Wall clock time and date at job start Tue Mar 31 2020 05:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46793 * 2 1 4 4 C 1.50703 * 109.46839 * 119.99933 * 2 1 3 5 5 H 1.08002 * 119.99397 * 120.00235 * 4 2 1 6 6 C 1.37876 * 120.00021 * 299.99666 * 4 2 1 7 7 N 1.31511 * 119.99960 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99630 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46932 * 90.00470 * 8 6 4 10 10 H 1.48497 * 109.46836 * 209.99717 * 8 6 4 11 11 H 1.48492 * 109.47230 * 330.00379 * 8 6 4 12 12 N 1.46504 * 109.47035 * 239.99703 * 2 1 3 13 13 C 1.46493 * 120.00238 * 300.00407 * 12 2 1 14 14 C 1.34779 * 119.99567 * 119.99526 * 12 2 1 15 15 O 1.21577 * 119.99962 * 4.40068 * 14 12 2 16 16 C 1.47682 * 119.99661 * 184.39643 * 14 12 2 17 17 C 1.39766 * 119.96145 * 319.58114 * 16 14 12 18 18 C 1.37676 * 120.02527 * 180.02562 * 17 16 14 19 19 C 1.39493 * 119.83061 * 359.96967 * 18 17 16 20 20 C 1.39833 * 120.19566 * 359.97438 * 19 18 17 21 21 C 1.37469 * 119.99958 * 359.78403 * 20 19 18 22 22 C 1.50602 * 119.34999 * 180.09136 * 20 19 18 23 23 C 1.52749 * 109.81653 * 325.42348 * 22 20 19 24 24 C 1.50317 * 110.71631 * 50.36561 * 23 22 20 25 25 C 1.32634 * 121.07731 * 324.21385 * 24 23 22 26 26 H 1.09005 * 109.47268 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47113 * 299.99516 * 1 2 3 28 28 H 1.08997 * 109.47154 * 60.00238 * 1 2 3 29 29 H 0.97000 * 119.99422 * 180.02562 * 7 6 4 30 30 H 1.09007 * 109.47103 * 271.43779 * 13 12 2 31 31 H 1.08996 * 109.47786 * 151.43657 * 13 12 2 32 32 H 1.09006 * 109.47417 * 31.43501 * 13 12 2 33 33 H 1.07998 * 119.98519 * 0.02562 * 17 16 14 34 34 H 1.08003 * 120.08310 * 179.97438 * 18 17 16 35 35 H 1.07995 * 120.06884 * 180.23721 * 21 20 19 36 36 H 1.08998 * 109.41672 * 85.52334 * 22 20 19 37 37 H 1.08998 * 109.41723 * 205.38980 * 22 20 19 38 38 H 1.08999 * 109.22990 * 170.68726 * 23 22 20 39 39 H 1.09002 * 109.22345 * 290.09465 * 23 22 20 40 40 H 1.07999 * 119.46169 * 144.20796 * 24 23 22 41 41 H 1.08006 * 120.25496 * 180.46399 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6304 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1123 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.1528 1.1025 -1.8524 16 6 3.2051 -0.7005 -3.3361 17 6 3.5788 -2.0472 -3.3214 18 6 3.9636 -2.6681 -4.4883 19 6 3.9788 -1.9500 -5.6841 20 6 3.6040 -0.6029 -5.7003 21 6 3.2149 0.0163 -4.5362 22 6 3.6254 0.1537 -7.0023 23 6 4.7798 -0.3427 -7.8707 24 6 4.7603 -1.8421 -7.9749 25 6 4.3891 -2.5950 -6.9480 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1613 3.4844 30 1 2.4019 -2.7379 -0.9498 31 1 1.6487 -2.2917 -2.4996 32 1 0.6791 -2.2937 -1.0069 33 1 3.5657 -2.6008 -2.3942 34 1 4.2530 -3.7086 -4.4780 35 1 2.9216 1.0556 -4.5481 36 1 2.6835 -0.0029 -7.5279 37 1 3.7558 1.2170 -6.8014 38 1 4.6896 0.0877 -8.8681 39 1 5.7241 -0.0265 -7.4274 40 1 5.0533 -2.3141 -8.9010 41 1 4.3872 -3.6715 -7.0350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336612421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:17 Heat of formation + Delta-G solvation = 4.237747 kcal Electronic energy + Delta-G solvation = -22047.777747 eV Core-core repulsion = 18892.573079 eV Total energy + Delta-G solvation = -3155.204668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.25068 -38.73870 -35.88746 -35.36418 -32.88768 -32.48760 -30.63069 -29.20277 -28.89300 -26.25625 -25.22183 -24.13918 -23.39112 -21.91132 -21.00589 -18.85755 -18.27434 -16.77503 -16.48121 -15.83636 -15.75765 -15.24705 -14.89029 -14.56868 -14.28078 -14.08591 -13.62267 -13.20746 -12.92601 -12.71136 -12.64277 -12.53209 -12.24134 -12.00631 -11.75881 -11.55483 -11.35232 -11.05451 -10.85189 -10.75433 -10.72246 -10.64728 -10.25437 -10.15888 -9.98062 -9.17965 -9.01205 -8.74348 -8.42644 -8.06076 -7.59100 -6.06714 -4.14656 0.72784 1.44444 2.23649 3.27871 3.34173 3.35591 3.41609 3.87174 4.05030 4.40495 4.51539 4.54775 4.79736 4.92271 4.99378 5.08752 5.20883 5.23860 5.26479 5.37038 5.48404 5.64464 5.65672 5.77050 5.86227 5.95689 6.02489 6.11482 6.16589 6.26849 6.32188 6.51628 6.54453 6.74298 6.76587 6.82334 6.96848 7.05201 7.43024 7.51963 7.71511 8.01338 8.19386 8.50758 8.82882 9.02625 9.51717 10.98684 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.034285 B = 0.003664 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.488924 B = 7640.420324 C = 7981.438945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.584 5.584 13 C 0.079 3.921 14 C 0.542 3.458 15 O -0.547 6.547 16 C -0.109 4.109 17 C -0.096 4.096 18 C -0.113 4.113 19 C -0.049 4.049 20 C -0.087 4.087 21 C -0.068 4.068 22 C -0.078 4.078 23 C -0.092 4.092 24 C -0.145 4.145 25 C -0.120 4.120 26 H 0.031 0.969 27 H 0.095 0.905 28 H 0.011 0.989 29 H 0.263 0.737 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.021 -7.390 -19.309 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.064 4.064 14 C 0.329 3.671 15 O -0.426 6.426 16 C -0.112 4.112 17 C -0.115 4.115 18 C -0.131 4.131 19 C -0.050 4.050 20 C -0.087 4.087 21 C -0.087 4.087 22 C -0.115 4.115 23 C -0.129 4.129 24 C -0.163 4.163 25 C -0.138 4.138 26 H 0.050 0.950 27 H 0.113 0.887 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.133 0.867 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.086 -6.665 -18.994 20.540 hybrid contribution 0.293 -0.707 0.984 1.247 sum 4.379 -7.372 -18.010 19.947 Atomic orbital electron populations 1.22103 0.98112 0.99454 1.00912 1.18983 0.90889 0.94555 0.79837 0.91812 1.21307 1.31794 1.12989 0.90245 0.92268 1.24893 0.94930 0.95003 0.98966 1.69878 1.36347 1.22659 1.23759 0.86482 0.78660 0.79851 0.82321 1.20593 1.21122 1.19917 1.48172 1.48351 1.11659 1.23240 1.21902 1.01468 0.83166 0.99903 1.18267 0.79515 0.86052 0.83236 1.90744 1.55789 1.18502 1.77592 1.20264 1.02053 0.94369 0.94543 1.21595 0.97253 0.93606 0.99013 1.21061 1.00631 0.99800 0.91639 1.18968 0.99484 0.93008 0.93494 1.19820 1.00238 0.93547 0.95056 1.20915 0.97526 0.99806 0.90456 1.20402 0.99102 0.99385 0.92586 1.20432 0.99183 0.93148 1.00158 1.23182 0.99529 0.95590 0.98045 1.21642 1.00841 0.99034 0.92266 0.95024 0.88683 0.96943 0.92677 0.93050 0.91981 0.91011 0.84501 0.85500 0.85178 0.90481 0.90132 0.90598 0.90531 0.86732 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.95 37.16 0.33 -3.23 16 2 C 0.26 6.69 2.63 -69.08 -0.18 6.51 16 3 H 0.06 1.92 6.91 -51.93 -0.36 1.56 16 4 C -0.52 -14.35 8.37 -34.44 -0.29 -14.64 16 5 H 0.06 1.59 7.61 -52.49 -0.40 1.19 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.68 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 12 N -0.58 -12.89 2.75 -176.43 -0.49 -13.38 16 13 C 0.08 1.38 8.14 59.84 0.49 1.86 16 14 C 0.54 11.96 7.32 -12.40 -0.09 11.87 16 15 O -0.55 -14.20 16.27 5.30 0.09 -14.11 16 16 C -0.11 -1.90 5.20 -104.89 -0.55 -2.45 16 17 C -0.10 -1.41 7.45 -39.22 -0.29 -1.70 16 18 C -0.11 -1.40 9.80 -39.32 -0.39 -1.78 16 19 C -0.05 -0.61 5.78 -104.96 -0.61 -1.21 16 20 C -0.09 -1.13 5.67 -104.35 -0.59 -1.72 16 21 C -0.07 -1.06 9.29 -39.28 -0.36 -1.43 16 22 C -0.08 -0.78 5.95 -28.06 -0.17 -0.94 16 23 C -0.09 -0.78 6.05 -28.20 -0.17 -0.95 16 24 C -0.15 -1.24 10.03 -36.39 -0.36 -1.61 16 25 C -0.12 -1.17 9.90 -37.61 -0.37 -1.54 16 26 H 0.03 0.70 6.67 -51.93 -0.35 0.35 16 27 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.05 0.84 7.22 -51.93 -0.37 0.47 16 31 H 0.06 0.92 5.43 -51.93 -0.28 0.63 16 32 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 33 H 0.14 1.91 5.59 -52.49 -0.29 1.62 16 34 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 330.13 15.07 4.97 4.97 Total: -1.00 -31.84 330.13 -9.15 -41.00 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.64 Total: 1.30 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -3.70 Total: -11.28 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.14 Total: -38.05 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.09 Total: -14.11 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.84 -9.15 -41.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336612421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.237 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds