Wall clock time and date at job start Tue Mar 31 2020 05:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00471 * 2 1 4 4 C 1.50699 * 109.47335 * 179.97438 * 3 2 1 5 5 C 1.38118 * 120.40288 * 0.02562 * 4 3 2 6 6 C 1.39621 * 118.33593 * 180.02562 * 5 4 3 7 7 N 1.38645 * 120.53408 * 179.97438 * 6 5 4 8 8 C 1.39801 * 119.99978 * 7.85630 * 7 6 5 9 9 C 1.39325 * 119.94852 * 218.87035 * 8 7 6 10 10 C 1.38479 * 120.42680 * 179.70214 * 9 8 7 11 11 C 1.37688 * 120.32015 * 0.24848 * 10 9 8 12 12 C 1.40743 * 119.89434 * 0.02578 * 11 10 9 13 13 C 1.41414 * 120.20824 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99770 * 215.51742 * 13 12 11 15 15 C 1.39925 * 120.00027 * 35.51566 * 13 12 11 16 16 N 1.30825 * 120.00014 * 7.40129 * 15 13 12 17 17 Si 1.86804 * 119.99882 * 187.40247 * 15 13 12 18 18 H 1.48497 * 109.47065 * 94.99041 * 17 15 13 19 19 H 1.48503 * 109.46841 * 214.98870 * 17 15 13 20 20 H 1.48495 * 109.46949 * 334.98644 * 17 15 13 21 21 C 1.38276 * 119.95211 * 39.12209 * 8 7 6 22 22 N 1.33005 * 118.93540 * 0.25487 * 6 5 4 23 23 C 1.31742 * 120.68308 * 359.48399 * 22 6 5 24 24 N 1.31794 * 121.83652 * 0.52735 * 23 22 6 25 25 H 1.08994 * 109.47063 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46643 * 300.00364 * 1 2 3 27 27 H 1.09001 * 109.46705 * 60.00193 * 1 2 3 28 28 H 1.08998 * 109.47073 * 59.99596 * 3 2 1 29 29 H 1.09000 * 109.46882 * 300.00101 * 3 2 1 30 30 H 1.08001 * 120.83433 * 0.03867 * 5 4 3 31 31 H 0.97005 * 119.99849 * 187.84850 * 7 6 5 32 32 H 1.08006 * 119.78815 * 359.97305 * 9 8 7 33 33 H 1.07998 * 119.83963 * 180.27818 * 10 9 8 34 34 H 1.08009 * 120.05193 * 180.02562 * 11 10 9 35 35 H 0.97004 * 119.99800 * 179.97438 * 16 15 13 36 36 H 1.07997 * 120.16555 * 0.02562 * 21 8 7 37 37 H 1.08005 * 119.07983 * 180.25090 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.1153 -0.0564 0.0006 6 6 5.5102 -0.1165 0.0017 7 7 6.1626 -1.3398 0.0023 8 6 5.4334 -2.5210 -0.1639 9 6 5.7723 -3.6565 0.5688 10 6 5.0529 -4.8299 0.4166 11 6 3.9969 -4.8884 -0.4651 12 6 3.6465 -3.7510 -1.2163 13 6 2.5635 -3.8039 -2.1242 14 1 2.6089 -3.2520 -3.0515 15 6 1.4333 -4.5711 -1.8212 16 7 1.3138 -5.1217 -0.6404 17 14 0.0951 -4.8093 -3.1026 18 1 0.3276 -6.0828 -3.8302 19 1 -1.2292 -4.8568 -2.4323 20 1 0.1232 -3.6778 -4.0637 21 6 4.3801 -2.5620 -1.0588 22 7 6.2032 1.0188 0.0080 23 6 5.5864 2.1829 0.0029 24 7 4.2716 2.2730 0.0017 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6887 1.8463 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.5224 -0.9592 -0.0006 31 1 7.1251 -1.3762 0.1178 32 1 6.5988 -3.6202 1.2632 33 1 5.3210 -5.7032 0.9926 34 1 3.4385 -5.8058 -0.5801 35 1 0.5301 -5.6533 -0.4302 36 1 4.1193 -1.6837 -1.6306 37 1 6.1747 3.0887 0.0041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651072686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:12 Heat of formation + Delta-G solvation = 32.293658 kcal Electronic energy + Delta-G solvation = -22030.250522 eV Core-core repulsion = 18772.722107 eV Total energy + Delta-G solvation = -3257.528416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.70611 -38.21544 -37.59654 -35.56279 -33.57353 -32.90911 -30.87097 -29.89303 -28.04354 -27.74343 -25.72440 -25.27642 -23.57039 -22.27856 -20.84258 -20.47831 -18.02059 -17.59033 -16.61179 -15.89581 -15.83273 -15.58483 -15.09438 -14.83449 -14.58616 -14.35077 -14.29557 -14.01746 -13.40489 -12.97851 -12.61079 -12.32709 -12.17215 -11.96843 -11.45804 -11.21585 -11.16328 -10.99619 -10.66350 -10.50656 -10.35593 -9.93140 -9.82322 -9.57875 -9.30986 -9.20505 -8.92290 -8.35333 -7.47926 -6.83082 -6.71224 -4.44956 1.43263 1.58556 2.70967 2.84485 3.06453 3.09502 3.14383 3.46170 3.63463 3.94064 4.22421 4.61155 4.69205 4.76746 5.17388 5.27756 5.44018 5.50623 5.53178 5.61436 5.70230 5.97212 5.99495 6.14429 6.22001 6.29046 6.49808 6.81329 6.87443 6.94923 7.04340 7.19126 7.29124 7.38937 7.55926 7.75878 7.85253 8.00999 8.02629 8.26626 8.54178 8.62503 8.84384 8.87206 10.24447 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.006699 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.598493 B = 4178.920433 C = 5694.850665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.371 6.371 3 C 0.115 3.885 4 C 0.181 3.819 5 C -0.248 4.248 6 C 0.433 3.567 7 N -0.644 5.644 8 C 0.156 3.844 9 C -0.246 4.246 10 C -0.092 4.092 11 C -0.154 4.154 12 C 0.131 3.869 13 C -0.463 4.463 14 H 0.076 0.924 15 C 0.077 3.923 16 N -0.805 5.805 17 Si 0.908 3.092 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.263 1.263 21 C -0.229 4.229 22 N -0.587 5.587 23 C 0.327 3.673 24 N -0.567 5.567 25 H 0.093 0.907 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.177 0.823 31 H 0.407 0.593 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.279 0.721 36 H 0.103 0.897 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 7.713 1.446 7.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.289 6.289 3 C 0.037 3.963 4 C 0.041 3.959 5 C -0.275 4.275 6 C 0.190 3.810 7 N -0.268 5.268 8 C 0.064 3.936 9 C -0.268 4.268 10 C -0.111 4.111 11 C -0.174 4.174 12 C 0.128 3.872 13 C -0.493 4.493 14 H 0.095 0.905 15 C -0.139 4.139 16 N -0.431 5.431 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.251 4.251 22 N -0.312 5.312 23 C 0.036 3.964 24 N -0.288 5.288 25 H 0.111 0.889 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.194 0.806 31 H 0.243 0.757 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.359 8.075 1.573 8.235 hybrid contribution -0.848 -0.610 -0.387 1.114 sum -0.489 7.465 1.186 7.575 Atomic orbital electron populations 1.22751 0.80392 1.03502 0.99376 1.88030 1.19930 1.25581 1.95364 1.20886 0.87916 0.85944 1.01547 1.20861 0.95357 0.88479 0.91224 1.22692 0.94388 1.02033 1.08348 1.18594 0.89017 0.86040 0.87379 1.41940 1.09528 1.01297 1.74012 1.17416 0.94978 0.83921 0.97330 1.20145 1.06014 0.94271 1.06370 1.20527 0.96225 0.95783 0.98551 1.21350 0.96916 0.99050 1.00110 1.17416 0.90211 0.89066 0.90549 1.19470 0.99664 1.25539 1.04647 0.90546 1.25790 0.99338 0.93319 0.95435 1.69775 1.28238 1.25574 1.19502 0.86301 0.79644 0.79636 0.81139 1.19515 1.20270 1.18655 1.21066 1.02116 0.98577 1.03334 1.67856 1.41581 0.98156 1.23580 1.24379 0.87564 0.94190 0.90234 1.67895 1.07250 1.32710 1.20963 0.88880 0.94337 0.94117 0.91083 0.90934 0.80590 0.75716 0.88902 0.88678 0.86570 0.91035 0.87935 0.79167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 11.01 101.05 1.11 1.61 16 2 O -0.37 -6.51 9.25 -35.23 -0.33 -6.83 16 3 C 0.11 1.74 6.50 36.01 0.23 1.98 16 4 C 0.18 3.22 6.82 -82.33 -0.56 2.66 16 5 C -0.25 -4.95 7.34 -39.11 -0.29 -5.24 16 6 C 0.43 8.36 7.47 -154.67 -1.16 7.21 16 7 N -0.64 -12.23 5.47 -9.88 -0.05 -12.29 16 8 C 0.16 3.38 5.97 -83.81 -0.50 2.88 16 9 C -0.25 -5.21 9.97 -39.09 -0.39 -5.60 16 10 C -0.09 -2.02 10.02 -39.69 -0.40 -2.42 16 11 C -0.15 -3.80 8.62 -38.84 -0.33 -4.14 16 12 C 0.13 3.33 5.47 -106.85 -0.58 2.74 16 13 C -0.46 -11.85 9.03 -37.74 -0.34 -12.20 16 14 H 0.08 1.92 7.86 -52.48 -0.41 1.51 16 15 C 0.08 1.88 5.28 -17.35 -0.09 1.79 16 16 N -0.80 -20.13 11.14 55.55 0.62 -19.52 16 17 Si 0.91 18.29 29.57 -169.99 -5.03 13.26 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 20 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 21 C -0.23 -5.43 7.09 -38.68 -0.27 -5.71 16 22 N -0.59 -10.32 10.47 -13.78 -0.14 -10.46 16 23 C 0.33 5.08 12.28 -92.20 -1.13 3.95 16 24 N -0.57 -9.46 10.37 -10.88 -0.11 -9.57 16 25 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.18 3.97 4.39 -52.49 -0.23 3.74 16 31 H 0.41 6.75 8.95 -40.82 -0.37 6.38 16 32 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 33 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 34 H 0.12 2.95 6.63 -52.48 -0.35 2.61 16 35 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 36 H 0.10 2.46 6.39 -52.49 -0.34 2.12 16 37 H 0.19 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 317.87 15.07 4.79 4.79 Total: -1.00 -27.93 317.87 -9.17 -37.09 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -4.21 Total: 14.01 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -4.70 Total: -10.49 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.31 Total: -51.83 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.33 Total: -6.83 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.93 -9.17 -37.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651072686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.387 kcal (2) G-P(sol) polarization free energy of solvation -27.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds