Wall clock time and date at job start Tue Mar 31 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99953 * 2 1 4 4 H 1.08993 * 109.46877 * 330.00153 * 3 2 1 5 5 C 1.53004 * 109.47058 * 89.99625 * 3 2 1 6 6 C 1.53001 * 109.46978 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46905 * 300.00082 * 6 5 3 8 8 C 1.52987 * 109.47196 * 60.00014 * 7 6 5 9 9 H 1.08999 * 109.47608 * 59.99978 * 8 7 6 10 10 C 1.50706 * 109.47194 * 179.97438 * 8 7 6 11 11 O 1.21283 * 120.00045 * 103.04004 * 10 8 7 12 12 N 1.34778 * 119.99543 * 283.03931 * 10 8 7 13 13 C 1.37104 * 119.99547 * 185.09213 * 12 10 8 14 14 H 1.08001 * 119.99705 * 319.06381 * 13 12 10 15 15 C 1.38950 * 120.00132 * 139.06837 * 13 12 10 16 16 N 1.31402 * 119.99913 * 163.39650 * 15 13 12 17 17 Si 1.86801 * 119.99780 * 343.38880 * 15 13 12 18 18 H 1.48502 * 109.46855 * 95.83683 * 17 15 13 19 19 H 1.48495 * 109.47330 * 215.84218 * 17 15 13 20 20 H 1.48501 * 109.46977 * 335.84178 * 17 15 13 21 21 C 1.46491 * 120.00466 * 4.81765 * 12 10 8 22 22 C 1.50705 * 109.47419 * 94.20501 * 21 12 10 23 23 O 1.20827 * 119.99415 * 3.74673 * 22 21 12 24 24 O 1.34226 * 120.00045 * 183.74751 * 22 21 12 25 25 C 1.52992 * 109.47371 * 209.99659 * 3 2 1 26 26 H 1.08999 * 109.47385 * 60.00639 * 1 2 3 27 27 H 1.09003 * 109.46757 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47439 * 300.00136 * 1 2 3 29 29 H 1.09003 * 109.46964 * 300.00619 * 5 3 2 30 30 H 1.08999 * 109.47179 * 59.99917 * 5 3 2 31 31 H 1.08993 * 109.47113 * 60.00432 * 6 5 3 32 32 H 1.09003 * 109.46737 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.46860 * 299.99534 * 7 6 5 34 34 H 1.09001 * 109.46413 * 180.02562 * 7 6 5 35 35 H 0.97003 * 120.00005 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47458 * 214.20689 * 21 12 10 37 37 H 1.09008 * 109.47171 * 334.20681 * 21 12 10 38 38 H 0.96704 * 116.99523 * 180.02562 * 24 22 21 39 39 H 1.08998 * 109.47480 * 59.99615 * 25 3 2 40 40 H 1.09002 * 109.47379 * 300.00066 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2175 1.7715 1.4425 6 6 2.8392 3.1695 1.4425 7 6 4.1879 3.1278 0.7211 8 6 3.9805 2.6619 -0.7212 9 1 3.3150 3.3555 -1.2351 10 6 5.3088 2.6214 -1.4320 11 8 5.8638 1.5596 -1.6202 12 7 5.8799 3.7653 -1.8585 13 6 7.0350 3.7214 -2.5958 14 1 7.8180 3.0259 -2.3318 15 6 7.1983 4.5716 -3.6827 16 7 8.3953 4.7716 -4.1863 17 14 5.7159 5.4299 -4.4279 18 1 5.5932 6.7938 -3.8534 19 1 5.8878 5.5263 -5.8997 20 1 4.4883 4.6520 -4.1228 21 6 5.2633 5.0553 -1.5394 22 6 5.8866 5.6137 -0.2861 23 8 6.8025 5.0311 0.2444 24 8 5.4241 6.7584 0.2409 25 6 3.3588 1.2634 -0.7211 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.2567 1.8014 1.9563 30 1 2.8828 1.0776 1.9564 31 1 2.1737 3.8631 0.9289 32 1 2.9865 3.5016 2.4702 33 1 4.8535 2.4342 1.2349 34 1 4.6309 4.1237 0.7215 35 1 8.5094 5.3654 -4.9448 36 1 5.4235 5.7487 -2.3649 37 1 4.1933 4.9177 -1.3829 38 1 5.8560 7.0774 1.0451 39 1 3.2112 0.9314 -1.7488 40 1 4.0241 0.5695 -0.2073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610234887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:52 Heat of formation + Delta-G solvation = -164.662668 kcal Electronic energy + Delta-G solvation = -24282.213185 eV Core-core repulsion = 20676.542431 eV Total energy + Delta-G solvation = -3605.670754 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.36654 -39.33475 -38.22199 -36.11009 -35.70907 -34.81577 -32.21069 -30.80677 -29.99929 -28.07630 -26.50068 -25.44729 -22.76633 -22.31086 -21.73329 -20.16816 -18.70823 -17.76551 -17.33927 -16.78261 -16.45252 -16.08134 -15.80518 -15.24444 -15.09729 -14.89848 -14.27340 -14.23879 -13.66951 -13.43339 -13.10752 -12.84405 -12.68155 -12.62477 -12.33745 -11.96363 -11.87827 -11.74613 -11.21095 -11.13712 -11.03739 -10.98672 -10.63137 -10.52337 -10.38796 -10.36734 -10.10713 -9.97364 -9.52779 -9.14250 -8.59130 -7.91988 -6.41554 -4.07020 2.65911 2.92378 3.08448 3.12248 3.19398 3.60480 3.81841 4.04009 4.26808 4.71818 4.75935 4.93098 5.00167 5.07945 5.17234 5.23988 5.28183 5.31187 5.35871 5.44490 5.48572 5.53986 5.55474 5.64342 5.68643 5.86461 5.94438 6.01611 6.11015 6.19808 6.27450 6.46385 6.55892 6.86612 7.20841 7.45223 8.21657 8.32613 8.42396 8.87063 9.21137 9.60476 10.70459 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.006039 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.111179 B = 4635.337673 C = 5276.086737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.090 3.910 4 H 0.059 0.941 5 C -0.140 4.140 6 C -0.113 4.113 7 C -0.113 4.113 8 C -0.108 4.108 9 H 0.085 0.915 10 C 0.490 3.510 11 O -0.540 6.540 12 N -0.455 5.455 13 C -0.309 4.309 14 H 0.108 0.892 15 C 0.058 3.942 16 N -0.862 5.862 17 Si 0.864 3.136 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.259 1.259 21 C 0.098 3.902 22 C 0.455 3.545 23 O -0.484 6.484 24 O -0.528 6.528 25 C -0.093 4.093 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.275 0.725 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.401 0.599 39 H 0.074 0.926 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.434 1.729 9.187 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.032 3.968 4 H 0.077 0.923 5 C -0.177 4.177 6 C -0.151 4.151 7 C -0.151 4.151 8 C -0.130 4.130 9 H 0.103 0.897 10 C 0.278 3.722 11 O -0.419 6.419 12 N -0.177 5.177 13 C -0.436 4.436 14 H 0.126 0.874 15 C -0.148 4.148 16 N -0.499 5.499 17 Si 0.691 3.309 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.183 1.183 21 C -0.028 4.028 22 C 0.294 3.706 23 O -0.368 6.368 24 O -0.340 6.340 25 C -0.131 4.131 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.259 0.741 39 H 0.092 0.908 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.799 0.756 8.713 18.058 hybrid contribution -0.515 1.286 0.037 1.386 sum -16.314 2.042 8.750 18.625 Atomic orbital electron populations 1.22754 0.81654 1.02437 0.99705 1.87938 1.19125 1.28111 1.95037 1.22193 0.95126 0.84048 0.95403 0.92273 1.22038 1.01062 0.97392 0.97250 1.21491 0.96476 0.96438 1.00698 1.21616 0.97503 1.01873 0.94112 1.21339 0.96471 0.98357 0.96790 0.89722 1.20138 0.86234 0.84141 0.81673 1.90581 1.64547 1.29156 1.57580 1.43371 1.24836 1.01021 1.48509 1.19051 0.93323 1.23649 1.07585 0.87436 1.25400 0.96337 0.96976 0.96050 1.69696 1.20907 1.35150 1.24102 0.87121 0.84424 0.79454 0.79903 1.19838 1.20639 1.18345 1.21584 0.98294 0.90156 0.92766 1.24491 0.81908 0.77918 0.86288 1.90742 1.26986 1.58941 1.60147 1.84579 1.62921 1.41213 1.45314 1.21318 0.94159 0.96057 1.01551 0.94168 0.89898 0.94330 0.92099 0.90873 0.91803 0.91416 0.90802 0.91936 0.91471 0.87953 0.87510 0.74141 0.90776 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.39 16 2 O -0.38 -5.16 10.35 -35.23 -0.36 -5.52 16 3 C 0.09 1.16 2.61 -26.73 -0.07 1.09 16 4 H 0.06 0.68 7.79 -51.93 -0.40 0.27 16 5 C -0.14 -1.60 5.54 -26.73 -0.15 -1.74 16 6 C -0.11 -1.28 5.92 -26.73 -0.16 -1.44 16 7 C -0.11 -1.70 5.01 -26.74 -0.13 -1.84 16 8 C -0.11 -1.83 1.69 -91.75 -0.15 -1.98 16 9 H 0.08 1.24 6.65 -51.93 -0.35 0.90 16 10 C 0.49 11.30 6.83 -10.98 -0.08 11.22 16 11 O -0.54 -14.57 15.90 5.55 0.09 -14.48 16 12 N -0.45 -10.94 1.68 -116.09 -0.20 -11.14 16 13 C -0.31 -8.80 9.22 -14.93 -0.14 -8.94 16 14 H 0.11 3.51 7.93 -52.49 -0.42 3.10 16 15 C 0.06 1.60 5.39 -17.47 -0.09 1.50 16 16 N -0.86 -25.04 13.96 55.50 0.77 -24.27 16 17 Si 0.86 19.47 24.78 -169.99 -4.21 15.26 16 18 H -0.27 -5.65 6.79 56.52 0.38 -5.27 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.26 -5.52 7.07 56.52 0.40 -5.12 16 21 C 0.10 1.93 4.41 -5.20 -0.02 1.91 16 22 C 0.45 8.58 6.04 36.01 0.22 8.80 16 23 O -0.48 -10.90 16.76 -18.75 -0.31 -11.22 16 24 O -0.53 -7.45 13.42 -39.25 -0.53 -7.98 16 25 C -0.09 -1.50 4.29 -26.71 -0.11 -1.61 16 26 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 29 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.98 4.36 -51.93 -0.23 0.75 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.10 2.10 3.08 -51.93 -0.16 1.94 16 37 H 0.11 1.66 5.71 -51.92 -0.30 1.36 16 38 H 0.40 3.84 9.10 45.56 0.41 4.25 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.49 7.93 -51.93 -0.41 1.07 16 LS Contribution 319.13 15.07 4.81 4.81 Total: -1.00 -34.54 319.13 -4.51 -39.05 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -4.77 Total: 7.13 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 0.20 Total: 8.36 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.58 Total: -35.41 kcal Atomic # 8 Polarization: -38.09 SS G_CDS: -1.12 Total: -39.20 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.21 Total: 15.26 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.54 -4.51 -39.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610234887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.611 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds