Wall clock time and date at job start Tue Mar 31 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 113.99665 * 2 1 4 4 H 1.08998 * 109.47266 * 30.00666 * 3 2 1 5 5 C 1.53003 * 109.47448 * 270.00042 * 3 2 1 6 6 C 1.52998 * 109.46925 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47458 * 60.00447 * 6 5 3 8 8 C 1.53003 * 109.46688 * 299.99698 * 7 6 5 9 9 H 1.08998 * 109.47397 * 299.99683 * 8 7 6 10 10 C 1.50707 * 109.46800 * 180.02562 * 8 7 6 11 11 O 1.21297 * 119.99818 * 267.43486 * 10 8 7 12 12 N 1.34767 * 120.00181 * 87.43981 * 10 8 7 13 13 C 1.37100 * 120.00308 * 5.05045 * 12 10 8 14 14 H 1.08001 * 119.99548 * 344.65726 * 13 12 10 15 15 C 1.38947 * 119.99935 * 164.65081 * 13 12 10 16 16 N 1.31409 * 120.00269 * 329.79320 * 15 13 12 17 17 Si 1.86798 * 119.99859 * 149.79928 * 15 13 12 18 18 H 1.48502 * 109.47778 * 89.99563 * 17 15 13 19 19 H 1.48501 * 109.47375 * 209.99898 * 17 15 13 20 20 H 1.48509 * 109.47125 * 329.99426 * 17 15 13 21 21 C 1.46502 * 119.99939 * 185.05576 * 12 10 8 22 22 C 1.50701 * 109.47155 * 270.91301 * 21 12 10 23 23 O 1.20829 * 120.00235 * 359.97438 * 22 21 12 24 24 O 1.34229 * 120.00145 * 180.02562 * 22 21 12 25 25 C 1.52999 * 109.47376 * 60.00263 * 8 7 6 26 26 H 1.09000 * 109.47548 * 299.99452 * 1 2 3 27 27 H 1.09005 * 109.47399 * 59.99407 * 1 2 3 28 28 H 1.09002 * 109.47113 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46720 * 300.00220 * 5 3 2 30 30 H 1.08995 * 109.46734 * 60.00560 * 5 3 2 31 31 H 1.09008 * 109.46804 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.47395 * 299.99554 * 6 5 3 33 33 H 1.09000 * 109.47817 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47546 * 59.99200 * 7 6 5 35 35 H 0.97002 * 120.00138 * 180.02562 * 16 15 13 36 36 H 1.08999 * 109.47352 * 150.91794 * 21 12 10 37 37 H 1.08996 * 109.47304 * 30.91595 * 21 12 10 38 38 H 0.96702 * 117.00033 * 179.97438 * 24 22 21 39 39 H 1.08998 * 109.47331 * 59.99380 * 25 8 7 40 40 H 1.08996 * 109.47387 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2175 1.7715 -1.4425 6 6 2.8403 3.1690 -1.4424 7 6 4.1891 3.1262 -0.7214 8 6 3.9817 2.6602 0.7211 9 1 3.3168 3.3543 1.2351 10 6 5.3101 2.6187 1.4315 11 8 5.9542 1.5911 1.4535 12 7 5.7825 3.7233 2.0423 13 6 5.0101 4.8541 2.1072 14 1 4.1432 4.9532 1.4707 15 6 5.3426 5.8727 2.9919 16 7 5.9512 5.5893 4.1215 17 14 4.9243 7.6450 2.5754 18 1 3.5726 7.9705 3.0973 19 1 5.9255 8.5490 3.1963 20 1 4.9422 7.8246 1.1013 21 6 7.1214 3.7156 2.6370 22 6 7.0337 3.2453 4.0660 23 8 5.9626 2.9476 4.5395 24 8 8.1452 3.1582 4.8133 25 6 3.3589 1.2627 0.7211 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 2.8828 1.0776 -1.9563 30 1 1.2567 1.8016 -1.9562 31 1 2.9877 3.5011 -2.4701 32 1 2.1754 3.8631 -0.9284 33 1 4.6326 4.1219 -0.7209 34 1 4.8540 2.4321 -1.2353 35 1 6.1829 6.3003 4.7393 36 1 7.5363 4.7232 2.6109 37 1 7.7661 3.0425 2.0719 38 1 8.0389 2.8519 5.7244 39 1 4.0238 0.5686 0.2070 40 1 3.2107 0.9309 1.7487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610234886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:49 Heat of formation + Delta-G solvation = -176.379058 kcal Electronic energy + Delta-G solvation = -24067.427464 eV Core-core repulsion = 20461.248649 eV Total energy + Delta-G solvation = -3606.178815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.70633 -38.85259 -37.87163 -35.87134 -35.05027 -34.43140 -31.65504 -30.69217 -29.81095 -27.70675 -26.33152 -24.91666 -22.91699 -22.03172 -20.82513 -19.66970 -19.05028 -17.23922 -16.89174 -16.28146 -15.91417 -15.49575 -15.29355 -14.96496 -14.47105 -14.37010 -14.21170 -14.03389 -13.81802 -13.20331 -12.86154 -12.72698 -12.17515 -11.94333 -11.79170 -11.62342 -11.51694 -11.38987 -11.07198 -11.00918 -10.78757 -10.53377 -10.50507 -10.31113 -10.16119 -10.09025 -9.94975 -9.51122 -9.33480 -9.02870 -8.45645 -7.98726 -6.55787 -3.96165 3.04181 3.17259 3.20925 3.58147 3.74809 3.89561 4.02664 4.29267 4.64657 4.93125 5.01854 5.09847 5.27320 5.28821 5.38505 5.52049 5.59761 5.63713 5.72669 5.79785 5.88154 5.92492 6.08201 6.18222 6.27119 6.34888 6.43110 6.50023 6.51624 6.53187 6.66614 6.77941 6.87556 7.35308 7.40108 7.54422 7.70089 8.20096 8.96474 9.26454 9.37035 9.77196 10.51092 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.005878 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.923254 B = 4762.314650 C = 5660.179229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.090 3.910 4 H 0.059 0.941 5 C -0.138 4.138 6 C -0.113 4.113 7 C -0.108 4.108 8 C -0.085 4.085 9 H 0.094 0.906 10 C 0.476 3.524 11 O -0.600 6.600 12 N -0.427 5.427 13 C -0.345 4.345 14 H 0.107 0.893 15 C 0.041 3.959 16 N -0.850 5.850 17 Si 0.912 3.088 18 H -0.278 1.278 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.156 3.844 22 C 0.493 3.507 23 O -0.497 6.497 24 O -0.540 6.540 25 C -0.094 4.094 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.271 0.729 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.390 0.610 39 H 0.077 0.923 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 -1.672 -7.143 8.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.033 3.967 4 H 0.078 0.922 5 C -0.176 4.176 6 C -0.151 4.151 7 C -0.146 4.146 8 C -0.106 4.106 9 H 0.112 0.888 10 C 0.266 3.734 11 O -0.486 6.486 12 N -0.146 5.146 13 C -0.472 4.472 14 H 0.125 0.875 15 C -0.165 4.165 16 N -0.486 5.486 17 Si 0.738 3.262 18 H -0.204 1.204 19 H -0.207 1.207 20 H -0.191 1.191 21 C 0.030 3.970 22 C 0.333 3.667 23 O -0.381 6.381 24 O -0.351 6.351 25 C -0.132 4.132 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.126 0.874 37 H 0.104 0.896 38 H 0.246 0.754 39 H 0.095 0.905 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.679 -2.167 -7.225 8.876 hybrid contribution -0.609 1.167 0.843 1.563 sum -5.287 -1.000 -6.382 8.348 Atomic orbital electron populations 1.22737 0.81847 1.02224 0.99717 1.87918 1.19000 1.28491 1.95059 1.22213 0.95332 0.83772 0.95419 0.92250 1.22025 1.00780 0.97635 0.97138 1.21480 0.97098 0.96100 1.00430 1.21457 0.96918 1.02238 0.93945 1.20955 0.96089 0.97237 0.96331 0.88813 1.20063 0.87550 0.82506 0.83324 1.90538 1.60767 1.30822 1.66482 1.43452 1.12561 1.11468 1.47117 1.19539 1.12192 0.92887 1.22533 0.87528 1.25175 0.97541 1.00597 0.93237 1.70003 1.39665 1.33270 1.05660 0.86177 0.78363 0.82404 0.79230 1.20378 1.20724 1.19147 1.20331 0.86980 1.02545 0.87140 1.23588 0.80890 0.72941 0.89270 1.90560 1.29655 1.45318 1.72573 1.84512 1.40262 1.81836 1.28477 1.21352 0.93935 0.97002 1.00912 0.94166 0.94411 0.90070 0.91161 0.92439 0.91754 0.91800 0.90658 0.91793 0.91862 0.87387 0.89567 0.75409 0.90457 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.82 101.05 1.09 1.45 16 2 O -0.39 -5.94 10.35 -35.23 -0.36 -6.31 16 3 C 0.09 1.37 2.61 -26.73 -0.07 1.30 16 4 H 0.06 0.86 7.79 -51.93 -0.40 0.46 16 5 C -0.14 -1.83 5.54 -26.73 -0.15 -1.97 16 6 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 7 C -0.11 -1.75 5.16 -26.73 -0.14 -1.89 16 8 C -0.08 -1.65 1.73 -91.77 -0.16 -1.81 16 9 H 0.09 1.86 6.35 -51.93 -0.33 1.53 16 10 C 0.48 11.39 6.70 -10.99 -0.07 11.31 16 11 O -0.60 -15.79 15.78 5.54 0.09 -15.71 16 12 N -0.43 -10.50 2.11 -116.09 -0.25 -10.74 16 13 C -0.35 -8.40 8.94 -14.93 -0.13 -8.53 16 14 H 0.11 2.42 6.13 -52.49 -0.32 2.10 16 15 C 0.04 1.00 4.65 -17.47 -0.08 0.92 16 16 N -0.85 -21.88 9.17 55.50 0.51 -21.37 16 17 Si 0.91 18.65 29.65 -169.99 -5.04 13.61 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 C 0.16 3.68 5.21 -5.19 -0.03 3.66 16 22 C 0.49 12.10 6.37 36.01 0.23 12.33 16 23 O -0.50 -13.95 16.35 -18.75 -0.31 -14.26 16 24 O -0.54 -10.95 13.42 -39.25 -0.53 -11.47 16 25 C -0.09 -1.75 4.42 -26.73 -0.12 -1.86 16 26 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 31 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.11 2.48 6.89 -51.93 -0.36 2.12 16 37 H 0.09 1.91 7.53 -51.93 -0.39 1.52 16 38 H 0.39 6.23 9.10 45.56 0.41 6.65 16 39 H 0.08 1.52 7.86 -51.93 -0.41 1.11 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -31.79 326.97 -5.87 -37.66 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -5.13 Total: 10.41 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 0.22 Total: 13.24 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.26 Total: -32.11 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -1.11 Total: -47.75 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.04 Total: 13.61 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.79 -5.87 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610234886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.715 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds