Wall clock time and date at job start Tue Mar 31 2020 05:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86803 * 120.00325 * 2 1 4 4 H 1.48508 * 109.46769 * 275.14021 * 3 2 1 5 5 H 1.48498 * 109.46940 * 35.13501 * 3 2 1 6 6 H 1.48495 * 109.47225 * 155.14034 * 3 2 1 7 7 C 1.39931 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99993 * 343.92114 * 7 2 1 9 9 C 1.41410 * 119.99938 * 163.92126 * 7 2 1 10 10 C 1.40773 * 120.20675 * 332.07242 * 9 7 2 11 11 C 1.37644 * 119.88255 * 180.25434 * 10 9 7 12 12 C 1.38529 * 120.32356 * 0.02620 * 11 10 9 13 13 C 1.39247 * 120.42687 * 359.97438 * 12 11 10 14 14 N 1.39943 * 119.94463 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99775 * 214.56128 * 14 13 12 16 16 O 1.21280 * 120.00042 * 5.25479 * 15 14 13 17 17 C 1.50701 * 119.99746 * 185.25566 * 15 14 13 18 18 C 1.55923 * 115.92272 * 297.93683 * 17 15 14 19 19 C 1.54577 * 104.64602 * 199.97050 * 18 17 15 20 20 C 1.55928 * 104.64543 * 359.97438 * 19 18 17 21 21 C 1.55928 * 105.22853 * 289.53536 * 20 19 18 22 22 C 1.55926 * 115.92247 * 62.06132 * 17 15 14 23 23 C 1.56952 * 116.22424 * 179.97438 * 17 15 14 24 24 C 1.38272 * 120.10851 * 359.97438 * 13 12 11 25 25 H 0.97006 * 119.99201 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.06266 * 0.27701 * 10 9 7 27 27 H 1.08004 * 119.83797 * 180.02562 * 11 10 9 28 28 H 1.08002 * 119.78677 * 180.02562 * 12 11 10 29 29 H 0.96999 * 119.99687 * 34.56366 * 14 13 12 30 30 H 1.08995 * 110.40264 * 318.76284 * 18 17 15 31 31 H 1.09003 * 110.40547 * 81.17478 * 18 17 15 32 32 H 1.09007 * 110.40114 * 241.20854 * 19 18 17 33 33 H 1.09000 * 110.50381 * 118.84098 * 19 18 17 34 34 H 1.09000 * 115.92470 * 160.03469 * 20 19 18 35 35 H 1.09003 * 110.39837 * 189.25649 * 21 20 19 36 36 H 1.08997 * 110.40344 * 311.55521 * 21 20 19 37 37 H 1.08999 * 110.40652 * 278.82490 * 22 17 15 38 38 H 1.09009 * 110.40328 * 41.24090 * 22 17 15 39 39 H 1.08992 * 112.02676 * 296.35324 * 23 17 15 40 40 H 1.08995 * 112.02557 * 62.80536 * 23 17 15 41 41 H 1.08000 * 120.16453 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3813 2.1091 -1.3945 5 1 1.4984 2.6189 0.8057 6 1 3.5900 1.4112 0.5886 7 6 2.0079 -1.2119 0.0005 8 1 1.4995 -2.1287 0.2600 9 6 3.3805 -1.2361 -0.3386 10 6 3.9132 -0.2630 -1.2053 11 6 5.2491 -0.2959 -1.5351 12 6 6.0729 -1.2827 -1.0187 13 6 5.5599 -2.2517 -0.1603 14 7 6.4013 -3.2437 0.3559 15 6 5.9271 -4.4879 0.5648 16 8 4.8008 -4.7738 0.2175 17 6 6.7964 -5.5237 1.2299 18 6 8.1058 -5.9027 0.4728 19 6 8.5113 -7.2754 1.0563 20 6 7.4092 -7.5964 2.1116 21 6 7.6572 -6.5947 3.2805 22 6 7.2449 -5.2026 2.6883 23 6 6.1554 -6.9424 1.4298 24 6 4.2207 -2.2348 0.1837 25 1 -0.4849 0.8402 -0.0004 26 1 3.2749 0.5083 -1.6104 27 1 5.6571 0.4512 -2.1998 28 1 7.1199 -1.3001 -1.2830 29 1 7.3257 -3.0357 0.5634 30 1 7.9155 -5.9859 -0.5972 31 1 8.8834 -5.1633 0.6648 32 1 9.4884 -7.2110 1.5354 33 1 8.5218 -8.0347 0.2743 34 1 7.3114 -8.6444 2.3948 35 1 7.0357 -6.8507 4.1386 36 1 8.7102 -6.5926 3.5622 37 1 8.0993 -4.5257 2.6828 38 1 6.4194 -4.7692 3.2531 39 1 5.2956 -6.9118 2.0988 40 1 5.9106 -7.4178 0.4800 41 1 3.8220 -2.9857 0.8497 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334738521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:17 Heat of formation + Delta-G solvation = -20.341122 kcal Electronic energy + Delta-G solvation = -22255.620998 eV Core-core repulsion = 19099.350511 eV Total energy + Delta-G solvation = -3156.270488 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.79270 -38.96107 -37.19852 -34.46703 -33.17448 -30.60208 -30.39752 -30.15927 -28.18828 -27.76314 -25.19987 -22.94776 -22.42381 -20.88893 -20.73617 -19.64740 -18.70707 -17.79910 -16.96101 -15.97836 -15.54263 -15.39672 -15.13566 -14.74528 -14.50306 -14.24611 -13.38773 -12.92077 -12.75894 -12.70631 -12.65448 -12.19478 -11.97224 -11.93775 -11.58331 -11.44186 -11.22344 -11.12977 -11.03843 -10.99721 -10.96498 -10.58283 -10.43664 -10.13994 -9.81391 -9.76352 -9.43112 -9.25776 -8.95925 -7.65347 -7.11556 -6.90528 -4.45213 2.38890 2.65148 3.09437 3.15919 3.25401 3.35113 3.53346 4.01364 4.17867 4.30492 4.37976 4.54332 4.90104 4.95922 4.99304 5.18797 5.22165 5.24485 5.27324 5.46983 5.54559 5.69412 5.74798 5.77049 5.84952 5.91201 6.00490 6.06609 6.09372 6.13524 6.14772 6.21671 6.42682 6.66294 6.79571 6.84369 7.20087 7.35253 7.54603 7.63902 7.92945 8.04475 8.11027 8.40134 8.65641 8.70813 8.85038 10.11861 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.029769 B = 0.004031 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.360857 B = 6944.761666 C = 7382.427419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.082 3.918 3 Si 0.917 3.083 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.243 1.243 7 C -0.440 4.440 8 H 0.091 0.909 9 C 0.103 3.897 10 C -0.251 4.251 11 C -0.063 4.063 12 C -0.266 4.266 13 C 0.165 3.835 14 N -0.667 5.667 15 C 0.535 3.465 16 O -0.510 6.510 17 C -0.102 4.102 18 C -0.108 4.108 19 C -0.117 4.117 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.108 4.108 23 C -0.096 4.096 24 C -0.199 4.199 25 H 0.285 0.715 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.399 0.601 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.701 -9.482 4.689 19.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.166 1.166 7 C -0.468 4.468 8 H 0.109 0.891 9 C 0.100 3.900 10 C -0.270 4.270 11 C -0.082 4.082 12 C -0.288 4.288 13 C 0.073 3.927 14 N -0.311 5.311 15 C 0.321 3.679 16 O -0.384 6.384 17 C -0.106 4.106 18 C -0.146 4.146 19 C -0.155 4.155 20 C -0.125 4.125 21 C -0.154 4.154 22 C -0.146 4.146 23 C -0.134 4.134 24 C -0.220 4.220 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.233 0.767 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 15.609 -9.637 4.490 18.885 hybrid contribution 0.699 0.968 -0.027 1.194 sum 16.307 -8.669 4.463 19.000 Atomic orbital electron populations 1.69695 1.08090 1.30193 1.35344 1.26198 0.94785 1.01802 0.90879 0.86249 0.81192 0.79486 0.78621 1.19791 1.22180 1.16595 1.19533 0.92280 0.95932 1.39080 0.89084 1.17596 0.92979 0.90308 0.89141 1.20980 0.95397 1.04319 1.06302 1.20351 0.93556 0.96560 0.97741 1.20040 0.98648 1.02048 1.08030 1.17505 0.90762 0.88978 0.95499 1.43465 1.14075 1.09459 1.64094 1.19775 0.87310 0.82055 0.78787 1.90767 1.19304 1.79449 1.48882 1.22940 0.95853 0.95349 0.96413 1.22565 0.94989 0.97373 0.99682 1.22583 0.98192 0.96487 0.98192 1.23578 0.95308 0.98371 0.95283 1.22967 1.00999 0.94067 0.97415 1.22941 1.00988 0.97355 0.93269 1.23370 0.96825 0.92226 1.00942 1.20952 0.91533 1.03555 1.05977 0.90473 0.88307 0.88523 0.88721 0.76711 0.91316 0.91218 0.91556 0.91605 0.88212 0.91490 0.91554 0.91220 0.91074 0.90574 0.90702 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.22 13.93 55.55 0.77 -21.44 16 2 C 0.08 2.22 5.44 -17.34 -0.09 2.13 16 3 Si 0.92 21.32 24.40 -169.99 -4.15 17.17 16 4 H -0.27 -6.10 6.71 56.52 0.38 -5.72 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.24 -5.73 6.67 56.52 0.38 -5.35 16 7 C -0.44 -12.53 9.59 -37.74 -0.36 -12.89 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 C 0.10 2.77 5.18 -106.85 -0.55 2.22 16 10 C -0.25 -6.23 7.06 -38.84 -0.27 -6.50 16 11 C -0.06 -1.39 10.02 -39.69 -0.40 -1.79 16 12 C -0.27 -5.54 9.97 -39.10 -0.39 -5.93 16 13 C 0.16 3.59 6.25 -83.77 -0.52 3.07 16 14 N -0.67 -11.50 5.34 -9.91 -0.05 -11.55 16 15 C 0.53 9.41 6.93 -10.98 -0.08 9.33 16 16 O -0.51 -11.45 14.28 5.56 0.08 -11.37 16 17 C -0.10 -1.28 1.27 -150.39 -0.19 -1.48 16 18 C -0.11 -1.08 5.88 -24.34 -0.14 -1.23 16 19 C -0.12 -0.97 6.23 -24.34 -0.15 -1.12 16 20 C -0.11 -0.94 5.14 -85.33 -0.44 -1.38 16 21 C -0.12 -1.00 6.33 -23.11 -0.15 -1.14 16 22 C -0.11 -1.13 5.98 -23.11 -0.14 -1.27 16 23 C -0.10 -1.15 5.64 -22.43 -0.13 -1.28 16 24 C -0.20 -5.03 8.39 -38.69 -0.32 -5.36 16 25 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 26 H 0.10 2.44 4.28 -52.49 -0.22 2.21 16 27 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 28 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 29 H 0.40 5.32 8.82 -40.82 -0.36 4.96 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 32 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 37 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 38 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.11 2.94 6.50 -52.49 -0.34 2.60 16 LS Contribution 324.27 15.07 4.89 4.89 Total: -1.00 -31.04 324.27 -8.76 -39.80 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.97 Total: 7.12 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -4.33 Total: -24.61 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.72 Total: -32.99 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.15 Total: 17.17 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.04 -8.76 -39.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334738521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.460 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds