Wall clock time and date at job start Tue Mar 31 2020 06:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00066 * 2 1 4 4 H 1.48500 * 109.47619 * 270.00108 * 3 2 1 5 5 H 1.48501 * 109.47142 * 30.00465 * 3 2 1 6 6 H 1.48509 * 109.46851 * 149.99955 * 3 2 1 7 7 C 1.37878 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00549 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99512 * 359.97438 * 7 2 1 10 10 C 1.53124 * 109.52372 * 180.02562 * 9 7 2 11 11 C 1.53037 * 109.28148 * 182.37855 * 10 9 7 12 12 N 1.46844 * 109.52152 * 59.17731 * 11 10 9 13 13 C 1.46906 * 110.99887 * 174.16043 * 12 11 10 14 14 C 1.50701 * 109.46965 * 170.00048 * 13 12 11 15 15 C 1.38547 * 125.49693 * 94.72379 * 14 13 12 16 16 C 1.38928 * 107.56773 * 179.83318 * 15 14 13 17 17 C 1.40795 * 132.96651 * 180.10517 * 16 15 14 18 18 C 1.36060 * 119.22830 * 180.34286 * 17 16 15 19 19 C 1.40469 * 119.59086 * 0.02562 * 18 17 16 20 20 C 1.34937 * 120.43279 * 359.97438 * 19 18 17 21 21 N 1.36532 * 120.65794 * 0.02562 * 20 19 18 22 22 N 1.31490 * 125.49709 * 275.02262 * 14 13 12 23 23 C 1.46850 * 111.19991 * 298.25708 * 12 11 10 24 24 C 1.53032 * 109.52098 * 61.74469 * 23 12 11 25 25 H 0.96999 * 119.99924 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.52672 * 300.12896 * 9 7 2 27 27 H 1.08997 * 109.50392 * 62.43277 * 10 9 7 28 28 H 1.09008 * 109.53016 * 302.33838 * 10 9 7 29 29 H 1.08995 * 109.46089 * 299.16330 * 11 10 9 30 30 H 1.09000 * 109.45256 * 179.18504 * 11 10 9 31 31 H 1.08993 * 109.47164 * 289.99991 * 13 12 11 32 32 H 1.08996 * 109.46920 * 50.00025 * 13 12 11 33 33 H 1.07996 * 126.21673 * 359.95839 * 15 14 13 34 34 H 1.08004 * 120.38273 * 0.32150 * 17 16 15 35 35 H 1.08005 * 120.20238 * 179.97438 * 18 17 16 36 36 H 1.07994 * 119.78348 * 180.02562 * 19 18 17 37 37 H 1.07996 * 119.66963 * 180.02562 * 20 19 18 38 38 H 1.09005 * 109.46314 * 181.76064 * 23 12 11 39 39 H 1.08998 * 109.46244 * 301.72632 * 23 12 11 40 40 H 1.09004 * 109.50441 * 180.87586 * 24 23 12 41 41 H 1.08999 * 109.50499 * 60.76414 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2449 -3.6639 -0.0005 11 6 1.4750 -4.9852 -0.0605 12 7 0.6532 -5.0195 -1.2769 13 6 0.0068 -6.3287 -1.4388 14 6 -1.0111 -6.2526 -2.5475 15 6 -0.7873 -6.5987 -3.8703 16 6 -1.9721 -6.3890 -4.5648 17 6 -2.3383 -6.5652 -5.9129 18 6 -3.6052 -6.2584 -6.3027 19 6 -4.5233 -5.7722 -5.3572 20 6 -4.1562 -5.6092 -4.0691 21 7 -2.8886 -5.9127 -3.6627 22 7 -2.2534 -5.8419 -2.4167 23 6 -0.3406 -3.9383 -1.2771 24 6 0.3751 -2.5859 -1.2535 25 1 -0.4850 0.8400 -0.0004 26 1 0.6226 -2.5570 0.8882 27 1 2.8428 -3.6321 0.9102 28 1 2.8995 -3.5844 -0.8686 29 1 0.8315 -5.0705 0.8151 30 1 2.1804 -5.8160 -0.0752 31 1 0.7592 -7.0771 -1.6871 32 1 -0.4890 -6.6065 -0.5088 33 1 0.1392 -6.9668 -4.2855 34 1 -1.6217 -6.9391 -6.6292 35 1 -3.9029 -6.3870 -7.3329 36 1 -5.5299 -5.5281 -5.6632 37 1 -4.8722 -5.2350 -3.3524 38 1 -0.9540 -4.0090 -2.1754 39 1 -0.9756 -4.0286 -0.3959 40 1 -0.3628 -1.7838 -1.2379 41 1 0.9997 -2.4891 -2.1415 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237447167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:16 Heat of formation + Delta-G solvation = 107.440333 kcal Electronic energy + Delta-G solvation = -22122.687571 eV Core-core repulsion = 19004.250854 eV Total energy + Delta-G solvation = -3118.436717 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.154 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97511 -38.43492 -37.07072 -34.04260 -32.92060 -31.70828 -30.34254 -29.66912 -28.57253 -26.88900 -24.65912 -23.50013 -22.29559 -22.03842 -21.49544 -19.89751 -18.48664 -17.32149 -16.67565 -16.35792 -15.86821 -15.78493 -14.92556 -14.76319 -14.37326 -14.25051 -13.85708 -13.47515 -12.92825 -12.69740 -12.42871 -12.37486 -11.93542 -11.83926 -11.69767 -11.66183 -11.18742 -10.89894 -10.72283 -10.54448 -10.52515 -10.33736 -10.12501 -9.91049 -9.36222 -9.22772 -8.87644 -8.60458 -8.22839 -7.70138 -7.56905 -5.90628 -3.96064 0.70098 1.07749 2.27326 2.72141 3.33664 3.35385 3.41685 3.45028 4.19993 4.47218 4.50207 4.61141 4.68935 4.80322 4.92131 5.24392 5.29215 5.39346 5.59085 5.66505 5.73694 5.79987 5.84376 5.94591 5.98284 6.07299 6.19532 6.32549 6.39158 6.43138 6.60797 6.71161 6.75495 6.92277 6.93952 7.14762 7.22865 7.51534 7.64925 7.69191 7.74578 7.89641 8.12706 8.24012 8.55322 9.07849 9.67926 11.15489 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.003974 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.039531 B = 7044.567442 C = 7873.425556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.105 4.105 11 C 0.061 3.939 12 N -0.528 5.528 13 C 0.129 3.871 14 C 0.119 3.881 15 C -0.264 4.264 16 C 0.094 3.906 17 C -0.112 4.112 18 C -0.090 4.090 19 C -0.173 4.173 20 C 0.116 3.884 21 N -0.276 5.276 22 N -0.309 5.309 23 C 0.059 3.941 24 C -0.102 4.102 25 H 0.258 0.742 26 H 0.020 0.980 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.026 0.974 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.155 0.845 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.058 0.942 39 H 0.023 0.977 40 H 0.090 0.910 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.486 -15.194 -10.961 20.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.067 4.067 12 N -0.254 5.254 13 C -0.001 4.001 14 C -0.038 4.038 15 C -0.293 4.293 16 C -0.024 4.024 17 C -0.132 4.132 18 C -0.112 4.112 19 C -0.195 4.195 20 C -0.009 4.009 21 N -0.043 5.043 22 N -0.134 5.134 23 C -0.069 4.069 24 C -0.141 4.141 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.172 0.828 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.169 0.831 37 H 0.183 0.817 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.108 0.892 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.135 -14.541 -10.385 19.633 hybrid contribution 0.331 0.590 0.024 0.677 sum -7.804 -13.951 -10.361 19.049 Atomic orbital electron populations 1.69893 1.05884 1.26193 1.51153 1.24975 0.94811 0.98984 0.95283 0.86643 0.79885 0.83722 0.78022 1.20771 1.21370 1.19968 1.21217 0.92863 0.90698 1.49993 0.92738 1.18692 0.92698 0.91750 0.93980 1.21672 0.98672 0.93635 1.00342 1.22144 0.95737 0.99519 0.89269 1.62208 1.23438 1.01194 1.38575 1.20586 0.92390 0.94096 0.92990 1.22082 0.92015 0.94021 0.95647 1.21211 0.98116 1.17255 0.92719 1.19619 0.91034 1.00399 0.91337 1.20593 0.97451 1.02499 0.92628 1.21095 0.92900 0.97154 1.00099 1.20764 1.01704 1.05595 0.91447 1.21489 0.83973 0.98420 0.97015 1.46259 1.08679 1.41411 1.07931 1.77998 1.08714 1.29551 0.97107 1.22335 0.92798 0.92531 0.99202 1.21648 1.00057 0.93115 0.99229 0.93180 0.96168 0.93056 0.92414 0.95591 0.92164 0.88960 0.93642 0.82759 0.83777 0.84472 0.83125 0.81725 0.92351 0.95882 0.89169 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 11.37 55.43 0.63 -25.67 16 2 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.42 8.56 -34.44 -0.29 -14.72 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 10 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 11 C 0.06 1.13 5.42 -3.84 -0.02 1.11 16 12 N -0.53 -10.09 4.80 -236.12 -1.13 -11.23 16 13 C 0.13 2.05 5.82 -4.97 -0.03 2.02 16 14 C 0.12 1.99 5.13 -82.62 -0.42 1.56 16 15 C -0.26 -3.90 10.83 -39.21 -0.42 -4.33 16 16 C 0.09 1.32 6.81 -84.27 -0.57 0.74 16 17 C -0.11 -1.14 10.11 -39.40 -0.40 -1.54 16 18 C -0.09 -0.74 10.07 -39.52 -0.40 -1.14 16 19 C -0.17 -1.45 9.98 -39.91 -0.40 -1.85 16 20 C 0.12 1.31 11.19 -16.63 -0.19 1.13 16 21 N -0.28 -4.15 3.90 -10.71 -0.04 -4.19 16 22 N -0.31 -5.45 11.35 33.52 0.38 -5.07 16 23 C 0.06 1.29 4.87 -3.83 -0.02 1.27 16 24 C -0.10 -2.59 5.12 -26.65 -0.14 -2.73 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 33 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 36 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.06 1.30 5.79 -51.93 -0.30 1.00 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 2.54 6.18 -51.93 -0.32 2.22 16 41 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -32.69 330.50 -10.02 -42.71 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.08 Total: -0.09 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -3.74 Total: -18.24 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.16 Total: -46.15 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.69 -10.02 -42.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237447167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.152 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds