Wall clock time and date at job start Tue Mar 31 2020 05:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47054 * 206.99112 * 3 2 1 5 5 C 1.46904 * 111.00193 * 199.65644 * 4 3 2 6 6 C 1.53005 * 109.47081 * 74.74206 * 5 4 3 7 7 H 1.08997 * 109.46860 * 52.89499 * 6 5 4 8 8 O 1.42893 * 109.47025 * 292.89486 * 6 5 4 9 9 C 1.50704 * 109.46961 * 172.89144 * 6 5 4 10 10 H 1.07999 * 119.99897 * 0.02562 * 9 6 5 11 11 C 1.37875 * 119.99844 * 180.02562 * 9 6 5 12 12 N 1.31512 * 119.99942 * 0.02562 * 11 9 6 13 13 Si 1.86804 * 119.99868 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.47186 * 90.00054 * 13 11 9 15 15 H 1.48502 * 109.46921 * 209.99794 * 13 11 9 16 16 H 1.48496 * 109.47062 * 329.99936 * 13 11 9 17 17 C 1.46902 * 111.00038 * 75.70464 * 4 3 2 18 18 H 1.08996 * 110.34309 * 319.14369 * 17 4 3 19 19 C 1.54350 * 110.30028 * 197.02196 * 17 4 3 20 20 C 1.54356 * 102.56444 * 214.82381 * 19 17 4 21 21 C 1.51362 * 105.17344 * 26.25157 * 20 19 17 22 22 C 1.38496 * 130.39486 * 162.81533 * 21 20 19 23 23 C 1.38105 * 120.21392 * 179.97438 * 22 21 20 24 24 C 1.38254 * 119.93865 * 359.97438 * 23 22 21 25 25 C 1.38099 * 119.93272 * 0.02562 * 24 23 22 26 26 C 1.38225 * 109.75600 * 342.80649 * 21 20 19 27 27 H 4.40878 * 5.52171 * 179.97438 * 4 1 2 28 28 H 1.08998 * 109.47637 * 86.99447 * 3 2 1 29 29 H 1.09006 * 109.47406 * 326.98976 * 3 2 1 30 30 H 1.09000 * 109.47200 * 194.74429 * 5 4 3 31 31 H 1.09003 * 109.46978 * 314.74719 * 5 4 3 32 32 H 0.96701 * 114.00393 * 299.99596 * 8 6 5 33 33 H 0.96997 * 120.00094 * 180.02562 * 12 11 9 34 34 H 1.08993 * 110.82332 * 96.50225 * 19 17 4 35 35 H 1.08997 * 110.82331 * 333.14606 * 19 17 4 36 36 H 1.09003 * 110.29648 * 145.17683 * 20 19 17 37 37 H 1.08994 * 110.29877 * 267.22237 * 20 19 17 38 38 H 1.07997 * 119.89274 * 0.02562 * 22 21 20 39 39 H 1.08006 * 120.02684 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.03106 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.89145 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.2350 0.6286 5 6 4.5281 1.5037 0.2474 6 6 4.5728 2.0157 -1.1938 7 1 3.8920 2.8601 -1.3006 8 8 4.1776 0.9696 -2.0833 9 6 5.9751 2.4556 -1.5272 10 1 6.7563 2.3775 -0.7856 11 6 6.2607 2.9579 -2.7791 12 7 5.3093 3.0535 -3.6820 13 14 7.9990 3.5026 -3.1927 14 1 8.7573 2.3552 -3.7526 15 1 7.9493 4.5987 -4.1933 16 1 8.6722 3.9870 -1.9609 17 6 2.9913 1.1747 2.0893 18 1 2.0386 0.7182 2.3577 19 6 3.0973 2.5896 2.6967 20 6 3.8109 2.3259 4.0398 21 6 4.6094 1.0586 3.8220 22 6 5.6646 0.5273 4.5447 23 6 6.2468 -0.6620 4.1522 24 6 5.7751 -1.3253 3.0347 25 6 4.7230 -0.7971 2.3127 26 6 4.1384 0.3959 2.7041 27 1 -1.0502 -0.0002 -0.0003 28 1 3.0094 -0.0531 -1.0262 29 1 3.0097 -0.8610 0.5599 30 1 4.9483 2.2570 0.9138 31 1 5.1096 0.5850 0.3248 32 1 4.7404 0.1843 -2.0419 33 1 5.5102 3.4065 -4.5628 34 1 2.1077 3.0159 2.8610 35 1 3.6970 3.2405 2.0606 36 1 4.4756 3.1546 4.2839 37 1 3.0793 2.1819 4.8348 38 1 6.0329 1.0442 5.4185 39 1 7.0692 -1.0738 4.7183 40 1 6.2290 -2.2556 2.7267 41 1 4.3548 -1.3160 1.4401 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929335708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:22 Heat of formation + Delta-G solvation = 24.324339 kcal Electronic energy + Delta-G solvation = -22786.129409 eV Core-core repulsion = 19631.795761 eV Total energy + Delta-G solvation = -3154.333648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.57562 -38.88823 -37.09243 -35.68981 -34.24470 -33.66505 -31.77529 -30.43610 -29.88920 -28.18173 -27.25903 -24.67969 -23.58831 -22.62619 -21.81845 -20.95803 -19.05548 -18.97211 -17.49394 -17.03765 -16.63756 -16.43623 -16.23347 -15.99017 -15.77662 -15.37926 -15.08017 -14.80159 -14.31466 -13.93123 -13.90120 -13.63079 -13.52781 -13.09492 -12.88838 -12.77418 -12.63180 -12.47829 -12.27310 -12.22043 -12.06017 -11.83948 -11.62067 -11.31001 -11.02108 -10.99106 -10.70086 -10.00303 -9.69522 -9.50603 -9.06531 -8.11902 -6.37741 0.44268 0.47721 1.40105 1.40963 1.51632 1.85429 2.02101 2.39260 2.84078 3.13501 3.16675 3.53560 3.61641 3.71747 4.01876 4.08476 4.15483 4.22624 4.27490 4.34866 4.42874 4.58579 4.60629 4.64438 4.73896 4.80116 4.87888 4.90651 5.06652 5.14108 5.15793 5.23353 5.24979 5.30652 5.55855 5.60988 5.63793 5.67671 5.76163 6.02959 6.12137 6.25038 6.26872 6.75011 6.80856 7.33857 7.53687 8.92222 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013290 B = 0.006048 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.354276 B = 4628.188869 C = 5715.111331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.203 4.203 3 C 0.132 3.868 4 N -0.526 5.526 5 C 0.064 3.936 6 C 0.240 3.760 7 H 0.020 0.980 8 O -0.568 6.568 9 C -0.583 4.583 10 H 0.056 0.944 11 C 0.029 3.971 12 N -0.897 5.897 13 Si 0.956 3.044 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.266 1.266 17 C 0.119 3.881 18 H 0.087 0.913 19 C -0.111 4.111 20 C -0.074 4.074 21 C -0.105 4.105 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.130 4.130 25 C -0.123 4.123 26 C -0.135 4.135 27 H 0.250 0.750 28 H 0.116 0.884 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.353 0.647 33 H 0.261 0.739 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.387 -7.016 16.695 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.204 4.204 3 C 0.006 3.994 4 N -0.248 5.248 5 C -0.063 4.063 6 C 0.182 3.818 7 H 0.038 0.962 8 O -0.372 6.372 9 C -0.621 4.621 10 H 0.074 0.926 11 C -0.174 4.174 12 N -0.534 5.534 13 Si 0.781 3.219 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.191 1.191 17 C 0.011 3.989 18 H 0.105 0.895 19 C -0.148 4.148 20 C -0.111 4.111 21 C -0.105 4.105 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.147 4.147 25 C -0.141 4.141 26 C -0.137 4.137 27 H 0.266 0.734 28 H 0.133 0.867 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.198 0.802 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.191 -6.111 16.183 17.590 hybrid contribution 1.520 -0.641 -0.328 1.682 sum -1.671 -6.751 15.855 17.313 Atomic orbital electron populations 1.25608 0.96574 0.99460 1.00743 1.23450 0.95023 1.01132 1.00765 1.19670 0.85584 0.91201 1.02902 1.62094 1.21170 1.34513 1.06989 1.22546 0.86687 0.99001 0.98080 1.19184 0.92908 0.85789 0.83872 0.96232 1.86504 1.56150 1.27848 1.66704 1.21954 0.96359 1.44940 0.98869 0.92599 1.25846 1.00815 0.94406 0.96297 1.70220 1.34112 1.44164 1.04947 0.85612 0.80077 0.78105 0.78108 1.19735 1.20912 1.19067 1.21514 0.95519 0.95413 0.86446 0.89480 1.22359 1.01760 0.95108 0.95610 1.21061 0.98180 0.94254 0.97612 1.20860 0.96573 0.97552 0.95562 1.20937 0.95532 0.96471 1.00441 1.21371 1.00345 0.95203 0.97056 1.21311 0.96616 1.00899 0.95918 1.20924 0.97653 0.95510 0.99991 1.21451 0.99029 0.95697 0.97506 0.73412 0.86686 0.91921 0.91925 0.94789 0.80232 0.93020 0.89215 0.92025 0.89619 0.88320 0.84101 0.83374 0.84242 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.93 19.25 74.32 1.43 -4.50 16 2 C -0.20 -7.01 12.81 31.13 0.40 -6.61 16 3 C 0.13 4.73 5.10 84.50 0.43 5.16 16 4 N -0.53 -19.60 4.27 -881.86 -3.77 -23.37 16 5 C 0.06 2.69 3.43 86.30 0.30 2.98 16 6 C 0.24 12.41 3.03 29.85 0.09 12.50 16 7 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 8 O -0.57 -28.97 9.86 -148.98 -1.47 -30.44 16 9 C -0.58 -32.18 8.75 25.60 0.22 -31.96 16 10 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 11 C 0.03 1.63 5.40 84.65 0.46 2.09 16 12 N -0.90 -54.03 12.84 21.45 0.28 -53.76 16 13 Si 0.96 43.56 29.54 68.60 2.03 45.59 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 17 C 0.12 3.72 2.75 44.94 0.12 3.84 16 18 H 0.09 2.67 7.36 -2.39 -0.02 2.66 16 19 C -0.11 -3.07 6.46 31.51 0.20 -2.87 16 20 C -0.07 -1.67 6.77 30.52 0.21 -1.46 16 21 C -0.10 -2.75 6.14 -19.60 -0.12 -2.87 16 22 C -0.12 -2.64 10.04 22.30 0.22 -2.41 16 23 C -0.12 -2.65 10.05 22.24 0.22 -2.43 16 24 C -0.13 -3.15 10.05 22.24 0.22 -2.93 16 25 C -0.12 -3.52 7.92 22.30 0.18 -3.34 16 26 C -0.14 -4.01 4.46 -19.50 -0.09 -4.10 16 27 H 0.25 4.72 7.80 -4.41 -0.03 4.68 16 28 H 0.12 4.62 4.67 -2.39 -0.01 4.61 16 29 H 0.06 2.02 5.08 -2.38 -0.01 2.01 16 30 H 0.06 2.70 6.44 -2.39 -0.02 2.68 16 31 H 0.03 1.39 6.36 -2.39 -0.02 1.37 16 32 H 0.35 15.81 8.85 -74.06 -0.66 15.16 16 33 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 35 H 0.06 2.01 6.73 -2.39 -0.02 2.00 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 40 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 41 H 0.11 3.25 5.71 -2.91 -0.02 3.23 16 Total: -1.00 -67.41 332.04 1.95 -65.46 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.39 Total: 35.42 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 4.50 Total: -38.90 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -3.49 Total: -77.13 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.47 Total: -30.44 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -67.41 1.95 -65.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929335708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.782 kcal (2) G-P(sol) polarization free energy of solvation -67.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds