Wall clock time and date at job start Tue Mar 31 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 113.99955 * 2 1 4 4 H 1.09001 * 109.47406 * 330.00089 * 3 2 1 5 5 C 1.52999 * 109.47063 * 90.00357 * 3 2 1 6 6 C 1.53000 * 109.47563 * 59.99818 * 5 3 2 7 7 C 1.53003 * 109.46868 * 59.99807 * 6 5 3 8 8 C 1.52998 * 109.47549 * 300.00339 * 7 6 5 9 9 H 1.09001 * 109.47061 * 300.00461 * 8 7 6 10 10 C 1.50696 * 109.47347 * 179.97438 * 8 7 6 11 11 O 1.21293 * 120.00366 * 266.98954 * 10 8 7 12 12 N 1.34777 * 119.99700 * 86.98925 * 10 8 7 13 13 C 1.37097 * 119.99961 * 183.89230 * 12 10 8 14 14 H 1.07998 * 119.99671 * 129.25699 * 13 12 10 15 15 C 1.38945 * 120.00105 * 309.25506 * 13 12 10 16 16 N 1.31418 * 119.99947 * 166.12600 * 15 13 12 17 17 Si 1.86796 * 120.00409 * 346.12396 * 15 13 12 18 18 H 1.48492 * 109.47239 * 94.77890 * 17 15 13 19 19 H 1.48498 * 109.47414 * 214.78577 * 17 15 13 20 20 H 1.48504 * 109.46689 * 334.78279 * 17 15 13 21 21 C 1.46510 * 119.99851 * 3.89812 * 12 10 8 22 22 C 1.50692 * 109.46760 * 265.83054 * 21 12 10 23 23 O 1.20825 * 120.00487 * 0.02562 * 22 21 12 24 24 O 1.34233 * 120.00098 * 179.72750 * 22 21 12 25 25 C 1.52998 * 109.47101 * 209.99983 * 3 2 1 26 26 H 1.09003 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46837 * 299.99462 * 1 2 3 28 28 H 1.08991 * 109.47140 * 59.99713 * 1 2 3 29 29 H 1.09007 * 109.47074 * 180.02562 * 5 3 2 30 30 H 1.08998 * 109.47327 * 299.99777 * 5 3 2 31 31 H 1.08996 * 109.47479 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.47060 * 300.00289 * 6 5 3 33 33 H 1.08994 * 109.47075 * 180.02562 * 7 6 5 34 34 H 1.09007 * 109.46791 * 60.00201 * 7 6 5 35 35 H 0.96995 * 119.99885 * 180.02562 * 16 15 13 36 36 H 1.09000 * 109.46649 * 145.83233 * 21 12 10 37 37 H 1.08993 * 109.47224 * 25.83662 * 21 12 10 38 38 H 0.96692 * 117.00249 * 180.27693 * 24 22 21 39 39 H 1.09010 * 109.47347 * 180.02562 * 25 3 2 40 40 H 1.08996 * 109.47047 * 60.00262 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.1515 0.7973 2.1638 7 6 4.5002 0.7550 1.4424 8 6 4.2927 0.2892 -0.0001 9 1 3.8493 -0.7066 -0.0001 10 6 5.6210 0.2482 -0.7107 11 8 5.9993 1.2101 -1.3453 12 7 6.3887 -0.8574 -0.6409 13 6 7.6314 -0.8667 -1.2200 14 1 8.4903 -1.1882 -0.6498 15 6 7.7856 -0.4624 -2.5403 16 7 8.9849 -0.2088 -3.0140 17 14 6.2884 -0.2794 -3.6422 18 1 5.8341 1.1342 -3.6293 19 1 6.6436 -0.6726 -5.0294 20 1 5.1971 -1.1546 -3.1437 21 6 5.8952 -2.0493 0.0535 22 6 6.3814 -2.0369 1.4798 23 8 7.0691 -1.1258 1.8758 24 8 6.0454 -3.0350 2.3121 25 6 3.3588 1.2632 -0.7212 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 2.6606 2.7673 1.4425 30 1 1.2569 1.8013 1.9564 31 1 3.2990 1.1289 3.1915 32 1 2.7082 -0.1985 2.1638 33 1 5.1653 0.0608 1.9560 34 1 4.9435 1.7509 1.4424 35 1 9.0926 0.0737 -3.9357 36 1 6.2663 -2.9424 -0.4491 37 1 4.8053 -2.0518 0.0411 38 1 6.3776 -2.9813 3.2186 39 1 3.8025 2.2590 -0.7209 40 1 3.2111 0.9313 -1.7489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610234884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:46 Heat of formation + Delta-G solvation = -192.336139 kcal Electronic energy + Delta-G solvation = -24682.785394 eV Core-core repulsion = 21075.914629 eV Total energy + Delta-G solvation = -3606.870766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.81776 -40.71141 -39.64501 -37.12887 -36.81946 -36.28211 -34.28497 -31.97631 -31.18746 -29.62774 -27.28716 -26.94096 -24.22023 -23.50647 -22.88675 -21.37728 -20.32605 -19.28200 -19.00788 -17.90948 -17.55431 -17.25596 -16.96796 -16.82229 -16.45156 -16.00614 -15.60989 -15.46549 -15.32207 -14.86243 -14.43721 -14.22679 -13.91460 -13.57202 -13.47634 -13.31240 -13.21887 -13.07734 -12.89777 -12.56915 -12.37967 -12.21064 -12.14123 -12.00990 -11.71829 -11.61304 -11.36818 -11.11829 -10.86443 -10.45702 -10.25173 -9.70002 -8.43675 -6.32513 1.21095 1.30370 1.33788 1.45501 1.70734 2.22503 2.40075 2.67291 2.91892 2.98732 3.61710 3.72195 3.76317 3.99811 4.13787 4.23105 4.24062 4.39007 4.42620 4.50903 4.54137 4.59488 4.64887 4.68909 4.69641 4.88460 4.98577 5.03015 5.14425 5.17841 5.23862 5.27677 5.46985 5.65794 5.69996 5.86910 6.37330 6.66099 6.83434 7.10038 7.23401 7.76203 8.66384 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015035 B = 0.007921 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.832043 B = 3534.127377 C = 4603.214880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.098 3.902 4 H 0.080 0.920 5 C -0.137 4.137 6 C -0.101 4.101 7 C -0.103 4.103 8 C -0.093 4.093 9 H 0.108 0.892 10 C 0.467 3.533 11 O -0.582 6.582 12 N -0.469 5.469 13 C -0.339 4.339 14 H 0.053 0.947 15 C 0.043 3.957 16 N -0.916 5.916 17 Si 0.959 3.041 18 H -0.282 1.282 19 H -0.295 1.295 20 H -0.249 1.249 21 C 0.101 3.899 22 C 0.468 3.532 23 O -0.539 6.539 24 O -0.504 6.504 25 C -0.101 4.101 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.274 0.726 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.424 0.576 39 H 0.071 0.929 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.654 -3.381 10.546 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.040 3.960 4 H 0.098 0.902 5 C -0.175 4.175 6 C -0.138 4.138 7 C -0.142 4.142 8 C -0.114 4.114 9 H 0.126 0.874 10 C 0.258 3.742 11 O -0.465 6.465 12 N -0.192 5.192 13 C -0.466 4.466 14 H 0.071 0.929 15 C -0.161 4.161 16 N -0.553 5.553 17 Si 0.787 3.213 18 H -0.209 1.209 19 H -0.223 1.223 20 H -0.172 1.172 21 C -0.024 4.024 22 C 0.309 3.691 23 O -0.428 6.428 24 O -0.317 6.317 25 C -0.139 4.139 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.151 0.849 37 H 0.161 0.839 38 H 0.285 0.715 39 H 0.090 0.910 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.175 -2.819 9.811 22.610 hybrid contribution 0.677 0.590 -0.197 0.919 sum -19.498 -2.229 9.615 21.853 Atomic orbital electron populations 1.22961 0.79850 1.03689 1.00675 1.87899 1.21044 1.27704 1.95153 1.22055 0.92834 0.85163 0.95925 0.90194 1.22028 1.00856 0.99354 0.95212 1.21372 0.92819 1.01045 0.98574 1.21466 0.99255 1.00866 0.92568 1.21290 0.91084 1.02654 0.96402 0.87402 1.21646 0.88437 0.82008 0.82079 1.90495 1.75039 1.36366 1.44563 1.43437 1.15679 1.10323 1.49753 1.18551 0.84203 1.49051 0.94807 0.92941 1.26069 0.98926 0.92629 0.98485 1.69815 1.24580 1.44064 1.16887 0.85522 0.80453 0.78715 0.76658 1.20932 1.22304 1.17226 1.21472 1.02403 0.92111 0.86382 1.24322 0.76537 0.78628 0.89590 1.90738 1.36815 1.37627 1.77656 1.84483 1.72195 1.47348 1.27670 1.21506 0.94369 0.99558 0.98444 0.88665 0.92742 0.93743 0.90933 0.89275 0.90505 0.90432 0.92396 0.93592 0.91653 0.84854 0.83945 0.71484 0.91011 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.58 16 2 O -0.40 -8.89 9.00 -148.98 -1.34 -10.23 16 3 C 0.10 2.23 2.92 30.59 0.09 2.32 16 4 H 0.08 1.52 7.79 -2.39 -0.02 1.50 16 5 C -0.14 -2.68 5.63 30.59 0.17 -2.51 16 6 C -0.10 -2.24 5.78 30.60 0.18 -2.06 16 7 C -0.10 -3.29 5.19 30.59 0.16 -3.13 16 8 C -0.09 -3.29 1.78 -11.54 -0.02 -3.31 16 9 H 0.11 3.37 5.41 -2.39 -0.01 3.35 16 10 C 0.47 22.51 5.09 87.66 0.45 22.96 16 11 O -0.58 -33.45 12.21 -3.07 -0.04 -33.49 16 12 N -0.47 -22.87 1.54 -639.61 -0.99 -23.85 16 13 C -0.34 -20.19 9.51 84.04 0.80 -19.39 16 14 H 0.05 3.47 8.06 -2.91 -0.02 3.44 16 15 C 0.04 2.62 4.98 84.92 0.42 3.04 16 16 N -0.92 -59.22 13.96 21.66 0.30 -58.92 16 17 Si 0.96 50.48 24.89 68.60 1.71 52.19 16 18 H -0.28 -15.90 6.55 99.48 0.65 -15.24 16 19 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 20 H -0.25 -11.74 7.11 99.48 0.71 -11.03 16 21 C 0.10 3.58 5.83 85.63 0.50 4.08 16 22 C 0.47 15.87 7.21 71.23 0.51 16.39 16 23 O -0.54 -23.37 15.74 21.97 0.35 -23.02 16 24 O -0.50 -11.68 13.42 -51.45 -0.69 -12.37 16 25 C -0.10 -3.26 4.50 30.59 0.14 -3.12 16 26 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 0.62 7.87 -2.39 -0.02 0.60 16 28 H 0.04 0.59 8.08 -2.39 -0.02 0.57 16 29 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.09 1.29 7.87 -2.39 -0.02 1.27 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.63 7.68 -2.39 -0.02 1.61 16 33 H 0.06 1.98 5.24 -2.39 -0.01 1.97 16 34 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.27 16.60 8.31 -92.71 -0.77 15.83 16 36 H 0.13 4.30 8.07 -2.39 -0.02 4.28 16 37 H 0.14 3.95 5.71 -2.39 -0.01 3.94 16 38 H 0.42 6.15 9.10 -74.06 -0.67 5.48 16 39 H 0.07 2.52 7.86 -2.38 -0.02 2.50 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -83.75 318.52 4.25 -79.50 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.33 Total: 13.36 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 4.62 Total: 16.82 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -0.68 Total: -82.77 kcal Atomic # 8 Polarization: -77.39 SS G_CDS: -1.72 Total: -79.11 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 1.71 Total: 52.19 kcal Total: -83.75 4.25 -79.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610234884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.834 kcal (2) G-P(sol) polarization free energy of solvation -83.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds