Wall clock time and date at job start Tue Mar 31 2020 06:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38777 * 119.66772 * 2 1 4 4 C 1.37858 * 120.45676 * 180.02562 * 3 2 1 5 5 C 1.38835 * 119.68462 * 359.95812 * 4 3 2 6 6 N 1.38049 * 134.13833 * 179.97438 * 5 4 3 7 7 H 0.96998 * 126.34996 * 0.02562 * 6 5 4 8 8 C 1.36044 * 107.30216 * 180.02562 * 6 5 4 9 9 C 1.50697 * 124.94865 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.33406 * 325.69673 * 9 8 6 11 11 C 1.54903 * 110.37557 * 87.95798 * 9 8 6 12 12 C 1.55257 * 101.60220 * 155.81506 * 11 9 8 13 13 C 1.54323 * 103.08079 * 324.48525 * 12 11 9 14 14 N 1.47443 * 107.23540 * 22.20871 * 13 12 11 15 15 C 1.46900 * 111.00158 * 123.25357 * 14 13 12 16 16 C 1.50698 * 109.46814 * 69.15662 * 15 14 13 17 17 H 1.07997 * 120.00479 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99621 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00033 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99890 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47083 * 59.99978 * 20 18 16 22 22 H 1.48496 * 109.47327 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47064 * 300.00393 * 20 18 16 24 24 N 1.30104 * 110.09775 * 0.02562 * 8 6 5 25 25 C 1.35790 * 109.64320 * 359.97438 * 24 8 6 26 26 C 1.36605 * 119.66787 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47722 * 270.04030 * 1 2 3 28 28 H 1.09000 * 109.47100 * 30.03980 * 1 2 3 29 29 H 1.08998 * 109.46840 * 150.03892 * 1 2 3 30 30 H 1.08000 * 119.77356 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.15586 * 180.23958 * 4 3 2 32 32 H 1.09003 * 110.98753 * 273.99212 * 11 9 8 33 33 H 1.09001 * 110.98979 * 37.80112 * 11 9 8 34 34 H 1.08997 * 110.74097 * 206.05477 * 12 11 9 35 35 H 1.08994 * 110.60796 * 82.85662 * 12 11 9 36 36 H 1.09000 * 109.88951 * 262.79422 * 13 12 11 37 37 H 1.09006 * 110.01899 * 141.68997 * 13 12 11 38 38 H 1.08994 * 109.47303 * 189.15838 * 15 14 13 39 39 H 1.09002 * 109.47237 * 309.15991 * 15 14 13 40 40 H 0.96997 * 119.99869 * 179.97438 * 19 18 16 41 41 H 1.08005 * 120.05558 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1938 1.2058 0.0000 4 6 3.5723 1.2248 -0.0005 5 6 4.2764 0.0283 -0.0002 6 7 5.6178 -0.2979 -0.0010 7 1 6.3610 0.3254 -0.0017 8 6 5.7041 -1.6556 -0.0006 9 6 6.9916 -2.4387 -0.0007 10 1 7.7539 -1.9144 -0.5770 11 6 7.4796 -2.6744 1.4505 12 6 8.3565 -3.9446 1.2826 13 6 7.6042 -4.7478 0.2007 14 7 6.7703 -3.7927 -0.5518 15 6 7.0851 -3.8352 -1.9861 16 6 6.6199 -5.1470 -2.5637 17 1 6.1382 -5.8761 -1.9290 18 6 6.8083 -5.4161 -3.9028 19 7 7.3943 -4.5281 -4.6758 20 14 6.2323 -7.0425 -4.6187 21 1 4.7655 -7.1751 -4.4290 22 1 6.5503 -7.0855 -6.0686 23 1 6.9238 -8.1602 -3.9274 24 7 4.5131 -2.1792 -0.0002 25 6 3.5805 -1.1923 0.0003 26 6 2.1831 -1.1870 0.0005 27 1 -0.3634 0.0007 1.0276 28 1 -0.3633 0.8896 -0.5144 29 1 -0.3633 -0.8903 -0.5132 30 1 1.6448 2.1358 -0.0004 31 1 4.1019 2.1660 0.0034 32 1 8.0736 -1.8317 1.8043 33 1 6.6399 -2.8660 2.1185 34 1 8.4049 -4.5062 2.2155 35 1 9.3560 -3.6781 0.9395 36 1 6.9725 -5.5017 0.6706 37 1 8.3165 -5.2274 -0.4707 38 1 6.5783 -3.0146 -2.4937 39 1 8.1619 -3.7386 -2.1248 40 1 7.5272 -4.7176 -5.6178 41 1 1.6386 -2.1197 0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298502021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:59 Heat of formation + Delta-G solvation = 70.311810 kcal Electronic energy + Delta-G solvation = -22074.657237 eV Core-core repulsion = 18954.610507 eV Total energy + Delta-G solvation = -3120.046731 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.82704 -38.47917 -37.30931 -33.08511 -32.87511 -31.66163 -30.86749 -29.94585 -28.40225 -26.29399 -25.99909 -23.10656 -22.17188 -21.58274 -21.18398 -20.42328 -19.23918 -17.58781 -16.81549 -16.09258 -15.34861 -15.33565 -14.98332 -14.67255 -14.19787 -13.92745 -13.75629 -13.46505 -13.03929 -12.94986 -12.54956 -12.18290 -11.95461 -11.84843 -11.75019 -11.48856 -11.25211 -11.01713 -10.92116 -10.75469 -10.63351 -10.57520 -10.33234 -10.13114 -9.77811 -9.41926 -9.20866 -8.39272 -7.98998 -7.82950 -7.26799 -5.98395 -3.98485 1.18357 1.68275 3.05328 3.16533 3.38244 3.41506 3.46049 4.08516 4.42456 4.47441 4.69822 4.86049 4.96639 5.00750 5.17625 5.25160 5.34576 5.37692 5.41705 5.57598 5.59585 5.63740 5.67103 5.78948 5.83910 5.88787 6.01320 6.02486 6.12259 6.21532 6.28768 6.54646 6.61861 6.71834 6.74593 6.80605 7.08722 7.17489 7.27381 7.59023 7.84446 8.05856 8.19660 8.39656 8.55818 9.09024 9.65281 11.12789 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.004855 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.721833 B = 5765.469590 C = 6972.202943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.105 4.105 3 C -0.110 4.110 4 C -0.109 4.109 5 C 0.037 3.963 6 N -0.605 5.605 7 H 0.417 0.583 8 C 0.312 3.688 9 C 0.142 3.858 10 H 0.067 0.933 11 C -0.116 4.116 12 C -0.141 4.141 13 C 0.056 3.944 14 N -0.501 5.501 15 C 0.193 3.807 16 C -0.500 4.500 17 H 0.064 0.936 18 C 0.054 3.946 19 N -0.902 5.902 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.277 1.277 24 N -0.449 5.449 25 C 0.052 3.948 26 C -0.063 4.063 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.025 0.975 39 H -0.008 1.008 40 H 0.261 0.739 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.571 11.573 12.429 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.107 4.107 3 C -0.129 4.129 4 C -0.130 4.130 5 C -0.073 4.073 6 N -0.216 5.216 7 H 0.255 0.745 8 C 0.044 3.956 9 C 0.031 3.969 10 H 0.085 0.915 11 C -0.155 4.155 12 C -0.180 4.180 13 C -0.072 4.072 14 N -0.225 5.225 15 C 0.067 3.933 16 C -0.538 4.538 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.542 5.542 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.203 1.203 24 N -0.167 5.167 25 C -0.067 4.067 26 C -0.082 4.082 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.010 0.990 40 H 0.070 0.930 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.303 10.531 12.256 17.007 hybrid contribution 1.181 0.678 -0.834 1.597 sum -4.122 11.209 11.422 16.525 Atomic orbital electron populations 1.20704 0.91078 1.02588 1.01949 1.19291 0.95957 0.92508 1.02960 1.20643 0.92744 0.97444 1.02101 1.19847 0.93735 0.94363 1.05081 1.18870 0.84109 0.97036 1.07321 1.43091 1.06329 1.08233 1.63995 0.74507 1.23603 0.96312 0.79057 0.96584 1.20859 0.87353 0.92555 0.96161 0.91532 1.22729 0.99597 0.98076 0.95103 1.22864 0.98671 0.96349 1.00077 1.22670 0.94827 0.95366 0.94303 1.63252 1.53515 0.99732 1.06035 1.19908 0.94097 0.98358 0.80889 1.21075 1.37724 1.01282 0.93743 0.91756 1.24974 0.95448 0.97183 0.97021 1.69945 1.43606 1.34818 1.05852 0.86545 0.79396 0.83745 0.77649 1.20124 1.21465 1.20253 1.70650 0.96882 1.29343 1.19859 1.19307 0.94327 0.88579 1.04479 1.19876 0.90389 0.98088 0.99843 0.91580 0.91826 0.91593 0.85794 0.86415 0.91361 0.90357 0.91057 0.91702 0.91357 0.91681 0.95656 0.98994 0.92977 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.99 36.00 0.36 -0.66 16 2 C -0.10 -1.36 5.84 -105.02 -0.61 -1.97 16 3 C -0.11 -1.32 9.67 -39.52 -0.38 -1.70 16 4 C -0.11 -1.42 10.07 -39.50 -0.40 -1.82 16 5 C 0.04 0.59 7.30 -83.99 -0.61 -0.02 16 6 N -0.61 -9.19 6.23 -8.00 -0.05 -9.24 16 7 H 0.42 4.71 8.96 -40.82 -0.37 4.34 16 8 C 0.31 5.80 7.13 -154.82 -1.10 4.70 16 9 C 0.14 2.55 2.94 -67.34 -0.20 2.35 16 10 H 0.07 1.15 7.81 -51.93 -0.41 0.75 16 11 C -0.12 -1.65 6.49 -24.53 -0.16 -1.81 16 12 C -0.14 -2.01 6.94 -24.84 -0.17 -2.19 16 13 C 0.06 1.06 6.37 -2.83 -0.02 1.05 16 14 N -0.50 -11.00 4.61 -226.18 -1.04 -12.04 16 15 C 0.19 5.09 4.30 -4.98 -0.02 5.07 16 16 C -0.50 -14.38 8.63 -34.44 -0.30 -14.68 16 17 H 0.06 1.85 7.76 -52.49 -0.41 1.45 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 20 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 N -0.45 -9.52 11.02 -8.23 -0.09 -9.61 16 25 C 0.05 0.98 7.23 -84.70 -0.61 0.37 16 26 C -0.06 -1.00 9.67 -39.61 -0.38 -1.38 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.51 8.08 -51.93 -0.42 0.10 16 29 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 30 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.33 7.30 -51.93 -0.38 0.95 16 38 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 39 H -0.01 -0.21 7.98 -51.93 -0.41 -0.62 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 339.33 15.07 5.11 5.11 Total: -1.00 -33.82 339.33 -11.23 -45.05 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.17 Total: 1.23 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -4.71 Total: -11.22 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.45 Total: -57.40 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.82 -11.23 -45.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298502021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.365 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds