Wall clock time and date at job start Tue Mar 31 2020 05:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47054 * 206.99112 * 3 2 1 5 5 C 1.46904 * 111.00193 * 199.65644 * 4 3 2 6 6 C 1.53005 * 109.47081 * 74.74206 * 5 4 3 7 7 H 1.08997 * 109.46860 * 52.89499 * 6 5 4 8 8 O 1.42893 * 109.47025 * 292.89486 * 6 5 4 9 9 C 1.50704 * 109.46961 * 172.89144 * 6 5 4 10 10 H 1.07999 * 119.99897 * 0.02562 * 9 6 5 11 11 C 1.37875 * 119.99844 * 180.02562 * 9 6 5 12 12 N 1.31512 * 119.99942 * 0.02562 * 11 9 6 13 13 Si 1.86804 * 119.99868 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.47186 * 90.00054 * 13 11 9 15 15 H 1.48502 * 109.46921 * 209.99794 * 13 11 9 16 16 H 1.48496 * 109.47062 * 329.99936 * 13 11 9 17 17 C 1.46902 * 111.00038 * 75.70464 * 4 3 2 18 18 H 1.08996 * 110.34309 * 319.14369 * 17 4 3 19 19 C 1.54350 * 110.30028 * 197.02196 * 17 4 3 20 20 C 1.54356 * 102.56444 * 214.82381 * 19 17 4 21 21 C 1.51362 * 105.17344 * 26.25157 * 20 19 17 22 22 C 1.38496 * 130.39486 * 162.81533 * 21 20 19 23 23 C 1.38105 * 120.21392 * 179.97438 * 22 21 20 24 24 C 1.38254 * 119.93865 * 359.97438 * 23 22 21 25 25 C 1.38099 * 119.93272 * 0.02562 * 24 23 22 26 26 C 1.38225 * 109.75600 * 342.80649 * 21 20 19 27 27 H 4.40878 * 5.52171 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.47637 * 86.99447 * 3 2 1 29 29 H 1.09006 * 109.47406 * 326.98976 * 3 2 1 30 30 H 1.09000 * 109.47200 * 194.74429 * 5 4 3 31 31 H 1.09003 * 109.46978 * 314.74719 * 5 4 3 32 32 H 0.96701 * 114.00393 * 299.99596 * 8 6 5 33 33 H 0.96997 * 120.00094 * 180.02562 * 12 11 9 34 34 H 1.08993 * 110.82332 * 96.50225 * 19 17 4 35 35 H 1.08997 * 110.82331 * 333.14606 * 19 17 4 36 36 H 1.09003 * 110.29648 * 145.17683 * 20 19 17 37 37 H 1.08994 * 110.29877 * 267.22237 * 20 19 17 38 38 H 1.07997 * 119.89274 * 0.02562 * 22 21 20 39 39 H 1.08006 * 120.02684 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.03106 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.89145 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.2350 0.6286 5 6 4.5281 1.5037 0.2474 6 6 4.5728 2.0157 -1.1938 7 1 3.8920 2.8601 -1.3006 8 8 4.1776 0.9696 -2.0833 9 6 5.9751 2.4556 -1.5272 10 1 6.7563 2.3775 -0.7856 11 6 6.2607 2.9579 -2.7791 12 7 5.3093 3.0535 -3.6820 13 14 7.9990 3.5026 -3.1927 14 1 8.7573 2.3552 -3.7526 15 1 7.9493 4.5987 -4.1933 16 1 8.6722 3.9870 -1.9609 17 6 2.9913 1.1747 2.0893 18 1 2.0386 0.7182 2.3577 19 6 3.0973 2.5896 2.6967 20 6 3.8109 2.3259 4.0398 21 6 4.6094 1.0586 3.8220 22 6 5.6646 0.5273 4.5447 23 6 6.2468 -0.6620 4.1522 24 6 5.7751 -1.3253 3.0347 25 6 4.7230 -0.7971 2.3127 26 6 4.1384 0.3959 2.7041 27 1 -1.0502 -0.0002 -0.0003 28 1 3.0094 -0.0531 -1.0262 29 1 3.0097 -0.8610 0.5599 30 1 4.9483 2.2570 0.9138 31 1 5.1096 0.5850 0.3248 32 1 4.7404 0.1843 -2.0419 33 1 5.5102 3.4065 -4.5628 34 1 2.1077 3.0159 2.8610 35 1 3.6970 3.2405 2.0606 36 1 4.4756 3.1546 4.2839 37 1 3.0793 2.1819 4.8348 38 1 6.0329 1.0442 5.4185 39 1 7.0692 -1.0738 4.7183 40 1 6.2290 -2.2556 2.7267 41 1 4.3548 -1.3160 1.4401 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929335708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:22 Heat of formation + Delta-G solvation = 43.382789 kcal Electronic energy + Delta-G solvation = -22785.302973 eV Core-core repulsion = 19631.795761 eV Total energy + Delta-G solvation = -3153.507212 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.44403 -37.45597 -35.54854 -34.38861 -32.37316 -32.13298 -30.65264 -28.85023 -28.67942 -27.01086 -25.44555 -23.18225 -22.52039 -21.03755 -20.71578 -19.62512 -17.82536 -16.99771 -16.27144 -15.77482 -15.17452 -15.00897 -14.61623 -14.57473 -14.38604 -13.99590 -13.72411 -13.24231 -12.90077 -12.77886 -12.58248 -12.36340 -12.16836 -11.59016 -11.29976 -11.18780 -11.04388 -11.01309 -10.89769 -10.80399 -10.78766 -10.45978 -10.18703 -9.90443 -9.61777 -9.05773 -8.67512 -8.56971 -8.42629 -8.16579 -7.62244 -5.99623 -4.17916 1.46210 1.48990 3.14171 3.27805 3.29881 3.35307 3.38099 3.85631 4.34429 4.47998 4.58517 4.76159 4.90030 5.07882 5.09390 5.18540 5.26594 5.33898 5.38255 5.59490 5.68358 5.70801 5.85455 5.88641 6.04183 6.09182 6.13029 6.17321 6.26882 6.28624 6.40003 6.46197 6.55700 6.58561 6.62644 6.75345 6.93766 7.10046 7.45255 7.61664 7.78058 7.96478 8.06709 8.21097 8.85332 9.34233 9.58251 11.04346 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013290 B = 0.006048 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.354276 B = 4628.188869 C = 5715.111331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.148 4.148 3 C 0.127 3.873 4 N -0.514 5.514 5 C 0.035 3.965 6 C 0.235 3.765 7 H 0.065 0.935 8 O -0.557 6.557 9 C -0.571 4.571 10 H 0.054 0.946 11 C 0.081 3.919 12 N -0.857 5.857 13 Si 0.887 3.113 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.118 3.882 18 H 0.087 0.913 19 C -0.110 4.110 20 C -0.082 4.082 21 C -0.093 4.093 22 C -0.111 4.111 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.104 4.104 26 C -0.113 4.113 27 H 0.211 0.789 28 H 0.139 0.861 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.341 0.659 33 H 0.260 0.740 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 -6.502 14.730 16.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.149 4.149 3 C 0.001 3.999 4 N -0.235 5.235 5 C -0.092 4.092 6 C 0.178 3.822 7 H 0.083 0.917 8 O -0.360 6.360 9 C -0.610 4.610 10 H 0.073 0.927 11 C -0.125 4.125 12 N -0.493 5.493 13 Si 0.714 3.286 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 C 0.009 3.991 18 H 0.105 0.895 19 C -0.148 4.148 20 C -0.119 4.119 21 C -0.093 4.093 22 C -0.129 4.129 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.122 4.122 26 C -0.115 4.115 27 H 0.228 0.772 28 H 0.156 0.844 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.184 0.816 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.886 -5.584 14.199 15.744 hybrid contribution 1.832 -0.748 0.252 1.995 sum -2.054 -6.332 14.451 15.910 Atomic orbital electron populations 1.24679 0.95716 1.01860 1.03262 1.23216 0.94394 0.98852 0.98444 1.19883 0.84829 0.91002 1.04179 1.62205 1.22873 1.33597 1.04860 1.23105 0.85032 0.99561 1.01489 1.19446 0.95043 0.86573 0.81158 0.91727 1.86556 1.55764 1.27426 1.66259 1.21596 0.95399 1.45229 0.98727 0.92745 1.25011 0.96720 0.94400 0.96399 1.70079 1.31810 1.42843 1.04517 0.86704 0.85141 0.78448 0.78265 1.20589 1.21115 1.19864 1.21506 0.95018 0.94288 0.88312 0.89479 1.22361 1.01158 0.96387 0.94857 1.21074 0.97875 0.94571 0.98429 1.20568 0.95992 0.97065 0.95712 1.20579 0.96183 0.96239 0.99893 1.20973 1.00070 0.95568 0.97464 1.21010 0.97117 1.00082 0.95783 1.20803 0.96630 0.95223 0.99528 1.21460 0.98589 0.94996 0.96454 0.77217 0.84393 0.93243 0.91028 0.95080 0.81557 0.92998 0.90509 0.89562 0.90719 0.90513 0.86599 0.86254 0.86153 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -3.59 19.25 29.55 0.57 -3.02 16 2 C -0.15 -2.55 12.81 -37.12 -0.48 -3.03 16 3 C 0.13 2.19 5.10 -6.61 -0.03 2.16 16 4 N -0.51 -9.26 4.27 -230.09 -0.98 -10.25 16 5 C 0.03 0.70 3.43 -3.82 -0.01 0.69 16 6 C 0.24 5.82 3.03 -27.88 -0.08 5.73 16 7 H 0.07 1.83 8.14 -51.93 -0.42 1.40 16 8 O -0.56 -13.61 9.86 -35.23 -0.35 -13.96 16 9 C -0.57 -15.42 8.75 -34.44 -0.30 -15.72 16 10 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 11 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 12 N -0.86 -25.15 12.84 55.43 0.71 -24.44 16 13 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 C 0.12 1.82 2.75 -67.68 -0.19 1.64 16 18 H 0.09 1.34 7.36 -51.93 -0.38 0.96 16 19 C -0.11 -1.54 6.46 -25.31 -0.16 -1.70 16 20 C -0.08 -1.00 6.77 -26.85 -0.18 -1.18 16 21 C -0.09 -1.29 6.14 -104.21 -0.64 -1.93 16 22 C -0.11 -1.41 10.04 -39.54 -0.40 -1.80 16 23 C -0.12 -1.50 10.05 -39.62 -0.40 -1.90 16 24 C -0.12 -1.58 10.05 -39.63 -0.40 -1.98 16 25 C -0.10 -1.51 7.92 -39.54 -0.31 -1.82 16 26 C -0.11 -1.70 4.46 -104.05 -0.46 -2.17 16 27 H 0.21 2.33 7.80 -54.08 -0.42 1.91 16 28 H 0.14 2.63 4.67 -51.93 -0.24 2.39 16 29 H 0.05 0.77 5.08 -51.93 -0.26 0.51 16 30 H 0.07 1.49 6.44 -51.93 -0.33 1.16 16 31 H 0.03 0.62 6.36 -51.93 -0.33 0.28 16 32 H 0.34 7.34 8.85 45.56 0.40 7.74 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.37 6.73 -51.93 -0.35 1.02 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 40 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 41 H 0.12 1.68 5.71 -52.49 -0.30 1.38 16 LS Contribution 332.04 15.07 5.00 5.00 Total: -1.00 -30.64 332.04 -8.93 -39.58 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -4.72 Total: 11.88 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -3.58 Total: -23.88 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: -0.27 Total: -34.69 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.35 Total: -13.96 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.64 -8.93 -39.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929335708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.961 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds