Wall clock time and date at job start Tue Mar 31 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99974 * 2 1 4 4 H 1.48493 * 109.47391 * 270.00112 * 3 2 1 5 5 H 1.48502 * 109.47060 * 30.00254 * 3 2 1 6 6 H 1.48506 * 109.47114 * 150.00018 * 3 2 1 7 7 C 1.37879 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99838 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00036 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47145 * 175.50374 * 9 7 2 11 11 C 1.46898 * 111.00132 * 71.52794 * 10 9 7 12 12 C 1.50702 * 109.47652 * 189.99998 * 11 10 9 13 13 C 1.38969 * 119.59196 * 269.73495 * 12 11 10 14 14 C 1.36474 * 120.62561 * 179.75707 * 13 12 11 15 15 C 1.39943 * 119.63854 * 0.50514 * 14 13 12 16 16 C 1.45921 * 134.04062 * 179.74967 * 15 14 13 17 17 N 1.30240 * 107.78862 * 180.02562 * 16 15 14 18 18 N 1.39866 * 110.08572 * 359.97438 * 17 16 15 19 19 H 0.97005 * 125.46151 * 180.02562 * 18 17 16 20 20 C 1.37035 * 109.07937 * 0.02562 * 18 17 16 21 21 C 1.36586 * 119.59140 * 89.99804 * 12 11 10 22 22 C 1.46893 * 111.00374 * 195.48718 * 10 9 7 23 23 C 1.52997 * 109.47186 * 66.56861 * 22 10 9 24 24 C 1.53000 * 117.50160 * 243.28927 * 23 22 10 25 25 C 1.53000 * 117.49913 * 174.62667 * 23 22 10 26 26 H 0.96994 * 120.00384 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46937 * 55.50566 * 9 7 2 28 28 H 1.08995 * 109.46979 * 295.50068 * 9 7 2 29 29 H 1.09001 * 109.47458 * 310.00567 * 11 10 9 30 30 H 1.09001 * 109.46986 * 70.00389 * 11 10 9 31 31 H 1.07991 * 119.68841 * 0.02562 * 13 12 11 32 32 H 1.07995 * 120.17977 * 180.25294 * 14 13 12 33 33 H 1.08007 * 126.10190 * 359.97438 * 16 15 14 34 34 H 1.07997 * 120.07736 * 359.96375 * 21 12 11 35 35 H 1.08994 * 109.47786 * 186.57372 * 22 10 9 36 36 H 1.09005 * 109.46686 * 306.57461 * 22 10 9 37 37 H 1.09007 * 115.54981 * 28.96633 * 23 22 10 38 38 H 1.08992 * 117.50213 * 359.97438 * 24 23 22 39 39 H 1.08997 * 117.49848 * 145.02551 * 24 23 22 40 40 H 1.08999 * 117.50129 * 214.98124 * 25 23 22 41 41 H 1.09003 * 117.50151 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5747 0.1070 11 6 3.7667 -3.3157 -1.1396 12 6 4.0513 -4.7785 -0.9158 13 6 5.3314 -5.2708 -1.1400 14 6 5.6138 -6.5908 -0.9393 15 6 4.6013 -7.4581 -0.5137 16 6 4.5478 -8.8851 -0.2136 17 7 3.3290 -9.1707 0.1457 18 7 2.5358 -8.0193 0.1113 19 1 1.5932 -7.9782 0.3370 20 6 3.3035 -6.9584 -0.2923 21 6 3.0466 -5.6053 -0.5003 22 6 5.4229 -2.6018 0.4758 23 6 5.5921 -2.0555 1.8949 24 6 6.4098 -0.7736 2.0657 25 6 6.9900 -2.1175 2.5138 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6122 0.8459 28 1 3.8745 -0.7514 -0.9287 29 1 2.7284 -3.1904 -1.4469 30 1 4.4251 -2.9327 -1.9193 31 1 6.1112 -4.6015 -1.4721 32 1 6.6121 -6.9648 -1.1119 33 1 5.3717 -9.5805 -0.2787 34 1 2.0553 -5.2107 -0.3332 35 1 5.7895 -3.6274 0.4353 36 1 5.9908 -1.9852 -0.2209 37 1 4.7406 -2.2016 2.5595 38 1 6.8276 -0.3197 1.1672 39 1 6.0965 -0.0766 2.8429 40 1 7.0581 -2.3038 3.5856 41 1 7.7893 -2.5471 1.9098 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119087659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:39 Heat of formation + Delta-G solvation = 116.809329 kcal Electronic energy + Delta-G solvation = -22000.818658 eV Core-core repulsion = 18882.788211 eV Total energy + Delta-G solvation = -3118.030447 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13241 -38.44763 -37.07114 -35.25017 -32.53749 -32.28730 -30.50412 -29.32624 -28.12422 -26.56952 -23.95337 -22.55818 -22.13920 -21.61349 -21.33605 -20.55460 -19.53847 -17.57827 -16.89923 -16.50369 -15.67312 -14.98516 -14.75744 -14.66899 -14.58725 -14.35956 -13.77645 -13.61277 -13.49533 -13.26769 -12.45032 -12.37141 -12.05320 -11.60379 -11.46134 -11.40645 -11.28778 -10.94986 -10.87509 -10.71097 -10.65501 -10.34669 -10.21974 -10.00615 -9.80347 -9.45324 -9.30909 -8.58404 -8.37827 -7.88430 -7.42151 -6.06252 -4.03064 1.08078 1.65238 2.56266 2.77193 3.27284 3.35490 3.37748 3.89481 4.10909 4.41414 4.65079 4.66529 4.73281 4.96202 5.04420 5.17486 5.23126 5.26763 5.37250 5.48386 5.55304 5.71285 5.81413 5.83371 5.85401 5.91334 6.02578 6.10616 6.16673 6.21736 6.34488 6.40950 6.48462 6.55494 6.66366 6.85441 6.87556 6.95077 7.04308 7.36153 7.61684 7.62087 7.88442 8.00446 8.64407 9.01772 9.55991 11.06901 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015894 B = 0.004844 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.250727 B = 5778.769280 C = 6983.029447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.871 3.129 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.507 4.507 8 H 0.080 0.920 9 C 0.160 3.840 10 N -0.516 5.516 11 C 0.094 3.906 12 C -0.013 4.013 13 C -0.150 4.150 14 C -0.048 4.048 15 C -0.190 4.190 16 C 0.071 3.929 17 N -0.259 5.259 18 N -0.511 5.511 19 H 0.439 0.561 20 C 0.132 3.868 21 C -0.119 4.119 22 C 0.078 3.922 23 C -0.132 4.132 24 C -0.185 4.185 25 C -0.185 4.185 26 H 0.263 0.737 27 H 0.039 0.961 28 H -0.017 1.017 29 H 0.099 0.901 30 H 0.034 0.966 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.193 0.807 34 H 0.132 0.868 35 H 0.075 0.925 36 H 0.023 0.977 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.913 -11.554 -0.712 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.698 3.302 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.545 4.545 8 H 0.098 0.902 9 C 0.034 3.966 10 N -0.240 5.240 11 C -0.034 4.034 12 C -0.017 4.017 13 C -0.170 4.170 14 C -0.069 4.069 15 C -0.198 4.198 16 C -0.126 4.126 17 N -0.073 5.073 18 N -0.227 5.227 19 H 0.283 0.717 20 C 0.016 3.984 21 C -0.141 4.141 22 C -0.050 4.050 23 C -0.150 4.150 24 C -0.222 4.222 25 C -0.222 4.222 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.000 1.000 29 H 0.117 0.883 30 H 0.052 0.948 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.209 0.791 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.041 0.959 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.671 -12.586 0.048 17.165 hybrid contribution 0.822 2.101 -0.684 2.358 sum 12.493 -10.485 -0.636 16.322 Atomic orbital electron populations 1.69885 1.06120 1.26794 1.51250 1.24876 0.94680 0.98769 0.94902 0.86920 0.80562 0.84189 0.78486 1.20414 1.21257 1.18884 1.21037 0.88802 0.94593 1.50073 0.90234 1.20255 0.96935 0.84164 0.95231 1.61963 1.14186 1.16975 1.30870 1.21074 1.03172 0.87874 0.91257 1.19564 0.92265 0.95770 0.94079 1.20623 0.96639 0.95231 1.04529 1.20203 0.97407 0.92407 0.96853 1.19858 0.94371 0.93721 1.11848 1.25000 0.94979 0.93957 0.98714 1.76481 1.03773 1.07910 1.19127 1.45926 1.11712 1.03453 1.61598 0.71652 1.18864 0.91419 0.90359 0.97750 1.19782 1.01168 0.88709 1.04457 1.21770 0.90325 0.99848 0.93065 1.22288 0.94353 1.00026 0.98337 1.23012 1.04981 0.91163 1.03061 1.22931 0.97302 1.01368 1.00628 0.92717 0.94348 0.99984 0.88269 0.94802 0.86056 0.85859 0.79059 0.85051 0.90646 0.95927 0.86867 0.89347 0.89205 0.89235 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 21.10 27.56 -169.99 -4.68 16.41 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.14 6.42 56.52 0.36 -5.78 16 7 C -0.51 -13.85 9.08 -34.44 -0.31 -14.16 16 8 H 0.08 2.35 7.64 -52.49 -0.40 1.95 16 9 C 0.16 3.71 3.69 -4.98 -0.02 3.69 16 10 N -0.52 -10.17 4.44 -237.52 -1.06 -11.22 16 11 C 0.09 1.66 4.94 -4.98 -0.02 1.64 16 12 C -0.01 -0.21 4.87 -104.95 -0.51 -0.72 16 13 C -0.15 -1.97 7.75 -39.95 -0.31 -2.28 16 14 C -0.05 -0.57 10.07 -39.58 -0.40 -0.97 16 15 C -0.19 -2.51 6.37 -105.21 -0.67 -3.18 16 16 C 0.07 0.82 12.28 -15.15 -0.19 0.63 16 17 N -0.26 -3.44 12.55 31.87 0.40 -3.04 16 18 N -0.51 -6.77 7.37 32.36 0.24 -6.53 16 19 H 0.44 4.76 8.96 -182.77 -1.64 3.12 16 20 C 0.13 1.91 7.34 -84.17 -0.62 1.29 16 21 C -0.12 -1.84 9.64 -39.79 -0.38 -2.23 16 22 C 0.08 1.30 5.02 -3.83 -0.02 1.28 16 23 C -0.13 -2.13 4.68 -90.62 -0.42 -2.55 16 24 C -0.19 -2.72 10.04 -26.69 -0.27 -2.99 16 25 C -0.18 -2.40 10.25 -26.69 -0.27 -2.68 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.04 0.91 5.54 -51.93 -0.29 0.63 16 28 H -0.02 -0.41 7.71 -51.93 -0.40 -0.81 16 29 H 0.10 1.96 6.91 -51.93 -0.36 1.61 16 30 H 0.03 0.56 8.06 -51.93 -0.42 0.15 16 31 H 0.12 1.40 7.86 -52.49 -0.41 0.99 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.19 1.39 8.06 -52.48 -0.42 0.97 16 34 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 35 H 0.08 1.15 5.45 -51.93 -0.28 0.87 16 36 H 0.02 0.37 7.85 -51.93 -0.41 -0.04 16 37 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 38 H 0.09 1.27 8.03 -51.93 -0.42 0.85 16 39 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -31.17 337.06 -10.92 -42.09 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.16 Total: 4.89 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -4.51 Total: -21.36 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.36 Total: -47.11 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.68 Total: 16.41 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.17 -10.92 -42.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119087659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.898 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds