Wall clock time and date at job start Tue Mar 31 2020 06:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39461 * 119.73663 * 311.54024 * 3 2 1 5 5 C 1.38490 * 119.05296 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.74901 * 179.73286 * 5 4 3 7 7 N 1.46891 * 109.47272 * 84.13514 * 6 5 4 8 8 C 1.46898 * 111.00032 * 199.96119 * 7 6 5 9 9 C 1.50703 * 109.47168 * 178.63290 * 8 7 6 10 10 H 1.07993 * 120.00047 * 354.01056 * 9 8 7 11 11 C 1.37882 * 120.00082 * 174.01535 * 9 8 7 12 12 N 1.31517 * 119.99744 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00161 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47058 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47051 * 119.99949 * 13 11 9 16 16 H 1.48494 * 109.47358 * 239.99543 * 13 11 9 17 17 C 1.46901 * 111.00108 * 76.00315 * 7 6 5 18 18 C 1.54262 * 110.03409 * 217.89251 * 17 7 6 19 19 C 1.54971 * 104.15795 * 217.13712 * 18 17 7 20 20 C 1.54891 * 102.77829 * 37.88955 * 19 18 17 21 21 C 1.53884 * 110.02732 * 100.67345 * 17 7 6 22 22 C 1.38701 * 118.50655 * 0.02562 * 5 4 3 23 23 C 1.38467 * 119.37738 * 0.02562 * 22 5 4 24 24 N 1.31582 * 120.92148 * 359.97095 * 23 22 5 25 25 H 1.08000 * 120.47471 * 359.97438 * 4 3 2 26 26 H 1.09003 * 109.46944 * 204.13717 * 6 5 4 27 27 H 1.09000 * 109.46704 * 324.13145 * 6 5 4 28 28 H 1.09003 * 109.47219 * 298.63064 * 8 7 6 29 29 H 1.09003 * 109.47420 * 58.62854 * 8 7 6 30 30 H 0.97000 * 120.00168 * 180.02562 * 12 11 9 31 31 H 1.08996 * 110.01553 * 339.29059 * 17 7 6 32 32 H 1.08997 * 110.48670 * 335.78290 * 18 17 7 33 33 H 1.08995 * 110.48931 * 98.42877 * 18 17 7 34 34 H 1.08996 * 110.72120 * 279.56976 * 19 18 17 35 35 H 1.09006 * 110.92086 * 156.29194 * 19 18 17 36 36 H 1.09001 * 110.48305 * 203.40362 * 20 19 18 37 37 H 1.09003 * 110.59717 * 80.81670 * 20 19 18 38 38 H 1.08999 * 110.03052 * 238.56841 * 21 17 7 39 39 H 1.08999 * 110.03568 * 359.95416 * 21 17 7 40 40 H 1.07997 * 120.31377 * 179.97438 * 22 5 4 41 41 H 1.08011 * 119.54066 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2601 -0.8021 0.9064 5 6 4.6449 -0.7901 0.8944 6 6 5.4312 -1.6379 1.8608 7 7 5.5671 -2.9974 1.3213 8 6 5.8896 -3.9566 2.3861 9 6 5.9878 -5.3421 1.8013 10 1 5.7326 -5.5103 0.7656 11 6 6.4034 -6.3949 2.5888 12 7 6.7145 -6.1898 3.8500 13 14 6.5244 -8.1123 1.8642 14 1 6.1222 -8.0761 0.4352 15 1 7.9238 -8.5974 1.9719 16 1 5.6243 -9.0285 2.6093 17 6 6.5724 -3.0411 0.2511 18 6 6.1144 -4.0021 -0.8653 19 6 7.4217 -4.6911 -1.3322 20 6 8.2011 -4.8808 -0.0072 21 6 7.8987 -3.5992 0.7964 22 6 5.2920 0.0244 -0.0231 23 6 4.5415 0.7967 -0.8935 24 7 3.2264 0.7671 -0.8617 25 1 2.7239 -1.4236 1.6082 26 1 6.4205 -1.2032 2.0038 27 1 4.9098 -1.6769 2.8172 28 1 6.8420 -3.6864 2.8423 29 1 5.1055 -3.9364 3.1431 30 1 7.0073 -6.9304 4.4039 31 1 6.7272 -2.0420 -0.1563 32 1 5.4148 -4.7390 -0.4710 33 1 5.6616 -3.4456 -1.6858 34 1 7.9740 -4.0470 -2.0164 35 1 7.2096 -5.6541 -1.7968 36 1 9.2701 -4.9656 -0.2022 37 1 7.8408 -5.7600 0.5271 38 1 8.6973 -2.8713 0.6527 39 1 7.7966 -3.8368 1.8553 40 1 6.3709 0.0567 -0.0576 41 1 5.0426 1.4317 -1.6093 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237464063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:32 Heat of formation + Delta-G solvation = 87.788374 kcal Electronic energy + Delta-G solvation = -22570.119967 eV Core-core repulsion = 19450.831077 eV Total energy + Delta-G solvation = -3119.288890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.154 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49142 -38.78362 -36.58302 -34.95063 -33.12760 -32.04663 -31.65515 -28.21359 -27.51198 -27.24247 -24.84910 -24.39869 -22.51245 -21.94544 -19.95967 -18.80442 -18.11761 -16.75734 -16.67907 -16.07963 -15.40511 -15.24409 -14.69785 -14.65953 -14.40175 -13.84270 -13.50986 -13.24905 -13.13259 -12.90009 -12.77918 -12.58473 -12.16372 -11.93725 -11.68367 -11.28918 -10.99677 -10.93056 -10.70613 -10.52666 -10.32442 -10.24383 -10.04525 -9.87618 -9.69579 -9.45689 -9.29421 -9.19543 -8.87773 -8.45387 -7.33451 -6.11153 -4.07620 0.54613 1.15809 2.48950 2.79469 3.23712 3.33792 3.36274 3.47382 3.84761 4.34949 4.55301 4.63852 4.86313 4.94541 5.02342 5.17422 5.24487 5.39268 5.41936 5.53954 5.70421 5.72602 5.85409 5.94431 5.99445 6.23750 6.24458 6.31734 6.38573 6.46747 6.49797 6.61911 6.65750 6.78404 6.90267 6.92712 7.26733 7.30591 7.32668 7.51723 7.66795 7.83562 7.96393 8.06261 8.42779 8.98790 9.53101 11.00097 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019477 B = 0.004805 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.268513 B = 5825.425308 C = 6347.047217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.275 3.725 3 C 0.180 3.820 4 C -0.095 4.095 5 C -0.013 4.013 6 C 0.082 3.918 7 N -0.527 5.527 8 C 0.186 3.814 9 C -0.503 4.503 10 H 0.081 0.919 11 C 0.058 3.942 12 N -0.898 5.898 13 Si 0.882 3.118 14 H -0.270 1.270 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.096 3.904 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.115 4.115 21 C -0.156 4.156 22 C -0.141 4.141 23 C 0.104 3.896 24 N -0.461 5.461 25 H 0.147 0.853 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.011 0.989 29 H 0.027 0.973 30 H 0.260 0.740 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.037 0.963 37 H 0.091 0.909 38 H 0.031 0.969 39 H 0.111 0.889 40 H 0.140 0.860 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.874 10.491 -6.460 12.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.078 5.078 2 C -0.042 4.042 3 C 0.043 3.957 4 C -0.118 4.118 5 C -0.021 4.021 6 C -0.046 4.046 7 N -0.251 5.251 8 C 0.062 3.938 9 C -0.542 4.542 10 H 0.099 0.901 11 C -0.143 4.143 12 N -0.537 5.537 13 Si 0.710 3.290 14 H -0.194 1.194 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.013 4.013 18 C -0.148 4.148 19 C -0.161 4.161 20 C -0.152 4.152 21 C -0.194 4.194 22 C -0.163 4.163 23 C -0.055 4.055 24 N -0.172 5.172 25 H 0.165 0.835 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.028 0.972 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.109 0.891 38 H 0.050 0.950 39 H 0.129 0.871 40 H 0.158 0.842 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.752 10.773 -7.063 12.904 hybrid contribution 1.910 -1.283 0.550 2.366 sum 1.158 9.490 -6.513 11.568 Atomic orbital electron populations 1.81222 1.11646 1.07565 1.07372 1.25052 0.91773 0.93694 0.93730 1.16301 0.85901 0.97579 0.95967 1.21943 0.94547 0.97029 0.98243 1.20428 0.93246 0.93362 0.95089 1.21111 0.97502 0.90600 0.95414 1.62434 1.47006 1.02390 1.13279 1.19991 0.95172 0.90025 0.88647 1.21481 1.43156 0.91369 0.98144 0.90127 1.24902 0.95894 0.98699 0.94798 1.69943 1.46032 1.31708 1.06057 0.86695 0.77719 0.85032 0.79599 1.19397 1.21033 1.21135 1.22101 0.90165 0.96794 0.92199 1.22592 0.97483 0.98790 0.95965 1.22449 0.97023 0.99267 0.97389 1.22386 0.97165 1.00438 0.95218 1.22908 0.95372 0.96180 1.04940 1.22376 1.01920 0.96394 0.95564 1.22651 0.88201 0.97233 0.97440 1.67466 1.10702 1.18769 1.20241 0.83542 0.93698 0.89669 0.97170 0.95511 0.93017 0.93025 0.88776 0.93935 0.93256 0.92752 0.94378 0.89072 0.95024 0.87104 0.84226 0.81882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.18 18.54 41.84 0.78 -5.40 16 2 C 0.27 3.82 15.53 -22.47 -0.35 3.47 16 3 C 0.18 2.31 6.58 -85.07 -0.56 1.75 16 4 C -0.09 -1.17 9.52 -39.03 -0.37 -1.54 16 5 C -0.01 -0.15 5.15 -104.36 -0.54 -0.69 16 6 C 0.08 1.17 5.06 -4.98 -0.03 1.14 16 7 N -0.53 -9.40 4.36 -228.18 -1.00 -10.40 16 8 C 0.19 4.10 4.16 -4.98 -0.02 4.08 16 9 C -0.50 -12.08 5.23 -34.44 -0.18 -12.26 16 10 H 0.08 1.93 3.91 -52.49 -0.21 1.72 16 11 C 0.06 1.48 5.14 -17.82 -0.09 1.39 16 12 N -0.90 -24.33 13.29 55.43 0.74 -23.60 16 13 Si 0.88 20.11 28.51 -169.99 -4.85 15.26 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.10 1.61 2.72 -66.59 -0.18 1.43 16 18 C -0.11 -1.90 5.88 -25.03 -0.15 -2.04 16 19 C -0.12 -2.01 6.90 -24.69 -0.17 -2.18 16 20 C -0.11 -2.09 6.17 -25.07 -0.15 -2.25 16 21 C -0.16 -2.83 5.63 -25.61 -0.14 -2.97 16 22 C -0.14 -1.46 8.73 -39.33 -0.34 -1.80 16 23 C 0.10 1.04 11.18 -17.57 -0.20 0.85 16 24 N -0.46 -5.77 10.28 -11.16 -0.11 -5.89 16 25 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 26 H 0.04 0.60 7.92 -51.93 -0.41 0.19 16 27 H 0.08 1.20 7.85 -51.93 -0.41 0.79 16 28 H 0.01 0.26 5.83 -51.93 -0.30 -0.04 16 29 H 0.03 0.65 8.04 -51.93 -0.42 0.23 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.05 0.76 5.84 -51.93 -0.30 0.46 16 32 H 0.09 1.87 5.39 -51.93 -0.28 1.59 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.93 4.70 -51.93 -0.24 1.68 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.11 2.37 3.99 -51.93 -0.21 2.16 16 40 H 0.14 1.19 7.52 -52.49 -0.39 0.79 16 41 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -27.08 326.00 -8.27 -35.35 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.27 Total: 1.39 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -3.47 Total: -11.63 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.40 Total: -45.28 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.85 Total: 15.26 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.08 -8.27 -35.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237464063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.138 kcal (2) G-P(sol) polarization free energy of solvation -27.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds