Wall clock time and date at job start Tue Mar 31 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35947 * 116.99906 * 2 1 4 4 C 1.36364 * 119.59829 * 0.02562 * 3 2 1 5 5 C 1.40560 * 119.72507 * 180.02562 * 4 3 2 6 6 C 1.40526 * 121.15633 * 180.02562 * 5 4 3 7 7 C 1.36127 * 119.67776 * 180.02562 * 6 5 4 8 8 C 1.39354 * 120.98966 * 359.97438 * 7 6 5 9 9 C 1.36114 * 120.97960 * 359.97438 * 8 7 6 10 10 C 1.40555 * 119.67650 * 0.02562 * 9 8 7 11 11 C 1.40490 * 121.16512 * 179.72953 * 10 9 8 12 12 C 1.36607 * 119.68272 * 179.70628 * 11 10 9 13 13 N 1.39771 * 119.60676 * 180.29530 * 12 11 10 14 14 C 1.46500 * 120.00005 * 0.30187 * 13 12 11 15 15 C 1.52999 * 109.46712 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47100 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47517 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99779 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00110 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99977 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99978 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46565 * 59.99995 * 21 19 17 23 23 H 1.48502 * 109.47072 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47001 * 299.99894 * 21 19 17 25 25 H 1.09006 * 109.47313 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47160 * 299.99648 * 1 2 3 27 27 H 1.09003 * 109.47734 * 59.99745 * 1 2 3 28 28 H 1.08002 * 120.13321 * 359.97438 * 4 3 2 29 29 H 1.07997 * 120.15832 * 0.03306 * 6 5 4 30 30 H 1.08004 * 119.50299 * 180.02562 * 7 6 5 31 31 H 1.07998 * 119.50703 * 179.97438 * 8 7 6 32 32 H 1.08001 * 120.16333 * 180.02562 * 9 8 7 33 33 H 1.08001 * 120.15868 * 0.02562 * 11 10 9 34 34 H 0.97003 * 119.99609 * 180.30446 * 13 12 11 35 35 H 1.08991 * 109.47165 * 299.99866 * 14 13 12 36 36 H 1.08996 * 109.47180 * 60.00561 * 14 13 12 37 37 H 1.08996 * 109.47489 * 300.00235 * 15 14 13 38 38 H 1.09002 * 109.47493 * 60.00329 * 15 14 13 39 39 H 1.09005 * 109.46958 * 300.00157 * 16 15 14 40 40 H 1.09002 * 109.47182 * 60.00049 * 16 15 14 41 41 H 0.97007 * 119.99701 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2954 2.3497 0.0005 5 6 1.9307 3.6035 0.0000 6 6 1.1866 4.7956 0.0010 7 6 1.8331 5.9936 0.0000 8 6 3.2251 6.0578 -0.0017 9 6 3.9787 4.9243 -0.0017 10 6 3.3471 3.6687 -0.0006 11 6 4.0943 2.4789 -0.0063 12 6 3.4490 1.2749 0.0011 13 7 4.1940 0.0922 0.0017 14 6 5.6579 0.1487 0.0012 15 6 6.2230 -1.2732 0.0027 16 6 7.7518 -1.2143 0.0028 17 6 8.3085 -2.6148 0.0036 18 1 7.6388 -3.4620 0.0036 19 6 9.6727 -2.8143 0.0044 20 7 10.4882 -1.7825 0.0039 21 14 10.3627 -4.5503 0.0061 22 1 9.8955 -5.2698 -1.2061 23 1 11.8467 -4.4931 0.0061 24 1 9.8945 -5.2678 1.2190 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3635 0.5139 -0.8900 28 1 0.2171 2.2881 0.0005 29 1 0.1072 4.7614 0.0028 30 1 1.2584 6.9081 0.0012 31 1 3.7132 7.0212 -0.0029 32 1 5.0568 4.9894 -0.0026 33 1 5.1736 2.5161 -0.0112 34 1 3.7416 -0.7659 0.0024 35 1 6.0009 0.6754 -0.8892 36 1 6.0015 0.6766 0.8907 37 1 5.8799 -1.7996 0.8933 38 1 5.8795 -1.8017 -0.8866 39 1 8.0952 -0.6878 -0.8877 40 1 8.0950 -0.6860 0.8923 41 1 11.4481 -1.9230 0.0040 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:11 Heat of formation + Delta-G solvation = -8.748431 kcal Electronic energy + Delta-G solvation = -21121.394193 eV Core-core repulsion = 17965.626402 eV Total energy + Delta-G solvation = -3155.767791 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72843 -38.82234 -37.13761 -34.87381 -33.40171 -32.27802 -31.35644 -29.34516 -28.33879 -27.46747 -26.25582 -23.56795 -22.64687 -22.19573 -21.44263 -20.28851 -18.35693 -17.61138 -17.04364 -16.30587 -15.92232 -15.52509 -15.15657 -14.75386 -14.59227 -14.51359 -14.25440 -14.09850 -13.48495 -13.18070 -13.05936 -12.42049 -12.39651 -12.04705 -11.84370 -11.81232 -11.73177 -11.16094 -10.96914 -10.87193 -10.66777 -10.62017 -10.59243 -9.96617 -9.78175 -9.47095 -9.22970 -9.14631 -8.37598 -7.79271 -7.01545 -6.02746 -4.05501 0.64409 1.20867 2.13895 3.08810 3.09529 3.32025 3.36475 3.38725 3.68899 4.22284 4.44214 4.58135 4.84825 4.92958 4.96744 4.99231 5.03917 5.25726 5.29779 5.33183 5.33237 5.43411 5.65127 5.67388 5.73844 5.74538 5.95191 6.07637 6.13380 6.18997 6.30506 6.56401 6.58858 6.59869 6.66081 6.77126 6.98450 7.02268 7.12549 7.58093 7.61913 7.74931 7.95888 7.98551 8.38075 9.00778 9.58719 11.08569 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021376 B = 0.003071 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.538270 B = 9114.181388 C =10392.666085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.087 3.913 4 C -0.178 4.178 5 C -0.066 4.066 6 C -0.101 4.101 7 C -0.137 4.137 8 C -0.120 4.120 9 C -0.111 4.111 10 C -0.020 4.020 11 C -0.193 4.193 12 C 0.219 3.781 13 N -0.735 5.735 14 C 0.120 3.880 15 C -0.120 4.120 16 C 0.025 3.975 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.130 0.870 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.403 0.597 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.997 12.218 -0.011 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.041 3.959 4 C -0.198 4.198 5 C -0.068 4.068 6 C -0.119 4.119 7 C -0.155 4.155 8 C -0.139 4.139 9 C -0.130 4.130 10 C -0.021 4.021 11 C -0.218 4.218 12 C 0.113 3.887 13 N -0.362 5.362 14 C -0.003 4.003 15 C -0.158 4.158 16 C -0.012 4.012 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.148 0.852 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.154 0.846 34 H 0.238 0.762 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.507 12.036 -0.011 23.778 hybrid contribution 0.042 -1.091 0.003 1.092 sum -20.465 10.945 -0.007 23.208 Atomic orbital electron populations 1.23017 0.78419 1.03816 1.01205 1.86001 1.21312 1.26820 1.89159 1.18370 0.90556 0.84797 1.02222 1.20751 0.99303 0.91140 1.08581 1.17631 0.92508 0.92843 1.03817 1.20837 0.98970 0.91791 1.00327 1.20675 0.94589 0.97500 1.02756 1.20745 0.93952 0.98236 1.00917 1.20967 0.99766 0.91488 1.00754 1.17768 0.92046 0.93339 0.98981 1.20265 0.99900 0.89293 1.12380 1.17010 0.86900 0.88337 0.96472 1.44988 1.06047 1.05143 1.80005 1.21650 0.77728 1.00170 1.00763 1.21847 1.00268 0.92713 1.00969 1.19021 0.87350 0.97364 0.97506 1.21178 0.91543 0.92441 1.50952 0.92718 1.25019 0.97218 0.96924 0.95244 1.69953 1.03146 1.29699 1.50592 0.86642 0.77809 0.84833 0.78623 1.20236 1.21247 1.20232 0.88305 0.92743 0.92733 0.85199 0.86424 0.86677 0.86515 0.85800 0.84620 0.76165 0.92376 0.92380 0.92757 0.92755 0.96336 0.96330 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.80 101.05 0.99 1.23 16 2 O -0.32 -3.96 9.68 -19.57 -0.19 -4.15 16 3 C 0.09 1.19 6.67 -39.43 -0.26 0.93 16 4 C -0.18 -2.15 8.73 -39.38 -0.34 -2.50 16 5 C -0.07 -0.86 5.74 -106.80 -0.61 -1.47 16 6 C -0.10 -1.10 9.76 -39.48 -0.39 -1.48 16 7 C -0.14 -1.40 9.95 -39.92 -0.40 -1.79 16 8 C -0.12 -1.29 9.95 -39.93 -0.40 -1.68 16 9 C -0.11 -1.36 9.77 -39.47 -0.39 -1.74 16 10 C -0.02 -0.28 5.74 -106.82 -0.61 -0.90 16 11 C -0.19 -2.83 9.00 -39.32 -0.35 -3.19 16 12 C 0.22 3.30 6.63 -84.00 -0.56 2.75 16 13 N -0.73 -11.42 5.72 -58.80 -0.34 -11.76 16 14 C 0.12 2.05 4.89 -4.04 -0.02 2.03 16 15 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 16 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 17 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 21 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.38 7.63 -51.93 -0.40 -0.02 16 27 H 0.05 0.38 7.63 -51.93 -0.40 -0.02 16 28 H 0.13 1.21 6.18 -52.49 -0.32 0.88 16 29 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 30 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.14 1.95 6.61 -52.49 -0.35 1.60 16 34 H 0.40 6.04 7.78 -40.82 -0.32 5.73 16 35 H 0.06 0.99 7.90 -51.93 -0.41 0.58 16 36 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -31.13 341.64 -9.64 -40.77 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.95 Total: 2.78 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -4.03 Total: -23.34 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.40 Total: -37.77 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.19 Total: -4.15 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.13 -9.64 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.019 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds