Wall clock time and date at job start Tue Mar 31 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48497 * 109.46960 * 270.00301 * 3 2 1 5 5 H 1.48508 * 109.46966 * 30.00095 * 3 2 1 6 6 H 1.48492 * 109.47120 * 149.99804 * 3 2 1 7 7 C 1.37879 * 119.99621 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00241 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.50199 * 300.08353 * 9 7 2 11 11 C 1.53119 * 109.50197 * 60.19595 * 9 7 2 12 12 C 1.53117 * 109.15954 * 177.59576 * 11 9 7 13 13 C 1.53035 * 109.27846 * 302.34297 * 12 11 9 14 14 N 1.46855 * 109.51925 * 59.18148 * 13 12 11 15 15 C 1.46903 * 110.99766 * 174.15954 * 14 13 12 16 16 C 1.50703 * 109.46921 * 294.20849 * 15 14 13 17 17 C 1.38551 * 125.49594 * 95.03130 * 16 15 14 18 18 C 1.38926 * 107.56931 * 179.97438 * 17 16 15 19 19 C 1.40796 * 132.96821 * 180.02562 * 18 17 16 20 20 C 1.36061 * 119.22718 * 180.02562 * 19 18 17 21 21 C 1.40475 * 119.59304 * 359.97438 * 20 19 18 22 22 C 1.34940 * 120.42716 * 359.97438 * 21 20 19 23 23 N 1.36536 * 120.66171 * 0.02562 * 22 21 20 24 24 N 1.31479 * 125.49956 * 274.97334 * 16 15 14 25 25 C 1.46845 * 111.19922 * 298.25517 * 14 13 12 26 26 H 0.97001 * 119.99780 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.52232 * 297.50419 * 11 9 7 28 28 H 1.08998 * 109.52224 * 57.69090 * 11 9 7 29 29 H 1.09002 * 109.50412 * 62.29088 * 12 11 9 30 30 H 1.09004 * 109.50029 * 182.40882 * 12 11 9 31 31 H 1.08994 * 109.46520 * 299.16877 * 13 12 11 32 32 H 1.09005 * 109.46511 * 179.19559 * 13 12 11 33 33 H 1.08994 * 109.47145 * 174.20919 * 15 14 13 34 34 H 1.09000 * 109.46959 * 54.20591 * 15 14 13 35 35 H 1.08005 * 126.21250 * 0.02562 * 17 16 15 36 36 H 1.08002 * 120.38844 * 0.02562 * 19 18 17 37 37 H 1.07997 * 120.20873 * 179.97438 * 20 19 18 38 38 H 1.08000 * 119.78748 * 179.72936 * 21 20 19 39 39 H 1.08000 * 119.66769 * 179.97438 * 22 21 20 40 40 H 1.08996 * 109.46323 * 181.76100 * 25 14 13 41 41 H 1.08998 * 109.45974 * 301.73143 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6233 -2.5570 0.8887 11 6 0.3736 -2.5829 -1.2526 12 6 -0.3421 -3.9364 -1.2753 13 6 0.6979 -5.0585 -1.2390 14 7 1.5110 -4.9348 -0.0224 15 6 2.4281 -6.0740 0.1158 16 6 1.6330 -7.3351 0.3362 17 6 1.2512 -8.2284 -0.6517 18 6 0.5381 -9.2513 -0.0393 19 6 -0.0844 -10.4147 -0.5305 20 6 -0.7225 -11.2444 0.3388 21 6 -0.7490 -10.9278 1.7072 22 6 -0.1464 -9.8092 2.1616 23 7 0.4978 -8.9669 1.3016 24 7 1.1906 -7.7657 1.4970 25 6 2.2447 -3.6630 -0.0012 26 1 -0.4850 0.8401 0.0004 27 1 -0.3644 -1.7808 -1.2346 28 1 0.9970 -2.4856 -2.1414 29 1 -0.9953 -4.0172 -0.4064 30 1 -0.9352 -4.0192 -2.1861 31 1 1.3419 -4.9852 -2.1153 32 1 0.1911 -6.0236 -1.2406 33 1 3.0885 -5.9076 0.9668 34 1 3.0232 -6.1736 -0.7920 35 1 1.4692 -8.1450 -1.7063 36 1 -0.0558 -10.6459 -1.5851 37 1 -1.2057 -12.1408 -0.0208 38 1 -1.2584 -11.5819 2.3994 39 1 -0.1747 -9.5775 3.2161 40 1 2.8614 -3.6144 0.8962 41 1 2.8815 -3.5963 -0.8833 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237447111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:51 Heat of formation + Delta-G solvation = 103.402725 kcal Electronic energy + Delta-G solvation = -21933.254188 eV Core-core repulsion = 18814.642387 eV Total energy + Delta-G solvation = -3118.611801 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.154 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.97762 -38.38097 -37.13550 -33.93493 -32.91376 -31.91961 -30.53721 -29.79274 -28.49794 -26.42136 -24.88983 -23.54888 -22.64155 -21.92710 -21.32434 -19.98728 -18.54017 -17.36931 -16.69160 -16.36206 -15.90519 -15.66793 -14.98640 -14.69039 -14.49187 -14.02810 -13.89377 -13.57577 -13.16598 -12.73820 -12.44322 -12.28682 -12.02026 -11.92390 -11.72126 -11.65823 -11.24640 -10.91225 -10.67567 -10.66759 -10.53812 -10.44746 -10.03035 -9.78831 -9.42706 -9.29538 -8.95992 -8.65506 -8.26051 -7.68294 -7.57094 -5.92940 -3.99056 0.65667 1.05199 2.25434 2.72148 3.28916 3.33831 3.40543 3.43742 4.17314 4.41487 4.47926 4.59766 4.70248 4.79021 4.87834 5.23615 5.32423 5.37129 5.56704 5.62688 5.68640 5.78396 5.85819 5.91128 5.92553 6.02381 6.15266 6.31824 6.32957 6.44655 6.56608 6.60278 6.78316 6.80500 6.88708 7.01511 7.27564 7.43549 7.66216 7.71392 7.79330 7.85209 8.14049 8.22725 8.52572 9.05102 9.64916 11.13101 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.038545 B = 0.003236 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.257603 B = 8649.883376 C = 8739.718285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.061 3.939 14 N -0.531 5.531 15 C 0.128 3.872 16 C 0.128 3.872 17 C -0.278 4.278 18 C 0.096 3.904 19 C -0.114 4.114 20 C -0.089 4.089 21 C -0.175 4.175 22 C 0.118 3.882 23 N -0.279 5.279 24 N -0.297 5.297 25 C 0.069 3.931 26 H 0.259 0.741 27 H 0.090 0.910 28 H 0.030 0.970 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.024 0.976 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.061 0.939 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 -22.385 -0.824 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.067 4.067 14 N -0.256 5.256 15 C -0.002 4.002 16 C -0.031 4.031 17 C -0.307 4.307 18 C -0.022 4.022 19 C -0.134 4.134 20 C -0.112 4.112 21 C -0.198 4.198 22 C -0.008 4.008 23 N -0.046 5.046 24 N -0.121 5.121 25 C -0.058 4.058 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.168 0.832 39 H 0.183 0.817 40 H 0.080 0.920 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -1.444 -21.885 0.868 21.949 hybrid contribution 0.911 0.665 -1.550 1.917 sum -0.532 -21.220 -0.682 21.237 Atomic orbital electron populations 1.69901 1.05843 1.26259 1.50705 1.24938 0.94821 0.98935 0.95188 0.86626 0.79893 0.83666 0.77976 1.20814 1.21293 1.19964 1.21149 0.92830 0.90638 1.50633 0.92796 1.18661 0.92624 0.90157 0.94910 0.94736 1.21652 1.00014 0.94686 0.98457 1.21665 0.97224 0.96482 1.00064 1.22097 0.95702 0.99067 0.89801 1.61941 1.23776 1.01498 1.38406 1.20459 0.92482 0.85805 1.01413 1.22190 0.95214 0.95733 0.89958 1.21259 1.11863 0.97065 1.00545 1.19583 1.00710 0.97197 0.84746 1.20590 0.99185 0.92571 1.01013 1.21093 0.97766 0.99434 0.92883 1.20761 1.04319 0.97740 0.96934 1.21485 0.93760 0.89348 0.96172 1.46348 1.35382 1.16770 1.06105 1.77981 1.17292 0.94712 1.22105 1.22340 0.96486 0.87967 0.98959 0.93102 0.89166 0.95113 0.92298 0.93594 0.95756 0.92082 0.89335 0.92952 0.83086 0.83855 0.84505 0.83154 0.81721 0.92047 0.96024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 11.36 55.43 0.63 -25.10 16 2 C 0.06 1.75 5.31 -17.82 -0.09 1.65 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.25 8.56 -34.44 -0.29 -14.54 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 10 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.11 -2.67 5.03 -26.61 -0.13 -2.80 16 12 C -0.12 -2.40 6.09 -26.65 -0.16 -2.56 16 13 C 0.06 1.14 5.29 -3.83 -0.02 1.12 16 14 N -0.53 -10.40 4.65 -236.11 -1.10 -11.50 16 15 C 0.13 2.11 5.51 -4.97 -0.03 2.08 16 16 C 0.13 2.09 5.88 -82.63 -0.49 1.61 16 17 C -0.28 -3.98 9.65 -39.21 -0.38 -4.36 16 18 C 0.10 1.28 6.81 -84.27 -0.57 0.70 16 19 C -0.11 -1.10 10.11 -39.40 -0.40 -1.50 16 20 C -0.09 -0.68 10.07 -39.52 -0.40 -1.07 16 21 C -0.18 -1.34 9.98 -39.91 -0.40 -1.74 16 22 C 0.12 1.23 11.19 -16.63 -0.19 1.04 16 23 N -0.28 -4.01 3.90 -10.71 -0.04 -4.06 16 24 N -0.30 -5.13 12.66 33.51 0.42 -4.71 16 25 C 0.07 1.50 4.68 -3.84 -0.02 1.48 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 27 H 0.09 2.44 6.16 -51.93 -0.32 2.12 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 1.07 6.20 -51.93 -0.32 0.75 16 33 H 0.09 1.42 7.99 -51.93 -0.41 1.01 16 34 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.15 1.85 8.06 -52.48 -0.42 1.43 16 36 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.06 1.31 8.01 -51.93 -0.42 0.90 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 331.53 15.07 5.00 5.00 Total: -1.00 -32.01 331.53 -9.97 -41.99 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.09 Total: -0.40 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -3.78 Total: -17.67 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.09 Total: -45.37 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.01 -9.97 -41.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237447111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.390 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds