Wall clock time and date at job start Tue Mar 31 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 119.99814 * 2 1 4 4 H 1.48508 * 109.47176 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47270 * 300.00054 * 3 2 1 6 6 H 1.48502 * 109.47042 * 60.00321 * 3 2 1 7 7 C 1.37875 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00215 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00088 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.53442 * 59.89871 * 9 7 2 11 11 C 1.53115 * 109.50011 * 299.80262 * 9 7 2 12 12 C 1.53121 * 109.15917 * 182.40676 * 11 9 7 13 13 C 1.53033 * 109.27875 * 57.65214 * 12 11 9 14 14 N 1.46843 * 109.52470 * 300.81966 * 13 12 11 15 15 C 1.46901 * 111.00057 * 185.83691 * 14 13 12 16 16 C 1.50704 * 109.47003 * 45.79354 * 15 14 13 17 17 C 1.38552 * 125.49548 * 94.99272 * 16 15 14 18 18 C 1.38927 * 107.56543 * 179.97438 * 17 16 15 19 19 C 1.40797 * 132.96174 * 180.02562 * 18 17 16 20 20 C 1.36069 * 119.22279 * 179.97438 * 19 18 17 21 21 C 1.40476 * 119.58988 * 359.76191 * 20 19 18 22 22 C 1.34927 * 120.43190 * 0.49907 * 21 20 19 23 23 N 1.36538 * 120.65633 * 359.48927 * 22 21 20 24 24 N 1.31480 * 125.49958 * 274.96101 * 16 15 14 25 25 C 1.46852 * 111.19575 * 61.74727 * 14 13 12 26 26 H 0.96996 * 120.00536 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.52101 * 302.30806 * 11 9 7 28 28 H 1.08999 * 109.52795 * 62.43531 * 11 9 7 29 29 H 1.09005 * 109.50071 * 177.59567 * 12 11 9 30 30 H 1.09001 * 109.49824 * 297.67172 * 12 11 9 31 31 H 1.09007 * 109.46275 * 180.80678 * 13 12 11 32 32 H 1.09000 * 109.46109 * 60.84374 * 13 12 11 33 33 H 1.08998 * 109.47647 * 285.79640 * 15 14 13 34 34 H 1.09001 * 109.46977 * 165.78907 * 15 14 13 35 35 H 1.07997 * 126.21645 * 0.02562 * 17 16 15 36 36 H 1.08000 * 120.38981 * 0.02562 * 19 18 17 37 37 H 1.08005 * 120.20106 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.78039 * 180.26567 * 21 20 19 39 39 H 1.08002 * 119.67320 * 179.77714 * 22 21 20 40 40 H 1.08995 * 109.46640 * 58.27405 * 25 14 13 41 41 H 1.08997 * 109.45886 * 178.24423 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6230 -2.5567 -0.8907 11 6 0.3738 -2.5840 1.2503 12 6 -0.3418 -3.9376 1.2718 13 6 0.6983 -5.0596 1.2345 14 7 1.5113 -4.9348 0.0180 15 6 2.4285 -6.0738 -0.1213 16 6 1.6826 -7.3553 0.1479 17 6 1.1054 -8.1676 -0.8147 18 6 0.5195 -9.2433 -0.1592 19 6 -0.1974 -10.3676 -0.6113 20 6 -0.6565 -11.2717 0.2961 21 6 -0.4040 -11.0715 1.6634 22 6 0.2803 -9.9859 2.0802 23 7 0.7474 -9.0701 1.1818 24 7 1.4750 -7.8832 1.3341 25 6 2.2450 -3.6629 -0.0021 26 1 -0.4851 0.8400 -0.0004 27 1 0.9973 -2.4875 2.1392 28 1 -0.3635 -1.7814 1.2337 29 1 -0.9349 -4.0212 2.1825 30 1 -0.9954 -4.0174 0.4032 31 1 0.1915 -6.0247 1.2352 32 1 1.3423 -4.9871 2.1109 33 1 3.2454 -5.9720 0.5932 34 1 2.8317 -6.0939 -1.1338 35 1 1.1108 -7.9962 -1.8810 36 1 -0.3802 -10.5111 -1.6661 37 1 -1.2079 -12.1400 -0.0333 38 1 -0.7632 -11.7894 2.3859 39 1 0.4644 -9.8424 3.1347 40 1 2.8818 -3.5969 0.8800 41 1 2.8616 -3.6135 -0.8995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237447112.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:54 Heat of formation + Delta-G solvation = 107.091763 kcal Electronic energy + Delta-G solvation = -22015.187741 eV Core-core repulsion = 18896.735909 eV Total energy + Delta-G solvation = -3118.451832 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.154 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.03252 -38.44117 -37.10801 -33.93170 -32.95218 -31.88654 -30.61559 -29.66035 -28.59859 -26.39501 -24.89029 -23.62004 -22.52560 -21.91441 -21.50395 -19.86820 -18.52161 -17.38086 -16.74847 -16.36685 -15.91102 -15.78637 -14.90483 -14.75531 -14.45677 -14.15073 -13.81594 -13.49526 -13.10341 -12.69688 -12.47903 -12.35717 -11.98308 -11.86828 -11.70055 -11.64163 -11.35882 -10.92882 -10.63667 -10.62483 -10.57154 -10.54686 -10.03533 -9.78191 -9.42366 -9.21572 -8.99805 -8.64192 -8.25624 -7.66885 -7.58320 -5.93069 -3.99091 0.63713 1.01309 2.21253 2.67860 3.27733 3.32995 3.40920 3.44723 4.13886 4.42131 4.46832 4.57075 4.73011 4.74703 4.87124 5.23498 5.24581 5.37081 5.55241 5.65850 5.76049 5.80243 5.87379 5.93914 5.99188 6.01988 6.19209 6.30526 6.36409 6.46688 6.58014 6.60471 6.80690 6.81872 6.87000 7.01750 7.28303 7.44491 7.60758 7.71453 7.79357 7.84841 8.13564 8.22672 8.52793 9.05210 9.64961 11.13012 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.042706 B = 0.003257 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.485565 B = 8594.068141 C = 8774.249778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.064 3.936 14 N -0.530 5.530 15 C 0.128 3.872 16 C 0.121 3.879 17 C -0.262 4.262 18 C 0.094 3.906 19 C -0.110 4.110 20 C -0.091 4.091 21 C -0.173 4.173 22 C 0.115 3.885 23 N -0.277 5.277 24 N -0.314 5.314 25 C 0.068 3.932 26 H 0.258 0.742 27 H 0.029 0.971 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.024 0.976 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.151 0.849 39 H 0.164 0.836 40 H 0.021 0.979 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.017 -22.529 1.221 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.064 4.064 14 N -0.256 5.256 15 C -0.001 4.001 16 C -0.036 4.036 17 C -0.291 4.291 18 C -0.025 4.025 19 C -0.130 4.130 20 C -0.114 4.114 21 C -0.195 4.195 22 C -0.011 4.011 23 N -0.044 5.044 24 N -0.139 5.139 25 C -0.059 4.059 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.174 0.826 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.168 0.832 39 H 0.182 0.818 40 H 0.039 0.961 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.192 -22.140 2.093 22.270 hybrid contribution 0.771 0.729 -0.016 1.061 sum -0.421 -21.411 2.077 21.516 Atomic orbital electron populations 1.69905 1.05839 1.26156 1.50804 1.24937 0.94821 0.98947 0.95198 0.86574 0.80136 0.83993 0.77490 1.19850 1.21069 1.21151 1.21188 0.92870 0.90618 1.50490 0.92741 1.18665 0.92602 0.90160 0.94903 0.94659 1.21652 1.00015 0.94663 0.98481 1.21675 0.97251 0.96534 0.99967 1.22085 0.95566 0.98800 0.89926 1.62213 1.23429 1.01497 1.38431 1.20623 0.92853 0.84743 1.01890 1.22181 0.95509 0.95948 0.89919 1.21265 1.10782 0.96368 1.00709 1.19620 1.00673 0.97658 0.84502 1.20614 0.98833 0.92458 1.01102 1.21100 0.98509 0.99138 0.92623 1.20763 1.03262 0.98285 0.97167 1.21462 0.96207 0.88019 0.95404 1.46267 1.35790 1.16717 1.05643 1.77966 1.19080 0.95103 1.21734 1.22359 0.96519 0.88019 0.98992 0.93155 0.95193 0.89153 0.93790 0.92266 0.92180 0.95804 0.93596 0.88700 0.82638 0.83725 0.84463 0.83160 0.81823 0.96054 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 11.36 55.43 0.63 -25.07 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.23 8.56 -34.44 -0.29 -14.53 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 10 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 11 C -0.11 -2.72 5.03 -26.61 -0.13 -2.85 16 12 C -0.12 -2.48 6.09 -26.65 -0.16 -2.65 16 13 C 0.06 1.28 4.87 -3.84 -0.02 1.27 16 14 N -0.53 -10.45 4.80 -236.11 -1.13 -11.59 16 15 C 0.13 2.12 5.82 -4.97 -0.03 2.09 16 16 C 0.12 1.97 5.13 -82.62 -0.42 1.54 16 17 C -0.26 -3.78 10.83 -39.21 -0.42 -4.21 16 18 C 0.09 1.24 6.81 -84.28 -0.57 0.66 16 19 C -0.11 -1.05 10.11 -39.39 -0.40 -1.45 16 20 C -0.09 -0.68 10.07 -39.52 -0.40 -1.08 16 21 C -0.17 -1.28 9.98 -39.91 -0.40 -1.68 16 22 C 0.11 1.16 11.19 -16.63 -0.19 0.97 16 23 N -0.28 -3.88 3.90 -10.71 -0.04 -3.92 16 24 N -0.31 -5.21 11.36 33.52 0.38 -4.83 16 25 C 0.07 1.48 4.65 -3.83 -0.02 1.46 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 2.47 6.16 -51.93 -0.32 2.15 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.19 5.79 -51.93 -0.30 0.88 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 38 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 1.30 8.12 -51.93 -0.42 0.88 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -31.78 330.48 -10.04 -41.83 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.08 Total: -0.28 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -3.76 Total: -17.58 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.16 Total: -45.41 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.78 -10.04 -41.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237447112.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.918 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds