Wall clock time and date at job start Tue Mar 31 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99832 * 2 1 4 4 H 1.48499 * 109.46682 * 269.99753 * 3 2 1 5 5 H 1.48496 * 109.46911 * 29.99393 * 3 2 1 6 6 H 1.48502 * 109.46984 * 149.99731 * 3 2 1 7 7 C 1.37876 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00231 * 182.00232 * 7 2 1 9 9 C 1.50701 * 119.99824 * 2.01056 * 7 2 1 10 10 H 1.09004 * 109.47294 * 175.36222 * 9 7 2 11 11 C 1.50699 * 109.47535 * 55.35720 * 9 7 2 12 12 O 1.21270 * 120.00237 * 240.00228 * 11 9 7 13 13 N 1.34779 * 119.99520 * 59.99930 * 11 9 7 14 14 C 1.45317 * 118.83157 * 0.02562 * 13 11 9 15 15 C 1.51706 * 112.00532 * 235.86506 * 14 13 11 16 16 C 1.51272 * 112.95587 * 318.24098 * 15 14 13 17 17 H 1.08999 * 114.33791 * 163.72601 * 16 15 14 18 18 C 1.52117 * 120.85146 * 308.62585 * 16 15 14 19 19 C 1.51967 * 120.67348 * 20.74887 * 16 15 14 20 20 H 1.08998 * 117.35119 * 142.22418 * 19 16 15 21 21 C 1.45538 * 118.82756 * 179.72897 * 13 11 9 22 22 C 1.50702 * 109.47023 * 295.35945 * 9 7 2 23 23 C 1.38241 * 119.99886 * 346.97978 * 22 9 7 24 24 C 1.38233 * 119.99920 * 180.34557 * 23 22 9 25 25 C 1.38236 * 120.00104 * 359.88651 * 24 23 22 26 26 C 1.38236 * 120.00040 * 0.09279 * 25 24 23 27 27 C 1.38229 * 120.00275 * 167.25983 * 22 9 7 28 28 H 0.96997 * 120.00490 * 0.02562 * 1 2 3 29 29 H 1.08996 * 108.97211 * 356.51824 * 14 13 11 30 30 H 1.09002 * 108.97445 * 115.30352 * 14 13 11 31 31 H 1.09007 * 108.78106 * 79.13438 * 15 14 13 32 32 H 1.08994 * 108.78780 * 197.45347 * 15 14 13 33 33 H 1.09002 * 117.53781 * 217.65378 * 18 16 15 34 34 H 1.08995 * 117.54037 * 2.84671 * 18 16 15 35 35 H 1.09001 * 109.21727 * 260.83979 * 21 13 11 36 36 H 1.09004 * 109.21008 * 20.16873 * 21 13 11 37 37 H 1.08001 * 119.99702 * 0.28231 * 23 22 9 38 38 H 1.08000 * 120.00029 * 180.02562 * 24 23 22 39 39 H 1.08003 * 119.99838 * 180.11056 * 25 24 23 40 40 H 1.07999 * 120.00286 * 179.97438 * 26 25 24 41 41 H 1.08003 * 120.00064 * 359.69772 * 27 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0841 -1.1942 0.0332 9 6 1.2518 -2.4987 -0.0447 10 1 1.9596 -3.3242 -0.1204 11 6 0.3371 -2.5098 -1.2423 12 8 -0.8600 -2.6297 -1.0899 13 7 0.8496 -2.3864 -2.4827 14 6 2.2877 -2.2448 -2.6359 15 6 2.6564 -0.9920 -3.4081 16 6 1.7553 -0.7458 -4.5979 17 1 1.8086 0.2660 -5.0000 18 6 1.4976 -1.8413 -5.6213 19 6 0.3776 -1.3828 -4.6720 20 1 -0.4277 -0.7859 -5.1002 21 6 -0.0565 -2.4064 -3.6215 22 6 0.4350 -2.6513 1.2126 23 6 0.6624 -1.8157 2.2902 24 6 -0.0819 -1.9602 3.4460 25 6 -1.0552 -2.9388 3.5235 26 6 -1.2829 -3.7740 2.4458 27 6 -0.5376 -3.6304 1.2905 28 1 -0.4851 0.8400 -0.0004 29 1 2.7466 -2.2003 -1.6482 30 1 2.6748 -3.1140 -3.1675 31 1 2.5940 -0.1351 -2.7372 32 1 3.6832 -1.0867 -3.7610 33 1 1.4237 -1.5460 -6.6679 34 1 1.9465 -2.8175 -5.4383 35 1 -0.0548 -3.4026 -4.0638 36 1 -1.0643 -2.1670 -3.2822 37 1 1.4223 -1.0506 2.2293 38 1 0.0954 -1.3071 4.2877 39 1 -1.6380 -3.0505 4.4259 40 1 -2.0431 -4.5388 2.5065 41 1 -0.7155 -4.2830 0.4485 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001301288621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:54 Heat of formation + Delta-G solvation = 22.349896 kcal Electronic energy + Delta-G solvation = -23614.193624 eV Core-core repulsion = 20459.774358 eV Total energy + Delta-G solvation = -3154.419266 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.76327 -38.30000 -36.93813 -33.99178 -33.35408 -31.04383 -30.61437 -29.64980 -27.66174 -25.81633 -23.92785 -23.57009 -21.32696 -21.13275 -20.55572 -19.21083 -17.26757 -17.05244 -15.91127 -15.61311 -15.09268 -14.92608 -14.64636 -14.24344 -13.84446 -13.62003 -13.50696 -13.13806 -12.47567 -12.38173 -12.13528 -11.96866 -11.86927 -11.53228 -11.29596 -11.17576 -11.06032 -10.79706 -10.76876 -10.54128 -10.09569 -10.02549 -9.66305 -9.57558 -9.38347 -9.35926 -8.70316 -8.26269 -7.66825 -7.55953 -7.36956 -6.13694 -4.27404 2.56963 2.63762 3.17282 3.27468 3.28199 3.90295 4.14866 4.24885 4.37775 5.02136 5.02880 5.11434 5.14392 5.24542 5.53068 5.62398 5.84975 5.87700 5.90311 5.99154 6.02850 6.07301 6.22329 6.24418 6.32790 6.44203 6.44642 6.49644 6.63715 6.69636 6.78365 6.82235 6.84622 6.90668 7.15462 7.23422 7.56949 7.65209 7.65692 7.75646 7.79294 8.17827 8.27858 8.54216 8.75640 9.35387 9.68738 10.86849 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.007593 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.126569 B = 3686.506300 C = 4743.310559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.079 3.921 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.056 3.944 10 H 0.056 0.944 11 C 0.549 3.451 12 O -0.547 6.547 13 N -0.606 5.606 14 C 0.112 3.888 15 C -0.101 4.101 16 C -0.125 4.125 17 H 0.089 0.911 18 C -0.185 4.185 19 C -0.159 4.159 20 H 0.101 0.899 21 C 0.149 3.851 22 C -0.015 4.015 23 C -0.064 4.064 24 C -0.148 4.148 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.100 4.100 28 H 0.265 0.735 29 H 0.124 0.876 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 -3.453 -4.686 7.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.035 3.965 10 H 0.074 0.926 11 C 0.340 3.660 12 O -0.423 6.423 13 N -0.340 5.340 14 C -0.011 4.011 15 C -0.139 4.139 16 C -0.143 4.143 17 H 0.107 0.893 18 C -0.223 4.223 19 C -0.177 4.177 20 H 0.120 0.880 21 C 0.025 3.975 22 C -0.016 4.016 23 C -0.082 4.082 24 C -0.167 4.167 25 C -0.163 4.163 26 C -0.163 4.163 27 C -0.119 4.119 28 H 0.075 0.925 29 H 0.141 0.859 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.146 0.854 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.218 -3.396 -4.605 6.565 hybrid contribution 0.168 1.429 -0.327 1.475 sum 3.386 -1.967 -4.933 6.298 Atomic orbital electron populations 1.70053 1.05437 1.26916 1.44523 1.24976 0.94716 0.98910 0.94339 0.86801 0.80187 0.84022 0.78406 1.20347 1.21184 1.19479 1.20577 0.92781 0.88714 1.55488 0.91265 1.17924 0.92799 0.98030 0.87723 0.92611 1.21116 0.89000 0.72192 0.83669 1.90516 1.16747 1.49821 1.85244 1.47001 1.06435 1.74841 1.05706 1.21147 0.81714 0.94763 1.03514 1.20690 0.97342 1.00712 0.95143 1.21432 0.97604 0.96923 0.98362 0.89301 1.23079 1.04247 0.99628 0.95302 1.22549 0.92491 1.02353 1.00349 0.88049 1.20457 0.95470 0.95608 0.85922 1.19822 0.94588 0.92215 0.94927 1.21137 0.98496 0.97234 0.91352 1.20988 0.98267 0.99046 0.98354 1.20767 0.99589 0.97862 0.98080 1.20817 1.00607 1.00387 0.94447 1.20976 0.95994 0.98850 0.96030 0.92502 0.85879 0.94913 0.90476 0.91736 0.89526 0.88941 0.93413 0.89660 0.85427 0.88093 0.88265 0.88148 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.54 10.89 55.43 0.60 -21.93 16 2 C 0.08 1.94 4.00 -17.82 -0.07 1.87 16 3 Si 0.88 19.33 29.39 -169.99 -5.00 14.33 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.54 -12.51 4.80 -34.44 -0.17 -12.67 16 8 H 0.07 1.54 7.52 -52.49 -0.39 1.15 16 9 C 0.06 1.30 1.97 -94.07 -0.19 1.11 16 10 H 0.06 1.18 7.79 -51.93 -0.40 0.78 16 11 C 0.55 13.03 5.34 -10.98 -0.06 12.97 16 12 O -0.55 -14.63 13.26 5.57 0.07 -14.55 16 13 N -0.61 -12.41 3.01 -176.19 -0.53 -12.94 16 14 C 0.11 1.99 5.41 -5.33 -0.03 1.97 16 15 C -0.10 -1.67 6.09 -28.26 -0.17 -1.85 16 16 C -0.12 -1.95 5.91 -92.47 -0.55 -2.50 16 17 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 18 C -0.19 -2.50 9.77 -26.76 -0.26 -2.76 16 19 C -0.16 -2.56 6.36 -90.74 -0.58 -3.14 16 20 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 21 C 0.15 2.78 6.24 -4.58 -0.03 2.75 16 22 C -0.01 -0.34 4.51 -104.62 -0.47 -0.82 16 23 C -0.06 -1.48 8.21 -39.58 -0.32 -1.81 16 24 C -0.15 -3.09 10.05 -39.58 -0.40 -3.49 16 25 C -0.14 -2.87 10.05 -39.58 -0.40 -3.27 16 26 C -0.14 -2.98 10.05 -39.58 -0.40 -3.37 16 27 C -0.10 -2.28 8.22 -39.58 -0.33 -2.61 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.12 2.32 4.04 -51.93 -0.21 2.11 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.48 7.99 -51.93 -0.41 1.07 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.23 8.12 -51.93 -0.42 0.80 16 35 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 36 H 0.09 1.79 7.01 -51.93 -0.36 1.43 16 37 H 0.13 3.02 6.02 -52.49 -0.32 2.71 16 38 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.11 2.41 7.00 -52.48 -0.37 2.04 16 LS Contribution 321.65 15.07 4.85 4.85 Total: -1.00 -28.35 321.65 -10.24 -38.59 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.83 Total: 9.29 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -4.41 Total: -17.63 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.07 Total: -34.88 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.07 Total: -14.55 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.00 Total: 14.33 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.35 -10.24 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001301288621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.939 kcal (2) G-P(sol) polarization free energy of solvation -28.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds