Wall clock time and date at job start Tue Mar 31 2020 05:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00471 * 2 1 4 4 C 1.50699 * 109.47335 * 179.97438 * 3 2 1 5 5 C 1.38118 * 120.40288 * 0.02562 * 4 3 2 6 6 C 1.39621 * 118.33593 * 180.02562 * 5 4 3 7 7 N 1.38645 * 120.53408 * 179.97438 * 6 5 4 8 8 C 1.39801 * 119.99978 * 7.85630 * 7 6 5 9 9 C 1.39325 * 119.94852 * 218.87035 * 8 7 6 10 10 C 1.38479 * 120.42680 * 179.70214 * 9 8 7 11 11 C 1.37688 * 120.32015 * 0.24848 * 10 9 8 12 12 C 1.40743 * 119.89434 * 0.02578 * 11 10 9 13 13 C 1.41414 * 120.20824 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99770 * 215.51742 * 13 12 11 15 15 C 1.39925 * 120.00027 * 35.51566 * 13 12 11 16 16 N 1.30825 * 120.00014 * 7.40129 * 15 13 12 17 17 Si 1.86804 * 119.99882 * 187.40247 * 15 13 12 18 18 H 1.48497 * 109.47065 * 94.99041 * 17 15 13 19 19 H 1.48503 * 109.46841 * 214.98870 * 17 15 13 20 20 H 1.48495 * 109.46949 * 334.98644 * 17 15 13 21 21 C 1.38276 * 119.95211 * 39.12209 * 8 7 6 22 22 N 1.33005 * 118.93540 * 0.25487 * 6 5 4 23 23 C 1.31742 * 120.68308 * 359.48399 * 22 6 5 24 24 N 1.31794 * 121.83652 * 0.52735 * 23 22 6 25 25 H 1.08994 * 109.47063 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46643 * 300.00364 * 1 2 3 27 27 H 1.09001 * 109.46705 * 60.00193 * 1 2 3 28 28 H 1.08998 * 109.47073 * 59.99596 * 3 2 1 29 29 H 1.09000 * 109.46882 * 300.00101 * 3 2 1 30 30 H 1.08001 * 120.83433 * 0.03867 * 5 4 3 31 31 H 0.97005 * 119.99849 * 187.84850 * 7 6 5 32 32 H 1.08006 * 119.78815 * 359.97305 * 9 8 7 33 33 H 1.07998 * 119.83963 * 180.27818 * 10 9 8 34 34 H 1.08009 * 120.05193 * 180.02562 * 11 10 9 35 35 H 0.97004 * 119.99800 * 179.97438 * 16 15 13 36 36 H 1.07997 * 120.16555 * 0.02562 * 21 8 7 37 37 H 1.08005 * 119.07983 * 180.25090 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.1153 -0.0564 0.0006 6 6 5.5102 -0.1165 0.0017 7 7 6.1626 -1.3398 0.0023 8 6 5.4334 -2.5210 -0.1639 9 6 5.7723 -3.6565 0.5688 10 6 5.0529 -4.8299 0.4166 11 6 3.9969 -4.8884 -0.4651 12 6 3.6465 -3.7510 -1.2163 13 6 2.5635 -3.8039 -2.1242 14 1 2.6089 -3.2520 -3.0515 15 6 1.4333 -4.5711 -1.8212 16 7 1.3138 -5.1217 -0.6404 17 14 0.0951 -4.8093 -3.1026 18 1 0.3276 -6.0828 -3.8302 19 1 -1.2292 -4.8568 -2.4323 20 1 0.1232 -3.6778 -4.0637 21 6 4.3801 -2.5620 -1.0588 22 7 6.2032 1.0188 0.0080 23 6 5.5864 2.1829 0.0029 24 7 4.2716 2.2730 0.0017 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6887 1.8463 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.5224 -0.9592 -0.0006 31 1 7.1251 -1.3762 0.1178 32 1 6.5988 -3.6202 1.2632 33 1 5.3210 -5.7032 0.9926 34 1 3.4385 -5.8058 -0.5801 35 1 0.5301 -5.6533 -0.4302 36 1 4.1193 -1.6837 -1.6306 37 1 6.1747 3.0887 0.0041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651072686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:11 Heat of formation + Delta-G solvation = 17.066163 kcal Electronic energy + Delta-G solvation = -22030.910836 eV Core-core repulsion = 18772.722107 eV Total energy + Delta-G solvation = -3258.188730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.10571 -39.88955 -38.85167 -37.18148 -35.27287 -34.37422 -32.39180 -31.64432 -29.72285 -29.02856 -27.20353 -26.82618 -24.96617 -23.75561 -22.59821 -22.13595 -19.63695 -19.10445 -18.09568 -17.40972 -17.12532 -17.00464 -16.72836 -16.42735 -16.07491 -15.80875 -15.69264 -15.35908 -15.06396 -14.67024 -14.10272 -13.83525 -13.58087 -13.39906 -13.10940 -12.85960 -12.68779 -12.38000 -12.30686 -12.16125 -11.95116 -11.57510 -11.38007 -11.14706 -11.01504 -10.52652 -10.29818 -9.96472 -9.31128 -8.57058 -8.47259 -6.37396 0.05533 0.12632 0.95027 1.08319 1.39977 1.48891 1.53159 1.96538 2.25081 2.44960 2.75787 2.88345 3.38553 3.57099 3.67180 3.74710 4.09404 4.35511 4.37288 4.42583 4.47458 4.53760 4.58362 4.65161 4.78305 4.88601 5.00728 5.01915 5.06430 5.17008 5.34952 5.49995 5.76799 5.79519 6.00969 6.07233 6.18635 6.25123 6.34870 6.62907 6.73669 6.97166 6.99427 7.23191 8.44302 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.006699 C = 0.004916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.598493 B = 4178.920433 C = 5694.850665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.410 6.410 3 C 0.114 3.886 4 C 0.184 3.816 5 C -0.277 4.277 6 C 0.423 3.577 7 N -0.640 5.640 8 C 0.163 3.837 9 C -0.240 4.240 10 C -0.090 4.090 11 C -0.178 4.178 12 C 0.104 3.896 13 C -0.498 4.498 14 H 0.067 0.933 15 C 0.041 3.959 16 N -0.834 5.834 17 Si 0.975 3.025 18 H -0.263 1.263 19 H -0.266 1.266 20 H -0.263 1.263 21 C -0.236 4.236 22 N -0.588 5.588 23 C 0.330 3.670 24 N -0.564 5.564 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.146 0.854 31 H 0.419 0.581 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.285 0.715 36 H 0.090 0.910 37 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 9.324 1.897 9.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.329 6.329 3 C 0.037 3.963 4 C 0.043 3.957 5 C -0.304 4.304 6 C 0.180 3.820 7 N -0.266 5.266 8 C 0.069 3.931 9 C -0.262 4.262 10 C -0.109 4.109 11 C -0.198 4.198 12 C 0.101 3.899 13 C -0.528 4.528 14 H 0.085 0.915 15 C -0.172 4.172 16 N -0.461 5.461 17 Si 0.797 3.203 18 H -0.188 1.188 19 H -0.190 1.190 20 H -0.187 1.187 21 C -0.258 4.258 22 N -0.313 5.313 23 C 0.041 3.959 24 N -0.285 5.285 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.164 0.836 31 H 0.257 0.743 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 0.728 9.712 2.035 9.949 hybrid contribution -0.855 -0.959 -0.451 1.362 sum -0.127 8.753 1.585 8.896 Atomic orbital electron populations 1.22881 0.78743 1.03214 1.01564 1.87994 1.21972 1.27233 1.95715 1.21066 0.86292 0.85435 1.03493 1.21303 0.96897 0.87985 0.89536 1.22506 0.94695 1.01952 1.11278 1.18702 0.88979 0.86629 0.87672 1.41760 1.09905 1.00604 1.74288 1.17431 0.94278 0.85130 0.96223 1.20499 1.06261 0.93449 1.05951 1.20837 0.95092 0.97243 0.97689 1.21293 0.98335 0.98336 1.01835 1.17703 0.90873 0.89994 0.91348 1.19628 1.01041 1.27255 1.04897 0.91522 1.26530 1.00997 0.92483 0.97238 1.69832 1.29221 1.26146 1.20941 0.85291 0.77047 0.79500 0.78482 1.18795 1.19045 1.18721 1.20982 1.03083 0.97634 1.04063 1.67969 1.41398 0.98082 1.23826 1.25405 0.87689 0.94980 0.87807 1.68054 1.07720 1.31736 1.20986 0.90488 0.91761 0.92234 0.88623 0.89022 0.83648 0.74267 0.85651 0.85814 0.88174 0.90410 0.89232 0.74556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.41 -14.55 9.25 -148.98 -1.38 -15.93 16 3 C 0.11 3.33 6.50 71.24 0.46 3.79 16 4 C 0.18 6.38 6.82 42.42 0.29 6.67 16 5 C -0.28 -11.21 7.34 22.58 0.17 -11.05 16 6 C 0.42 16.11 7.47 133.12 1.00 17.10 16 7 N -0.64 -23.91 5.47 -185.16 -1.01 -24.92 16 8 C 0.16 7.09 5.97 38.14 0.23 7.31 16 9 C -0.24 -9.87 9.97 22.59 0.23 -9.65 16 10 C -0.09 -3.93 10.02 22.20 0.22 -3.71 16 11 C -0.18 -9.06 8.62 22.75 0.20 -8.86 16 12 C 0.10 5.53 5.47 -21.31 -0.12 5.41 16 13 C -0.50 -26.85 9.03 23.46 0.21 -26.64 16 14 H 0.07 3.57 7.86 -2.91 -0.02 3.54 16 15 C 0.04 2.06 5.28 85.25 0.45 2.50 16 16 N -0.83 -43.20 11.14 21.82 0.24 -42.96 16 17 Si 0.98 38.30 29.57 68.60 2.03 40.33 16 18 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 19 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 C -0.24 -11.64 7.09 22.86 0.16 -11.48 16 22 N -0.59 -19.52 10.47 -197.52 -2.07 -21.59 16 23 C 0.33 9.31 12.28 180.90 2.22 11.53 16 24 N -0.56 -17.50 10.37 -188.34 -1.95 -19.45 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.15 6.89 4.39 -2.91 -0.01 6.87 16 31 H 0.42 13.28 8.95 -92.70 -0.83 12.45 16 32 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 33 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 34 H 0.10 5.33 6.63 -2.91 -0.02 5.31 16 35 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 36 H 0.09 4.56 6.39 -2.91 -0.02 4.54 16 37 H 0.24 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -62.60 317.87 3.10 -59.50 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: 0.28 Total: 39.98 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 6.96 Total: -14.96 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -4.79 Total: -108.92 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -1.38 Total: -15.93 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -62.60 3.10 -59.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651072686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.566 kcal (2) G-P(sol) polarization free energy of solvation -62.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds