Wall clock time and date at job start Tue Mar 31 2020 06:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 116.99455 * 2 1 4 4 O 1.20823 * 120.00520 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99325 * 179.97438 * 3 2 1 6 6 H 1.08993 * 109.57840 * 300.15759 * 5 3 2 7 7 C 1.53121 * 109.52057 * 60.31997 * 5 3 2 8 8 C 1.53044 * 109.27675 * 177.55709 * 7 5 3 9 9 N 1.46852 * 109.52207 * 300.81913 * 8 7 5 10 10 C 1.46899 * 110.99911 * 185.84029 * 9 8 7 11 11 C 1.52995 * 109.47060 * 52.03382 * 10 9 8 12 12 O 1.42897 * 109.47187 * 62.32306 * 11 10 9 13 13 C 1.42898 * 113.99859 * 179.97438 * 12 11 10 14 14 C 1.50709 * 109.46949 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00071 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99663 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00289 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99623 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47431 * 59.99548 * 18 16 14 20 20 H 1.48498 * 109.47095 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47012 * 299.99634 * 18 16 14 22 22 C 1.46845 * 111.19769 * 61.74264 * 9 8 7 23 23 C 1.53040 * 109.52366 * 298.25635 * 22 9 8 24 24 H 1.09001 * 109.50387 * 179.11873 * 23 22 9 25 25 C 1.53001 * 109.50339 * 299.19879 * 23 22 9 26 26 H 1.08994 * 109.47321 * 60.00353 * 1 2 3 27 27 H 1.09002 * 109.46871 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47208 * 300.00129 * 1 2 3 29 29 H 1.09000 * 109.50462 * 297.49364 * 7 5 3 30 30 H 1.08997 * 109.50685 * 57.57931 * 7 5 3 31 31 H 1.08998 * 109.46445 * 180.80231 * 8 7 5 32 32 H 1.08997 * 109.46312 * 60.83300 * 8 7 5 33 33 H 1.09007 * 109.47024 * 292.03699 * 10 9 8 34 34 H 1.09000 * 109.47352 * 172.04008 * 10 9 8 35 35 H 1.09000 * 109.47544 * 302.31309 * 11 10 9 36 36 H 1.09008 * 109.46960 * 182.32457 * 11 10 9 37 37 H 1.09002 * 109.47586 * 299.99798 * 13 12 11 38 38 H 1.08996 * 109.47458 * 59.99858 * 13 12 11 39 39 H 0.97002 * 120.00235 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.46562 * 58.27509 * 22 9 8 41 41 H 1.09000 * 109.46489 * 178.25256 * 22 9 8 42 42 H 1.09002 * 109.46752 * 59.99924 * 25 23 22 43 43 H 1.08994 * 109.46983 * 179.97438 * 25 23 22 44 44 H 1.08995 * 109.47244 * 300.00390 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9577 0.7789 0.8888 7 6 4.1151 0.5877 -1.2529 8 6 5.6393 0.7241 -1.2775 9 7 6.0047 2.1465 -1.2774 10 6 7.4546 2.3175 -1.4403 11 6 7.9268 1.5295 -2.6638 12 8 7.2970 2.0486 -3.8367 13 6 7.6721 1.3793 -5.0423 14 6 6.9518 2.0048 -6.2091 15 1 6.2751 2.8305 -6.0461 16 6 7.1562 1.5222 -7.4843 17 7 7.9799 0.5164 -7.6827 18 14 6.2640 2.2980 -8.9306 19 1 6.6319 3.7334 -9.0269 20 1 6.6537 1.6025 -10.1834 21 1 4.7976 2.1752 -8.7312 22 6 5.5291 2.8168 -0.0606 23 6 4.0017 2.7429 0.0004 24 1 3.6500 3.2268 0.9116 25 6 3.4069 3.4529 -1.2174 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.8445 -0.4680 -1.2372 30 1 3.6927 1.0586 -2.1406 31 1 6.0320 0.2483 -2.1761 32 1 6.0615 0.2407 -0.3966 33 1 7.9661 1.9487 -0.5511 34 1 7.6826 3.3743 -1.5785 35 1 7.6622 0.4790 -2.5438 36 1 9.0086 1.6228 -2.7606 37 1 8.7484 1.4698 -5.1885 38 1 7.4024 0.3256 -4.9720 39 1 8.1234 0.1766 -8.5798 40 1 5.9518 2.3235 0.8147 41 1 5.8417 3.8609 -0.0753 42 1 3.7579 2.9676 -2.1281 43 1 2.3192 3.3995 -1.1736 44 1 3.7202 4.4969 -1.2182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339121757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:18 Heat of formation + Delta-G solvation = -130.575789 kcal Electronic energy + Delta-G solvation = -23626.868954 eV Core-core repulsion = 20158.509412 eV Total energy + Delta-G solvation = -3468.359541 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99534 -39.09891 -36.94364 -36.37227 -34.15114 -32.58986 -31.72509 -29.28651 -28.22598 -26.77582 -26.73281 -24.44526 -23.06690 -22.26314 -21.57797 -20.56707 -18.78483 -17.67387 -16.94490 -16.57949 -16.34717 -15.85548 -15.54269 -15.00454 -14.60121 -14.42508 -14.29632 -14.05407 -13.74518 -13.40524 -13.21677 -12.96754 -12.50400 -12.35628 -12.16849 -11.87718 -11.55112 -11.51311 -11.33761 -11.12285 -11.01489 -10.83228 -10.78907 -10.67626 -10.58352 -10.53361 -10.18736 -10.00760 -9.80683 -9.05716 -8.75204 -8.11187 -8.00405 -6.06566 -4.07441 2.09466 2.58971 3.35827 3.38049 3.42588 4.00935 4.38839 4.42254 4.65166 4.71248 4.89772 4.90807 4.98569 5.05315 5.17541 5.24622 5.30028 5.30987 5.37058 5.49360 5.53029 5.62239 5.68166 5.77440 5.83789 5.92294 5.95008 6.07029 6.11614 6.20214 6.22049 6.30665 6.35477 6.50168 6.79989 7.13535 7.28520 7.31161 7.47221 7.66242 7.85322 8.21241 8.65708 9.07144 9.57402 11.05046 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.004011 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.820411 B = 6979.000253 C = 7863.737653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.467 3.533 4 O -0.500 6.500 5 C -0.076 4.076 6 H 0.102 0.898 7 C -0.108 4.108 8 C 0.054 3.946 9 N -0.520 5.520 10 C 0.063 3.937 11 C 0.060 3.940 12 O -0.378 6.378 13 C 0.194 3.806 14 C -0.511 4.511 15 H 0.066 0.934 16 C 0.056 3.944 17 N -0.901 5.901 18 Si 0.906 3.094 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.062 3.938 23 C -0.068 4.068 24 H 0.075 0.925 25 C -0.157 4.157 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.029 0.971 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.002 0.998 38 H 0.002 0.998 39 H 0.263 0.737 40 H 0.029 0.971 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.858 -1.289 19.045 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.310 3.690 4 O -0.387 6.387 5 C -0.095 4.095 6 H 0.120 0.880 7 C -0.146 4.146 8 C -0.073 4.073 9 N -0.245 5.245 10 C -0.065 4.065 11 C -0.018 4.018 12 O -0.297 6.297 13 C 0.120 3.880 14 C -0.549 4.549 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.540 5.540 18 Si 0.734 3.266 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.066 4.066 23 C -0.087 4.087 24 H 0.093 0.907 25 C -0.213 4.213 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.371 -0.733 18.490 20.742 hybrid contribution 0.045 -0.318 -0.091 0.333 sum -9.326 -1.051 18.398 20.654 Atomic orbital electron populations 1.23246 0.76608 1.03578 1.02474 1.86525 1.23233 1.33751 1.84082 1.23873 0.92083 0.81135 0.71893 1.90591 1.67255 1.35998 1.44899 1.21242 0.86644 0.99698 1.01951 0.88023 1.21636 0.95987 1.00493 0.96496 1.22161 0.94616 0.89064 1.01488 1.61788 1.13816 1.12574 1.36334 1.22126 0.86847 1.01812 0.95673 1.22352 0.95755 0.96176 0.87494 1.87976 1.68013 1.59330 1.14389 1.20170 0.94851 0.92093 0.80890 1.21029 1.26055 1.17397 0.90399 0.91545 1.24931 0.95532 0.95138 0.98866 1.69954 1.36269 1.25561 1.22251 0.86421 0.80027 0.79345 0.80837 1.20038 1.21239 1.20024 1.22115 0.94116 0.99840 0.90576 1.21023 0.94779 0.92300 1.00581 0.90655 1.22065 1.01626 0.99896 0.97762 0.91816 0.88221 0.92099 0.90395 0.89619 0.88825 0.95310 0.94531 0.89999 0.94394 0.94280 0.98048 0.97996 0.92701 0.95312 0.90186 0.90782 0.91051 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.03 10.50 -39.24 -0.41 -4.45 16 3 C 0.47 5.78 6.96 36.01 0.25 6.03 16 4 O -0.50 -7.22 13.27 -18.75 -0.25 -7.47 16 5 C -0.08 -0.86 2.48 -91.64 -0.23 -1.08 16 6 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 7 C -0.11 -1.35 4.96 -26.65 -0.13 -1.48 16 8 C 0.05 0.73 5.04 -3.83 -0.02 0.71 16 9 N -0.52 -7.52 3.96 -234.67 -0.93 -8.45 16 10 C 0.06 0.92 5.52 -3.83 -0.02 0.90 16 11 C 0.06 1.09 5.56 37.15 0.21 1.29 16 12 O -0.38 -9.04 10.23 -35.23 -0.36 -9.40 16 13 C 0.19 5.33 5.69 36.01 0.20 5.53 16 14 C -0.51 -15.15 9.43 -34.44 -0.32 -15.47 16 15 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 18 Si 0.91 22.10 29.54 -169.99 -5.02 17.08 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 22 C 0.06 0.72 4.90 -3.83 -0.02 0.71 16 23 C -0.07 -0.80 2.42 -90.54 -0.22 -1.02 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 C -0.16 -2.19 8.40 37.16 0.31 -1.88 16 26 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.26 6.58 -51.93 -0.34 0.91 16 31 H 0.09 1.47 5.79 -51.93 -0.30 1.17 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.04 0.66 6.05 -51.93 -0.31 0.34 16 36 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 38 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.92 8.12 -51.93 -0.42 0.50 16 42 H 0.07 1.20 6.01 -51.93 -0.31 0.89 16 43 H 0.07 1.06 5.33 -51.93 -0.28 0.78 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 347.46 15.07 5.24 5.24 Total: -1.00 -32.68 347.46 -7.45 -40.12 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -7.43 Total: -3.46 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 0.98 Total: -2.87 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.19 Total: -34.80 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -1.02 Total: -21.31 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.68 -7.45 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339121757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.451 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds