Wall clock time and date at job start Tue Mar 31 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99953 * 2 1 4 4 H 1.08993 * 109.46877 * 330.00153 * 3 2 1 5 5 C 1.53004 * 109.47058 * 89.99625 * 3 2 1 6 6 C 1.53001 * 109.46978 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46905 * 300.00082 * 6 5 3 8 8 C 1.52987 * 109.47196 * 60.00014 * 7 6 5 9 9 H 1.08999 * 109.47608 * 59.99978 * 8 7 6 10 10 C 1.50706 * 109.47194 * 179.97438 * 8 7 6 11 11 O 1.21283 * 120.00045 * 103.04004 * 10 8 7 12 12 N 1.34778 * 119.99543 * 283.03931 * 10 8 7 13 13 C 1.37104 * 119.99547 * 185.09213 * 12 10 8 14 14 H 1.08001 * 119.99705 * 319.06381 * 13 12 10 15 15 C 1.38950 * 120.00132 * 139.06837 * 13 12 10 16 16 N 1.31402 * 119.99913 * 163.39650 * 15 13 12 17 17 Si 1.86801 * 119.99780 * 343.38880 * 15 13 12 18 18 H 1.48502 * 109.46855 * 95.83683 * 17 15 13 19 19 H 1.48495 * 109.47330 * 215.84218 * 17 15 13 20 20 H 1.48501 * 109.46977 * 335.84178 * 17 15 13 21 21 C 1.46491 * 120.00466 * 4.81765 * 12 10 8 22 22 C 1.50705 * 109.47419 * 94.20501 * 21 12 10 23 23 O 1.20827 * 119.99415 * 3.74673 * 22 21 12 24 24 O 1.34226 * 120.00045 * 183.74751 * 22 21 12 25 25 C 1.52992 * 109.47371 * 209.99659 * 3 2 1 26 26 H 1.08999 * 109.47385 * 60.00639 * 1 2 3 27 27 H 1.09003 * 109.46757 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47439 * 300.00136 * 1 2 3 29 29 H 1.09003 * 109.46964 * 300.00619 * 5 3 2 30 30 H 1.08999 * 109.47179 * 59.99917 * 5 3 2 31 31 H 1.08993 * 109.47113 * 60.00432 * 6 5 3 32 32 H 1.09003 * 109.46737 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.46860 * 299.99534 * 7 6 5 34 34 H 1.09001 * 109.46413 * 180.02562 * 7 6 5 35 35 H 0.97003 * 120.00005 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47458 * 214.20689 * 21 12 10 37 37 H 1.09008 * 109.47171 * 334.20681 * 21 12 10 38 38 H 0.96704 * 116.99523 * 180.02562 * 24 22 21 39 39 H 1.08998 * 109.47480 * 59.99615 * 25 3 2 40 40 H 1.09002 * 109.47379 * 300.00066 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2175 1.7715 1.4425 6 6 2.8392 3.1695 1.4425 7 6 4.1879 3.1278 0.7211 8 6 3.9805 2.6619 -0.7212 9 1 3.3150 3.3555 -1.2351 10 6 5.3088 2.6214 -1.4320 11 8 5.8638 1.5596 -1.6202 12 7 5.8799 3.7653 -1.8585 13 6 7.0350 3.7214 -2.5958 14 1 7.8180 3.0259 -2.3318 15 6 7.1983 4.5716 -3.6827 16 7 8.3953 4.7716 -4.1863 17 14 5.7159 5.4299 -4.4279 18 1 5.5932 6.7938 -3.8534 19 1 5.8878 5.5263 -5.8997 20 1 4.4883 4.6520 -4.1228 21 6 5.2633 5.0553 -1.5394 22 6 5.8866 5.6137 -0.2861 23 8 6.8025 5.0311 0.2444 24 8 5.4241 6.7584 0.2409 25 6 3.3588 1.2634 -0.7211 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.2567 1.8014 1.9563 30 1 2.8828 1.0776 1.9564 31 1 2.1737 3.8631 0.9289 32 1 2.9865 3.5016 2.4702 33 1 4.8535 2.4342 1.2349 34 1 4.6309 4.1237 0.7215 35 1 8.5094 5.3654 -4.9448 36 1 5.4235 5.7487 -2.3649 37 1 4.1933 4.9177 -1.3829 38 1 5.8560 7.0774 1.0451 39 1 3.2112 0.9314 -1.7488 40 1 4.0241 0.5695 -0.2073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610234887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:51 Heat of formation + Delta-G solvation = -191.926745 kcal Electronic energy + Delta-G solvation = -24283.395444 eV Core-core repulsion = 20676.542431 eV Total energy + Delta-G solvation = -3606.853013 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.90311 -40.68655 -39.54849 -37.34690 -37.09468 -36.60985 -34.24219 -32.02071 -31.10208 -29.73411 -27.32272 -27.26679 -24.19494 -23.39005 -23.18185 -21.32427 -20.30924 -19.24082 -19.17139 -18.35371 -17.80345 -17.53822 -16.98949 -16.74653 -16.35923 -15.95967 -15.79629 -15.40260 -15.23838 -14.78760 -14.49981 -14.39350 -14.19709 -14.03259 -13.69235 -13.40093 -13.14412 -12.83798 -12.65914 -12.51378 -12.43717 -12.27514 -12.01627 -11.89893 -11.68737 -11.62766 -11.48058 -11.43902 -11.08804 -10.57812 -10.27119 -9.90647 -8.51465 -6.25349 1.13978 1.18160 1.31541 1.44590 1.59944 2.08583 2.16256 2.51072 2.83781 2.98613 3.49615 3.67993 3.78443 3.89016 4.00426 4.07273 4.13368 4.19825 4.33177 4.38955 4.41531 4.52584 4.57286 4.61384 4.64992 4.88372 4.94663 5.02766 5.11808 5.17264 5.18335 5.29004 5.41768 5.48349 5.63581 6.01348 6.36279 6.42866 6.84302 7.01974 7.16115 7.70017 8.66197 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.006039 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.111179 B = 4635.337673 C = 5276.086737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.096 3.904 4 H 0.088 0.912 5 C -0.137 4.137 6 C -0.103 4.103 7 C -0.110 4.110 8 C -0.095 4.095 9 H 0.125 0.875 10 C 0.477 3.523 11 O -0.600 6.600 12 N -0.464 5.464 13 C -0.330 4.330 14 H 0.032 0.968 15 C 0.003 3.997 16 N -0.917 5.917 17 Si 0.938 3.062 18 H -0.230 1.230 19 H -0.282 1.282 20 H -0.232 1.232 21 C 0.089 3.911 22 C 0.466 3.534 23 O -0.534 6.534 24 O -0.502 6.502 25 C -0.092 4.092 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.281 0.719 36 H 0.104 0.896 37 H 0.160 0.840 38 H 0.426 0.574 39 H 0.057 0.943 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.566 4.760 10.043 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.039 3.961 4 H 0.106 0.894 5 C -0.174 4.174 6 C -0.140 4.140 7 C -0.148 4.148 8 C -0.116 4.116 9 H 0.143 0.857 10 C 0.268 3.732 11 O -0.482 6.482 12 N -0.186 5.186 13 C -0.458 4.458 14 H 0.050 0.950 15 C -0.198 4.198 16 N -0.554 5.554 17 Si 0.758 3.242 18 H -0.155 1.155 19 H -0.208 1.208 20 H -0.155 1.155 21 C -0.036 4.036 22 C 0.308 3.692 23 O -0.422 6.422 24 O -0.316 6.316 25 C -0.130 4.130 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.178 0.822 38 H 0.287 0.713 39 H 0.076 0.924 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.963 3.839 9.619 23.382 hybrid contribution 1.192 0.283 -0.161 1.235 sum -19.771 4.122 9.458 22.301 Atomic orbital electron populations 1.22989 0.79423 1.03650 1.01136 1.87904 1.21602 1.28583 1.95248 1.22124 0.93211 0.84675 0.96112 0.89370 1.22025 1.02141 0.97055 0.96225 1.21485 0.94032 0.96961 1.01539 1.21609 0.99784 1.00610 0.92766 1.21350 0.92825 0.99884 0.97588 0.85693 1.21390 0.88006 0.83073 0.80744 1.90540 1.66587 1.31392 1.59719 1.43369 1.23637 1.03328 1.48307 1.18528 0.93797 1.23420 1.10051 0.94973 1.26359 1.00241 0.97632 0.95552 1.69853 1.24019 1.36655 1.24858 0.85972 0.79786 0.80039 0.78362 1.15519 1.20849 1.15515 1.21800 1.00741 0.87765 0.93262 1.24128 0.80788 0.78501 0.85833 1.90759 1.29167 1.60693 1.61620 1.84478 1.62117 1.38546 1.46424 1.21268 0.96036 0.94866 1.00835 0.93050 0.89036 0.92428 0.89128 0.92867 0.88581 0.89571 0.93868 0.92140 0.90913 0.87902 0.82229 0.71252 0.92385 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.82 113.37 1.23 1.60 16 2 O -0.41 -10.30 10.35 -148.98 -1.54 -11.84 16 3 C 0.10 2.19 2.61 30.59 0.08 2.27 16 4 H 0.09 1.52 7.79 -2.39 -0.02 1.50 16 5 C -0.14 -2.63 5.54 30.60 0.17 -2.46 16 6 C -0.10 -1.82 5.92 30.60 0.18 -1.64 16 7 C -0.11 -3.08 5.01 30.59 0.15 -2.93 16 8 C -0.10 -3.08 1.69 -11.53 -0.02 -3.10 16 9 H 0.13 3.02 6.65 -2.39 -0.02 3.01 16 10 C 0.48 22.73 6.83 87.66 0.60 23.33 16 11 O -0.60 -35.08 15.90 -3.04 -0.05 -35.13 16 12 N -0.46 -22.69 1.68 -639.60 -1.08 -23.76 16 13 C -0.33 -20.01 9.22 84.04 0.77 -19.23 16 14 H 0.03 2.36 7.93 -2.91 -0.02 2.34 16 15 C 0.00 0.20 5.39 84.93 0.46 0.65 16 16 N -0.92 -55.79 13.96 21.66 0.30 -55.49 16 17 Si 0.94 38.84 24.78 68.60 1.70 40.54 16 18 H -0.23 -8.09 6.79 99.48 0.68 -7.41 16 19 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.23 -8.58 7.07 99.48 0.70 -7.88 16 21 C 0.09 3.23 4.41 85.64 0.38 3.61 16 22 C 0.47 16.50 6.04 71.24 0.43 16.93 16 23 O -0.53 -24.27 16.76 21.96 0.37 -23.91 16 24 O -0.50 -11.83 13.42 -51.38 -0.69 -12.52 16 25 C -0.09 -2.95 4.29 30.61 0.13 -2.82 16 26 H 0.05 0.68 8.09 -2.39 -0.02 0.66 16 27 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 0.67 7.87 -2.39 -0.02 0.66 16 29 H 0.09 1.27 7.87 -2.39 -0.02 1.25 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.72 4.36 -2.39 -0.01 1.71 16 35 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 36 H 0.10 3.77 3.08 -2.39 -0.01 3.76 16 37 H 0.16 4.01 5.71 -2.38 -0.01 4.00 16 38 H 0.43 6.26 9.10 -74.05 -0.67 5.59 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 Total: -1.00 -86.84 319.13 3.94 -82.91 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.36 Total: 22.99 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 4.56 Total: 16.21 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -0.77 Total: -79.25 kcal Atomic # 8 Polarization: -81.49 SS G_CDS: -1.91 Total: -83.40 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.70 Total: 40.54 kcal Total: -86.84 3.94 -82.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610234887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.021 kcal (2) G-P(sol) polarization free energy of solvation -86.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds