Wall clock time and date at job start Tue Mar 31 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47204 * 2 1 4 4 H 1.09007 * 109.46721 * 305.00148 * 3 2 1 5 5 C 1.50694 * 109.47355 * 184.99859 * 3 2 1 6 6 H 1.08000 * 120.00563 * 239.99848 * 5 3 2 7 7 C 1.37885 * 119.99902 * 60.00012 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46497 * 109.47021 * 64.99787 * 3 2 1 14 14 C 1.34779 * 119.99943 * 275.00054 * 13 3 2 15 15 O 1.21283 * 120.00516 * 0.02562 * 14 13 3 16 16 C 1.50709 * 119.99796 * 180.02562 * 14 13 3 17 17 H 1.08999 * 109.46791 * 304.99630 * 16 14 13 18 18 C 1.52998 * 109.47349 * 65.00135 * 16 14 13 19 19 O 1.42899 * 109.47059 * 185.00328 * 16 14 13 20 20 C 1.42893 * 114.00259 * 149.99497 * 19 16 14 21 21 C 1.53006 * 109.47505 * 179.97438 * 20 19 16 22 22 H 1.08997 * 110.27132 * 54.29949 * 21 20 19 23 23 C 1.54945 * 110.31279 * 176.39387 * 21 20 19 24 24 C 1.55410 * 100.89376 * 155.28698 * 23 21 20 25 25 C 1.54387 * 102.31019 * 325.99073 * 24 23 21 26 26 O 1.43245 * 107.58662 * 21.28510 * 25 24 23 27 27 H 1.08992 * 109.46922 * 299.99976 * 1 2 3 28 28 H 1.08997 * 109.46919 * 60.00309 * 1 2 3 29 29 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47496 * 240.00053 * 2 1 3 31 31 H 1.09002 * 109.47332 * 119.99482 * 2 1 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 33 33 H 0.96997 * 120.00208 * 95.00345 * 13 3 2 34 34 H 1.09001 * 109.46829 * 299.99911 * 18 16 14 35 35 H 1.08995 * 109.46778 * 59.99599 * 18 16 14 36 36 H 1.08995 * 109.46780 * 180.02562 * 18 16 14 37 37 H 1.09001 * 109.47712 * 300.00364 * 20 19 16 38 38 H 1.09004 * 109.46984 * 60.00394 * 20 19 16 39 39 H 1.08999 * 111.12075 * 273.28069 * 23 21 20 40 40 H 1.09006 * 111.12271 * 37.44220 * 23 21 20 41 41 H 1.08996 * 110.88669 * 207.75165 * 24 23 21 42 42 H 1.09004 * 110.93347 * 84.24903 * 24 23 21 43 43 H 1.08989 * 109.82787 * 261.76988 * 25 24 23 44 44 H 1.08999 * 109.90046 * 140.83947 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1729 9 14 6.0050 0.8813 -1.3817 10 1 6.4417 2.1142 -2.0849 11 1 6.6136 0.8418 -0.0278 12 1 6.4396 -0.3098 -2.1548 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3397 2.6319 0.4343 16 6 0.0366 3.3387 2.6544 17 1 0.1531 2.6390 3.4821 18 6 0.9292 4.5590 2.8886 19 8 -1.3278 3.7553 2.5715 20 6 -2.0086 3.7693 3.8277 21 6 -3.4531 4.2291 3.6199 22 1 -3.9411 3.6118 2.8656 23 6 -4.2355 4.1649 4.9558 24 6 -5.3478 5.2186 4.6956 25 6 -4.6165 6.2604 3.8220 26 8 -3.4851 5.6112 3.2300 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8294 -0.0612 -2.9498 33 1 2.2719 2.1232 1.9977 34 1 1.9699 4.2411 2.9519 35 1 0.8127 5.2585 2.0609 36 1 0.6413 5.0463 3.8201 37 1 -2.0040 2.7665 4.2548 38 1 -1.5035 4.4559 4.5071 39 1 -4.6604 3.1739 5.1149 40 1 -3.6049 4.4594 5.7948 41 1 -5.6863 5.6653 5.6304 42 1 -6.1840 4.7765 4.1538 43 1 -4.2829 7.0932 4.4410 44 1 -5.2843 6.6244 3.0412 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248402216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:48 Heat of formation + Delta-G solvation = -140.380773 kcal Electronic energy + Delta-G solvation = -23295.882009 eV Core-core repulsion = 19827.097292 eV Total energy + Delta-G solvation = -3468.784717 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.77040 -39.17597 -37.24876 -34.88622 -32.64830 -32.39161 -31.79166 -30.75250 -29.78897 -26.93110 -25.69301 -23.94126 -22.73909 -21.89939 -21.42203 -20.17366 -19.23670 -17.35135 -17.32706 -16.53257 -16.13369 -15.61727 -15.34302 -15.07372 -14.77955 -14.26496 -14.24361 -13.59815 -13.53219 -13.23235 -12.65028 -12.48290 -12.33465 -12.13855 -11.98636 -11.85400 -11.55029 -11.44413 -11.30914 -11.21976 -11.18465 -10.98512 -10.88878 -10.80429 -10.28313 -10.14995 -9.66312 -9.61351 -9.58420 -9.02156 -8.71476 -8.45711 -7.76454 -6.09752 -4.19092 3.26001 3.30856 3.33432 3.37600 3.46064 3.63965 4.17718 4.25098 4.41458 4.57075 4.72216 4.93165 4.98750 5.04054 5.12027 5.21319 5.27970 5.29768 5.36438 5.39533 5.46842 5.49432 5.58503 5.67887 5.77415 5.87945 5.93471 6.29607 6.43008 6.50161 6.70424 6.89107 7.07575 7.19104 7.29686 7.41703 7.50613 7.65756 7.78411 7.94398 8.21402 8.71430 8.82112 9.20554 9.48432 10.95600 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.036254 B = 0.003177 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.132913 B = 8811.995874 C = 9172.834377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.285 1.285 13 N -0.708 5.708 14 C 0.502 3.498 15 O -0.527 6.527 16 C 0.068 3.932 17 H 0.076 0.924 18 C -0.166 4.166 19 O -0.346 6.346 20 C 0.061 3.939 21 C 0.084 3.916 22 H 0.082 0.918 23 C -0.150 4.150 24 C -0.155 4.155 25 C 0.047 3.953 26 O -0.368 6.368 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.022 0.978 30 H 0.099 0.901 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.141 6.872 16.624 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.211 1.211 13 N -0.358 5.358 14 C 0.285 3.715 15 O -0.403 6.403 16 C 0.006 3.994 17 H 0.094 0.906 18 C -0.224 4.224 19 O -0.264 6.264 20 C -0.016 4.016 21 C 0.027 3.973 22 H 0.100 0.900 23 C -0.187 4.187 24 C -0.193 4.193 25 C -0.029 4.029 26 O -0.287 6.287 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.117 0.883 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.626 6.892 15.421 21.089 hybrid contribution 1.232 -0.180 0.699 1.428 sum -11.393 6.712 16.121 20.851 Atomic orbital electron populations 1.21841 0.98337 0.97971 1.01321 1.21940 0.92608 0.99851 1.02232 1.18779 0.94138 0.89110 0.80959 0.93298 1.21228 0.90698 1.38944 1.06279 0.92096 1.24892 0.98565 0.94844 0.95418 1.69900 1.35101 1.37617 1.09317 0.86460 0.84912 0.77629 0.78151 1.20583 1.19883 1.21103 1.46431 1.14325 1.56363 1.18636 1.20075 0.83092 0.79559 0.88729 1.90689 1.51156 1.58549 1.39937 1.22026 0.83603 0.96352 0.97403 0.90581 1.22183 0.99430 0.98115 1.02705 1.88125 1.22223 1.87800 1.28263 1.22707 0.91984 0.99658 0.87256 1.22984 0.94617 0.84194 0.95526 0.90045 1.23266 0.97302 1.00487 0.97665 1.23127 0.98592 0.96701 1.00845 1.23130 0.88135 0.95512 0.96170 1.88565 1.46469 1.21715 1.71946 0.94323 0.93115 0.95893 0.88284 0.95074 0.92576 0.78114 0.90884 0.91082 0.92041 0.92092 0.92723 0.89476 0.90107 0.89982 0.90362 0.91477 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.51 37.16 0.32 -2.84 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.91 2.24 -69.09 -0.15 6.75 16 4 H 0.05 1.45 7.58 -51.92 -0.39 1.06 16 5 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.87 11.29 55.43 0.63 -24.25 16 9 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.71 -14.79 4.98 -54.93 -0.27 -15.07 16 14 C 0.50 10.44 5.75 -10.98 -0.06 10.37 16 15 O -0.53 -13.25 13.64 -14.30 -0.20 -13.44 16 16 C 0.07 1.08 3.13 -27.88 -0.09 0.99 16 17 H 0.08 0.99 7.79 -51.93 -0.40 0.58 16 18 C -0.17 -2.27 9.48 37.16 0.35 -1.92 16 19 O -0.35 -5.95 9.52 -57.80 -0.55 -6.50 16 20 C 0.06 0.75 5.45 37.16 0.20 0.96 16 21 C 0.08 0.98 3.72 -25.70 -0.10 0.89 16 22 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 23 C -0.15 -1.15 6.58 -24.43 -0.16 -1.31 16 24 C -0.16 -1.08 7.02 -24.73 -0.17 -1.25 16 25 C 0.05 0.44 7.80 37.88 0.30 0.74 16 26 O -0.37 -5.02 11.04 -35.96 -0.40 -5.42 16 27 H 0.04 0.87 5.64 -51.93 -0.29 0.57 16 28 H 0.05 1.25 7.85 -51.93 -0.41 0.84 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.39 6.90 8.32 -40.82 -0.34 6.57 16 34 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.69 7.87 -51.93 -0.41 0.29 16 37 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.05 0.60 7.87 -51.93 -0.41 0.19 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.54 8.14 -51.94 -0.42 0.12 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -32.76 352.76 -8.16 -40.92 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.56 Total: 5.42 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.11 Total: -2.61 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.35 Total: -39.31 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -1.14 Total: -25.36 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.76 -8.16 -40.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248402216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.460 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds