Wall clock time and date at job start Tue Mar 31 2020 05:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38052 * 126.34728 * 2 1 4 4 C 1.38834 * 134.13931 * 359.94154 * 3 2 1 5 5 C 1.37859 * 119.68768 * 180.34037 * 4 3 2 6 6 C 1.38772 * 120.44956 * 0.02562 * 5 4 3 7 7 C 1.36606 * 120.67178 * 359.95652 * 6 5 4 8 8 C 1.39739 * 119.88538 * 0.04125 * 7 6 5 9 9 N 1.35782 * 133.60075 * 179.97438 * 8 7 6 10 10 C 1.30114 * 109.64345 * 180.02562 * 9 8 7 11 11 C 1.50695 * 124.94922 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.58392 * 177.10110 * 11 10 9 13 13 C 1.53184 * 109.58769 * 297.38574 * 11 10 9 14 14 C 1.53042 * 109.31653 * 174.56812 * 13 11 10 15 15 C 1.53044 * 109.52514 * 298.64456 * 14 13 11 16 16 C 1.53162 * 109.33030 * 61.36621 * 15 14 13 17 17 N 1.46928 * 109.70477 * 56.74970 * 11 10 9 18 18 C 1.36939 * 120.63173 * 6.54991 * 17 11 10 19 19 H 1.08002 * 119.99854 * 328.97133 * 18 17 11 20 20 C 1.38806 * 119.99768 * 148.96253 * 18 17 11 21 21 N 1.31624 * 120.00429 * 345.31525 * 20 18 17 22 22 Si 1.86809 * 120.00002 * 165.30999 * 20 18 17 23 23 H 1.48500 * 109.46831 * 59.99910 * 22 20 18 24 24 H 1.48493 * 109.47467 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47035 * 300.00485 * 22 20 18 26 26 H 1.09001 * 109.47753 * 270.18615 * 1 2 3 27 27 H 1.08999 * 109.47544 * 30.19260 * 1 2 3 28 28 H 1.09006 * 109.47099 * 150.19096 * 1 2 3 29 29 H 1.08000 * 120.15586 * 0.35478 * 4 3 2 30 30 H 1.08000 * 119.76831 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.66581 * 179.97438 * 6 5 4 32 32 H 1.07998 * 120.05453 * 180.02562 * 7 6 5 33 33 H 1.08997 * 109.50260 * 54.61614 * 13 11 10 34 34 H 1.09007 * 109.52459 * 294.53062 * 13 11 10 35 35 H 1.09000 * 109.45957 * 58.65027 * 14 13 11 36 36 H 1.08999 * 109.46443 * 178.62963 * 14 13 11 37 37 H 1.09001 * 109.50239 * 181.31139 * 15 14 13 38 38 H 1.09006 * 109.49253 * 301.40192 * 15 14 13 39 39 H 1.08996 * 109.59234 * 185.57420 * 16 15 14 40 40 H 1.09000 * 109.58826 * 65.14583 * 16 15 14 41 41 H 0.96999 * 119.99515 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2832 1.1119 0.0000 4 6 2.0537 2.4812 -0.0010 5 6 3.1220 3.3525 -0.0078 6 6 4.4231 2.8699 -0.0141 7 6 4.6679 1.5260 -0.0128 8 6 3.6007 0.6239 -0.0060 9 7 3.5204 -0.7316 -0.0036 10 6 2.2712 -1.0957 0.0029 11 6 1.7881 -2.5231 0.0078 12 1 0.6997 -2.5402 0.0648 13 6 2.2464 -3.2248 -1.2744 14 6 1.8708 -4.7067 -1.2024 15 6 2.5827 -5.3577 -0.0142 16 6 2.1283 -4.6804 1.2822 17 7 2.3530 -3.2332 1.1634 18 6 3.0749 -2.5591 2.1119 19 1 3.6562 -1.6926 1.8333 20 6 3.0594 -2.9895 3.4315 21 7 2.1460 -3.8478 3.8332 22 14 4.3351 -2.3506 4.6374 23 1 4.2227 -0.8734 4.7404 24 1 4.1036 -2.9594 5.9718 25 1 5.6937 -2.7113 4.1582 26 1 -0.3635 0.0033 1.0276 27 1 -0.3634 0.8882 -0.5168 28 1 -0.3633 -0.8917 -0.5109 29 1 1.0431 2.8619 0.0037 30 1 2.9450 4.4179 -0.0090 31 1 5.2506 3.5639 -0.0198 32 1 5.6845 1.1613 -0.0174 33 1 3.3273 -3.1281 -1.3757 34 1 1.7579 -2.7672 -2.1347 35 1 0.7924 -4.8023 -1.0762 36 1 2.1741 -5.2034 -2.1240 37 1 2.3333 -6.4181 0.0229 38 1 3.6605 -5.2407 -0.1275 39 1 2.7043 -5.0720 2.1205 40 1 1.0677 -4.8735 1.4430 41 1 2.1355 -4.1488 4.7553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532718082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:42 Heat of formation + Delta-G solvation = 99.235416 kcal Electronic energy + Delta-G solvation = -23217.840190 eV Core-core repulsion = 20099.047682 eV Total energy + Delta-G solvation = -3118.792509 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.154 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.71748 -37.83491 -36.66562 -33.80460 -33.01418 -31.31877 -30.15750 -29.84551 -28.14006 -26.60952 -25.33470 -23.36471 -22.07656 -21.74595 -21.18055 -19.69401 -18.89571 -16.89311 -16.82272 -16.39797 -15.58259 -14.96837 -14.62489 -13.98494 -13.90409 -13.73558 -13.49955 -13.46537 -13.13148 -12.87503 -12.53227 -12.50458 -12.23998 -11.75724 -11.60517 -11.12866 -11.11050 -10.92716 -10.68481 -10.55288 -10.37501 -10.15703 -10.00373 -9.94093 -9.63214 -9.42236 -9.07432 -8.40257 -7.87879 -7.57164 -6.61349 -5.72979 -3.17850 1.35328 1.88742 3.01438 3.31800 3.45878 3.48639 3.54378 4.28513 4.56078 4.71575 4.86422 4.93752 5.24159 5.26559 5.32387 5.42520 5.44633 5.58762 5.64141 5.68355 5.69801 5.75473 5.80763 5.92223 6.06641 6.11306 6.15596 6.31995 6.45185 6.49143 6.67710 6.69929 6.79502 6.81073 6.84462 6.94355 6.96361 7.28754 7.40365 7.60883 7.65889 8.06365 8.51118 8.57092 9.29683 9.86713 10.42245 11.36304 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.007436 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.775854 B = 3764.431955 C = 4901.350583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.494 5.494 3 C 0.038 3.962 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.137 4.137 7 C -0.066 4.066 8 C 0.052 3.948 9 N -0.470 5.470 10 C 0.330 3.670 11 C 0.247 3.753 12 H 0.040 0.960 13 C -0.124 4.124 14 C -0.107 4.107 15 C -0.146 4.146 16 C 0.177 3.823 17 N -0.576 5.576 18 C -0.250 4.250 19 H 0.087 0.913 20 C 0.003 3.997 21 N -0.908 5.908 22 Si 0.899 3.101 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.020 0.980 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.201 7.694 -10.099 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.183 5.183 3 C -0.071 4.071 4 C -0.130 4.130 5 C -0.138 4.138 6 C -0.158 4.158 7 C -0.086 4.086 8 C -0.068 4.068 9 N -0.188 5.188 10 C 0.065 3.935 11 C 0.138 3.862 12 H 0.057 0.943 13 C -0.164 4.164 14 C -0.145 4.145 15 C -0.185 4.185 16 C 0.052 3.948 17 N -0.300 5.300 18 C -0.380 4.380 19 H 0.104 0.896 20 C -0.195 4.195 21 N -0.553 5.553 22 Si 0.730 3.270 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.208 1.208 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.038 0.962 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.675 7.089 -9.911 12.475 hybrid contribution -0.227 0.869 0.904 1.274 sum -2.903 7.958 -9.006 12.364 Atomic orbital electron populations 1.21893 0.76902 1.03717 1.03547 1.45208 1.06905 1.05195 1.60991 1.18858 0.91724 0.89213 1.07310 1.19834 0.99150 0.88949 1.05054 1.20701 0.92113 0.98628 1.02312 1.20501 0.96700 0.94708 1.03858 1.19984 0.97404 0.91561 0.99625 1.19251 0.91967 0.91005 1.04544 1.70582 1.17429 1.09193 1.21646 1.23710 0.84836 0.90408 0.94547 1.19002 0.94786 0.81689 0.90673 0.94291 1.21979 1.02463 0.95745 0.96193 1.21381 0.99830 0.95120 0.98130 1.22217 1.00334 0.98220 0.97736 1.20792 0.98058 0.81930 0.94020 1.43907 1.61285 1.02865 1.21977 1.19652 1.19911 1.12027 0.86368 0.89596 1.25100 0.97752 0.99830 0.96798 1.70020 1.33206 1.35904 1.16185 0.86403 0.82031 0.78486 0.80130 1.21077 1.21785 1.20826 0.90741 0.90411 0.89518 0.86764 0.86029 0.86047 0.85787 0.90758 0.93347 0.92828 0.93258 0.93244 0.92421 0.89408 0.96227 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.79 59.85 0.65 1.75 16 2 N -0.49 -9.10 3.21 -118.51 -0.38 -9.48 16 3 C 0.04 0.71 6.87 -83.99 -0.58 0.13 16 4 C -0.11 -1.63 10.05 -39.50 -0.40 -2.03 16 5 C -0.12 -1.58 10.03 -39.52 -0.40 -1.97 16 6 C -0.14 -1.93 9.96 -39.97 -0.40 -2.33 16 7 C -0.07 -1.14 10.05 -39.61 -0.40 -1.54 16 8 C 0.05 1.06 7.23 -84.70 -0.61 0.45 16 9 N -0.47 -10.73 9.18 -8.24 -0.08 -10.81 16 10 C 0.33 7.03 5.47 -154.83 -0.85 6.18 16 11 C 0.25 5.18 3.26 -68.76 -0.22 4.95 16 12 H 0.04 0.79 6.71 -51.92 -0.35 0.44 16 13 C -0.12 -2.23 5.35 -26.61 -0.14 -2.38 16 14 C -0.11 -1.77 5.89 -26.69 -0.16 -1.93 16 15 C -0.15 -2.77 6.08 -26.62 -0.16 -2.93 16 16 C 0.18 4.15 5.27 -3.72 -0.02 4.13 16 17 N -0.58 -14.35 2.98 -166.11 -0.50 -14.84 16 18 C -0.25 -7.02 8.73 -15.06 -0.13 -7.15 16 19 H 0.09 2.52 5.33 -52.49 -0.28 2.24 16 20 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 21 N -0.91 -26.48 11.27 55.49 0.63 -25.86 16 22 Si 0.90 23.06 29.58 -169.99 -5.03 18.03 16 23 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 25 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.09 1.04 7.06 -51.93 -0.37 0.67 16 29 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 33 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.09 2.32 6.22 -51.93 -0.32 2.00 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -32.50 326.66 -10.28 -42.79 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.95 Total: -0.10 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -3.90 Total: -4.66 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.32 Total: -60.99 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.03 Total: 18.03 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.50 -10.28 -42.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532718082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.023 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds