Wall clock time and date at job start Tue Mar 31 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47204 * 2 1 4 4 H 1.09007 * 109.46721 * 305.00148 * 3 2 1 5 5 C 1.50694 * 109.47355 * 184.99859 * 3 2 1 6 6 H 1.08000 * 120.00563 * 239.99848 * 5 3 2 7 7 C 1.37885 * 119.99902 * 60.00012 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46497 * 109.47021 * 64.99787 * 3 2 1 14 14 C 1.34779 * 119.99943 * 275.00054 * 13 3 2 15 15 O 1.21283 * 120.00516 * 0.02562 * 14 13 3 16 16 C 1.50709 * 119.99796 * 180.02562 * 14 13 3 17 17 H 1.08999 * 109.46791 * 304.99630 * 16 14 13 18 18 C 1.52998 * 109.47349 * 65.00135 * 16 14 13 19 19 O 1.42899 * 109.47059 * 185.00328 * 16 14 13 20 20 C 1.42893 * 114.00259 * 149.99497 * 19 16 14 21 21 C 1.53006 * 109.47505 * 179.97438 * 20 19 16 22 22 H 1.08997 * 110.27132 * 54.29949 * 21 20 19 23 23 C 1.54945 * 110.31279 * 176.39387 * 21 20 19 24 24 C 1.55410 * 100.89376 * 155.28698 * 23 21 20 25 25 C 1.54387 * 102.31019 * 325.99073 * 24 23 21 26 26 O 1.43245 * 107.58662 * 21.28510 * 25 24 23 27 27 H 1.08992 * 109.46922 * 299.99976 * 1 2 3 28 28 H 1.08997 * 109.46919 * 60.00309 * 1 2 3 29 29 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47496 * 240.00053 * 2 1 3 31 31 H 1.09002 * 109.47332 * 119.99482 * 2 1 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 33 33 H 0.96997 * 120.00208 * 95.00345 * 13 3 2 34 34 H 1.09001 * 109.46829 * 299.99911 * 18 16 14 35 35 H 1.08995 * 109.46778 * 59.99599 * 18 16 14 36 36 H 1.08995 * 109.46780 * 180.02562 * 18 16 14 37 37 H 1.09001 * 109.47712 * 300.00364 * 20 19 16 38 38 H 1.09004 * 109.46984 * 60.00394 * 20 19 16 39 39 H 1.08999 * 111.12075 * 273.28069 * 23 21 20 40 40 H 1.09006 * 111.12271 * 37.44220 * 23 21 20 41 41 H 1.08996 * 110.88669 * 207.75165 * 24 23 21 42 42 H 1.09004 * 110.93347 * 84.24903 * 24 23 21 43 43 H 1.08989 * 109.82787 * 261.76988 * 25 24 23 44 44 H 1.08999 * 109.90046 * 140.83947 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1729 9 14 6.0050 0.8813 -1.3817 10 1 6.4417 2.1142 -2.0849 11 1 6.6136 0.8418 -0.0278 12 1 6.4396 -0.3098 -2.1548 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3397 2.6319 0.4343 16 6 0.0366 3.3387 2.6544 17 1 0.1531 2.6390 3.4821 18 6 0.9292 4.5590 2.8886 19 8 -1.3278 3.7553 2.5715 20 6 -2.0086 3.7693 3.8277 21 6 -3.4531 4.2291 3.6199 22 1 -3.9411 3.6118 2.8656 23 6 -4.2355 4.1649 4.9558 24 6 -5.3478 5.2186 4.6956 25 6 -4.6165 6.2604 3.8220 26 8 -3.4851 5.6112 3.2300 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8294 -0.0612 -2.9498 33 1 2.2719 2.1232 1.9977 34 1 1.9699 4.2411 2.9519 35 1 0.8127 5.2585 2.0609 36 1 0.6413 5.0463 3.8201 37 1 -2.0040 2.7665 4.2548 38 1 -1.5035 4.4559 4.5071 39 1 -4.6604 3.1739 5.1149 40 1 -3.6049 4.4594 5.7948 41 1 -5.6863 5.6653 5.6304 42 1 -6.1840 4.7765 4.1538 43 1 -4.2829 7.0932 4.4410 44 1 -5.2843 6.6244 3.0412 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248402216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:47 Heat of formation + Delta-G solvation = -162.927864 kcal Electronic energy + Delta-G solvation = -23296.859724 eV Core-core repulsion = 19827.097292 eV Total energy + Delta-G solvation = -3469.762433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.99930 -40.37385 -38.55965 -36.79326 -34.41235 -33.45593 -33.08685 -32.16356 -30.91414 -28.88908 -26.56756 -25.49091 -24.47029 -22.56840 -22.26902 -21.91757 -21.04575 -19.04120 -18.26698 -17.69212 -17.54876 -17.00697 -16.75075 -16.39146 -16.17840 -15.71520 -15.57747 -15.03623 -14.59344 -14.53010 -14.12998 -13.84837 -13.66083 -13.38085 -13.22300 -13.12175 -13.02270 -12.86889 -12.68851 -12.64688 -12.42153 -12.17193 -12.13886 -12.09439 -12.00053 -11.67244 -11.57689 -11.05163 -10.85535 -10.55107 -10.47404 -10.28383 -9.62376 -8.14736 -6.32317 1.45820 1.46430 1.56971 1.83151 2.10642 2.43980 2.86698 3.03587 3.14952 3.56100 3.82772 3.93594 3.98150 4.02734 4.09388 4.15968 4.30178 4.39687 4.48526 4.49072 4.56662 4.60520 4.71214 4.74969 4.82133 4.82817 4.89513 4.98590 5.01841 5.06213 5.20499 5.24725 5.25695 5.44189 5.56503 5.63488 5.79483 5.91759 6.08333 6.17598 6.25104 6.75937 7.01668 7.34956 7.60935 8.90820 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.036254 B = 0.003177 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.132913 B = 8811.995874 C = 9172.834377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.007 1.007 5 C -0.546 4.546 6 H 0.075 0.925 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.971 3.029 10 H -0.280 1.280 11 H -0.258 1.258 12 H -0.285 1.285 13 N -0.700 5.700 14 C 0.495 3.505 15 O -0.579 6.579 16 C 0.077 3.923 17 H 0.116 0.884 18 C -0.160 4.160 19 O -0.386 6.386 20 C 0.055 3.945 21 C 0.074 3.926 22 H 0.059 0.941 23 C -0.138 4.138 24 C -0.148 4.148 25 C 0.036 3.964 26 O -0.406 6.406 27 H 0.042 0.958 28 H 0.020 0.980 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.405 0.595 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 6.944 20.032 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.011 0.989 5 C -0.584 4.584 6 H 0.093 0.907 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.796 3.204 10 H -0.206 1.206 11 H -0.181 1.181 12 H -0.210 1.210 13 N -0.351 5.351 14 C 0.281 3.719 15 O -0.459 6.459 16 C 0.016 3.984 17 H 0.133 0.867 18 C -0.218 4.218 19 O -0.304 6.304 20 C -0.021 4.021 21 C 0.016 3.984 22 H 0.077 0.923 23 C -0.176 4.176 24 C -0.186 4.186 25 C -0.040 4.040 26 O -0.327 6.327 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.041 6.978 18.888 23.462 hybrid contribution 0.967 -0.151 -0.388 1.053 sum -11.074 6.828 18.501 22.617 Atomic orbital electron populations 1.21674 0.97227 0.99089 1.00050 1.21786 0.93486 0.99157 1.01490 1.18368 0.93747 0.89125 0.81244 0.98931 1.21580 0.91228 1.38810 1.06776 0.90718 1.25805 1.03404 0.94404 0.95040 1.70063 1.37126 1.38433 1.09883 0.85355 0.79014 0.77309 0.78705 1.20616 1.18149 1.21048 1.46161 1.15124 1.56043 1.17728 1.21082 0.82095 0.78598 0.90132 1.90666 1.52580 1.60323 1.42344 1.21981 0.83870 0.97595 0.94947 0.86678 1.22172 0.99846 0.96676 1.03113 1.88094 1.22846 1.88027 1.31475 1.23016 0.91905 1.01486 0.85731 1.23124 0.94823 0.83189 0.97227 0.92342 1.23261 0.97019 1.01684 0.95614 1.23137 0.98177 0.95803 1.01449 1.23359 0.87526 0.96416 0.96723 1.88522 1.48199 1.22800 1.73151 0.93916 0.96051 0.93391 0.90996 0.93593 0.92645 0.75969 0.89374 0.93742 0.88953 0.89801 0.90928 0.87804 0.88582 0.87487 0.90091 0.90302 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.51 71.98 0.61 -5.15 16 2 C -0.12 -6.02 5.45 30.60 0.17 -5.85 16 3 C 0.28 14.53 2.24 44.24 0.10 14.63 16 4 H -0.01 -0.45 7.58 -2.38 -0.02 -0.47 16 5 C -0.55 -28.89 8.73 25.60 0.22 -28.66 16 6 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 7 C 0.01 0.72 5.29 84.66 0.45 1.17 16 8 N -0.92 -53.11 11.29 21.45 0.24 -52.86 16 9 Si 0.97 42.12 29.54 68.60 2.03 44.15 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 N -0.70 -29.12 4.98 -446.09 -2.22 -31.34 16 14 C 0.49 20.70 5.75 87.66 0.50 21.21 16 15 O -0.58 -30.41 13.64 15.95 0.22 -30.19 16 16 C 0.08 2.32 3.13 29.85 0.09 2.42 16 17 H 0.12 2.56 7.79 -2.39 -0.02 2.54 16 18 C -0.16 -4.04 9.48 71.98 0.68 -3.36 16 19 O -0.39 -13.02 9.52 -127.40 -1.21 -14.24 16 20 C 0.05 1.24 5.45 71.98 0.39 1.63 16 21 C 0.07 1.66 3.72 31.26 0.12 1.78 16 22 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 23 C -0.14 -1.75 6.58 32.09 0.21 -1.53 16 24 C -0.15 -1.71 7.02 31.89 0.22 -1.49 16 25 C 0.04 0.63 7.80 72.45 0.56 1.20 16 26 O -0.41 -11.07 11.04 -148.28 -1.64 -12.70 16 27 H 0.04 1.93 5.64 -2.39 -0.01 1.92 16 28 H 0.02 1.08 7.85 -2.39 -0.02 1.06 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 4.03 5.95 -2.39 -0.01 4.01 16 31 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 33 H 0.40 13.76 8.32 -92.71 -0.77 12.99 16 34 H 0.09 1.93 7.93 -2.39 -0.02 1.91 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.77 7.87 -2.39 -0.02 1.75 16 37 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 38 H 0.07 1.36 7.87 -2.38 -0.02 1.34 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 0.94 8.06 -2.38 -0.02 0.92 16 41 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -75.34 352.76 1.95 -73.38 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.20 Total: 25.81 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 4.34 Total: -2.01 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -1.98 Total: -84.21 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -2.63 Total: -57.13 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -75.34 1.95 -73.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248402216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.547 kcal (2) G-P(sol) polarization free energy of solvation -75.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds