0.14 -1.92 16 8 C -0.10 -1.93 1.78 -91.77 -0.16 -2.09 16 9 H 0.09 1.52 5.41 -51.93 -0.28 1.24 16 10 C 0.48 11.43 5.09 -10.99 -0.06 11.37 16 11 O -0.53 -14.88 12.21 5.55 0.07 -14.81 16 12 N -0.45 -11.07 1.54 -116.10 -0.18 -11.25 16 13 C -0.34 -9.92 9.51 -14.94 -0.14 -10.06 16 14 H 0.09 2.85 8.06 -52.49 -0.42 2.42 16 15 C 0.09 2.75 4.98 -17.47 -0.09 2.66 16 16 N -0.87 -26.99 13.96 55.50 0.77 -26.21 16 17 Si 0.90 23.97 24.89 -169.99 -4.23 19.74 16 18 H -0.26 -7.17 6.55 56.52 0.37 -6.80 16 19 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.11 2.04 5.83 -5.19 -0.03 2.01 16 22 C 0.45 8.09 7.21 36.00 0.26 8.35 16 23 O -0.49 -10.69 15.74 -18.75 -0.30 -10.98 16 24 O -0.53 -7.01 13.42 -39.27 -0.53 -7.54 16 25 C -0.10 -1.65 4.50 -26.73 -0.12 -1.77 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 28 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 33 H 0.07 1.24 5.24 -51.93 -0.27 0.96 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.27 7.91 8.31 -40.82 -0.34 7.57 16 36 H 0.12 2.01 8.07 -51.93 -0.42 1.59 16 37 H 0.11 1.65 5.71 -51.93 -0.30 1.36 16 38 H 0.40 3.61 9.10 45.56 0.41 4.03 16 39 H 0.09 1.53 7.86 -51.92 -0.41 1.12 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -36.41 318.52 -4.68 -41.09 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.01 Total: 2.83 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 0.23 Total: 7.65 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.60 Total: -37.46 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.07 Total: -38.65 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -4.23 Total: 19.74 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.41 -4.68 -41.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610234884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.797 kcal (2) G-P(sol) polarization free energy of solvation -36.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds