Wall clock time and date at job start Tue Mar 31 2020 05:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38052 * 126.34728 * 2 1 4 4 C 1.38834 * 134.13931 * 359.94154 * 3 2 1 5 5 C 1.37859 * 119.68768 * 180.34037 * 4 3 2 6 6 C 1.38772 * 120.44956 * 0.02562 * 5 4 3 7 7 C 1.36606 * 120.67178 * 359.95652 * 6 5 4 8 8 C 1.39739 * 119.88538 * 0.04125 * 7 6 5 9 9 N 1.35782 * 133.60075 * 179.97438 * 8 7 6 10 10 C 1.30114 * 109.64345 * 180.02562 * 9 8 7 11 11 C 1.50695 * 124.94922 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.58392 * 177.10110 * 11 10 9 13 13 C 1.53184 * 109.58769 * 297.38574 * 11 10 9 14 14 C 1.53042 * 109.31653 * 174.56812 * 13 11 10 15 15 C 1.53044 * 109.52514 * 298.64456 * 14 13 11 16 16 C 1.53162 * 109.33030 * 61.36621 * 15 14 13 17 17 N 1.46928 * 109.70477 * 56.74970 * 11 10 9 18 18 C 1.36939 * 120.63173 * 6.54991 * 17 11 10 19 19 H 1.08002 * 119.99854 * 328.97133 * 18 17 11 20 20 C 1.38806 * 119.99768 * 148.96253 * 18 17 11 21 21 N 1.31624 * 120.00429 * 345.31525 * 20 18 17 22 22 Si 1.86809 * 120.00002 * 165.30999 * 20 18 17 23 23 H 1.48500 * 109.46831 * 59.99910 * 22 20 18 24 24 H 1.48493 * 109.47467 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47035 * 300.00485 * 22 20 18 26 26 H 1.09001 * 109.47753 * 270.18615 * 1 2 3 27 27 H 1.08999 * 109.47544 * 30.19260 * 1 2 3 28 28 H 1.09006 * 109.47099 * 150.19096 * 1 2 3 29 29 H 1.08000 * 120.15586 * 0.35478 * 4 3 2 30 30 H 1.08000 * 119.76831 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.66581 * 179.97438 * 6 5 4 32 32 H 1.07998 * 120.05453 * 180.02562 * 7 6 5 33 33 H 1.08997 * 109.50260 * 54.61614 * 13 11 10 34 34 H 1.09007 * 109.52459 * 294.53062 * 13 11 10 35 35 H 1.09000 * 109.45957 * 58.65027 * 14 13 11 36 36 H 1.08999 * 109.46443 * 178.62963 * 14 13 11 37 37 H 1.09001 * 109.50239 * 181.31139 * 15 14 13 38 38 H 1.09006 * 109.49253 * 301.40192 * 15 14 13 39 39 H 1.08996 * 109.59234 * 185.57420 * 16 15 14 40 40 H 1.09000 * 109.58826 * 65.14583 * 16 15 14 41 41 H 0.96999 * 119.99515 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2832 1.1119 0.0000 4 6 2.0537 2.4812 -0.0010 5 6 3.1220 3.3525 -0.0078 6 6 4.4231 2.8699 -0.0141 7 6 4.6679 1.5260 -0.0128 8 6 3.6007 0.6239 -0.0060 9 7 3.5204 -0.7316 -0.0036 10 6 2.2712 -1.0957 0.0029 11 6 1.7881 -2.5231 0.0078 12 1 0.6997 -2.5402 0.0648 13 6 2.2464 -3.2248 -1.2744 14 6 1.8708 -4.7067 -1.2024 15 6 2.5827 -5.3577 -0.0142 16 6 2.1283 -4.6804 1.2822 17 7 2.3530 -3.2332 1.1634 18 6 3.0749 -2.5591 2.1119 19 1 3.6562 -1.6926 1.8333 20 6 3.0594 -2.9895 3.4315 21 7 2.1460 -3.8478 3.8332 22 14 4.3351 -2.3506 4.6374 23 1 4.2227 -0.8734 4.7404 24 1 4.1036 -2.9594 5.9718 25 1 5.6937 -2.7113 4.1582 26 1 -0.3635 0.0033 1.0276 27 1 -0.3634 0.8882 -0.5168 28 1 -0.3633 -0.8917 -0.5109 29 1 1.0431 2.8619 0.0037 30 1 2.9450 4.4179 -0.0090 31 1 5.2506 3.5639 -0.0198 32 1 5.6845 1.1613 -0.0174 33 1 3.3273 -3.1281 -1.3757 34 1 1.7579 -2.7672 -2.1347 35 1 0.7924 -4.8023 -1.0762 36 1 2.1741 -5.2034 -2.1240 37 1 2.3333 -6.4181 0.0229 38 1 3.6605 -5.2407 -0.1275 39 1 2.7043 -5.0720 2.1205 40 1 1.0677 -4.8735 1.4430 41 1 2.1355 -4.1488 4.7553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532718082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:42 Heat of formation + Delta-G solvation = 80.728577 kcal Electronic energy + Delta-G solvation = -23218.642707 eV Core-core repulsion = 20099.047682 eV Total energy + Delta-G solvation = -3119.595026 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.154 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.07430 -39.39325 -37.98217 -35.16357 -34.89533 -32.90198 -31.75445 -31.31586 -29.50048 -27.80423 -27.22682 -24.90628 -23.83828 -23.02268 -22.53470 -21.12315 -20.55354 -18.58288 -18.16045 -17.79049 -17.15903 -16.49311 -16.25420 -15.69517 -15.37141 -15.02940 -14.93198 -14.90360 -14.54304 -14.34911 -14.08619 -14.01243 -13.54922 -13.28264 -12.95184 -12.78579 -12.73447 -12.49272 -12.32510 -12.23412 -12.07651 -11.97593 -11.57291 -11.39908 -11.20759 -11.07767 -10.60704 -10.53266 -9.15440 -8.91474 -8.61784 -7.87184 -5.32094 0.08619 0.66309 1.35975 1.37636 1.45492 1.73034 1.93907 2.48371 3.00262 3.27978 3.33898 3.54250 3.72757 3.90899 4.07887 4.14627 4.19159 4.20188 4.31249 4.38353 4.42792 4.55928 4.56572 4.58783 4.63221 4.77390 4.86204 4.94694 5.04396 5.13672 5.21704 5.26484 5.31560 5.39897 5.56680 5.61649 5.64282 5.71172 5.77561 5.85901 6.09862 6.28083 6.45910 7.12215 7.20237 7.84164 8.35010 9.18875 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.007436 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.775854 B = 3764.431955 C = 4901.350583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.494 5.494 3 C 0.023 3.977 4 C -0.113 4.113 5 C -0.104 4.104 6 C -0.125 4.125 7 C -0.094 4.094 8 C 0.004 3.996 9 N -0.513 5.513 10 C 0.303 3.697 11 C 0.244 3.756 12 H 0.051 0.949 13 C -0.114 4.114 14 C -0.100 4.100 15 C -0.136 4.136 16 C 0.180 3.820 17 N -0.593 5.593 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.047 4.047 21 N -0.931 5.931 22 Si 0.948 3.052 23 H -0.290 1.290 24 H -0.286 1.286 25 H -0.284 1.284 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.147 0.853 30 H 0.167 0.833 31 H 0.158 0.842 32 H 0.121 0.879 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.009 0.991 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 9.854 -11.748 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.184 5.184 3 C -0.087 4.087 4 C -0.133 4.133 5 C -0.123 4.123 6 C -0.145 4.145 7 C -0.113 4.113 8 C -0.115 4.115 9 N -0.232 5.232 10 C 0.037 3.963 11 C 0.136 3.864 12 H 0.068 0.932 13 C -0.154 4.154 14 C -0.137 4.137 15 C -0.175 4.175 16 C 0.055 3.945 17 N -0.318 5.318 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.242 4.242 21 N -0.578 5.578 22 Si 0.777 3.223 23 H -0.217 1.217 24 H -0.212 1.212 25 H -0.210 1.210 26 H 0.086 0.914 27 H 0.132 0.868 28 H 0.117 0.883 29 H 0.164 0.836 30 H 0.185 0.815 31 H 0.176 0.824 32 H 0.139 0.861 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.712 9.257 -11.586 15.287 hybrid contribution 0.120 0.367 1.350 1.404 sum -3.592 9.624 -10.236 14.501 Atomic orbital electron populations 1.22210 0.74408 1.06189 1.03868 1.45393 1.08365 1.04454 1.60174 1.19311 0.91003 0.90585 1.07765 1.20319 1.01442 0.87401 1.04179 1.21292 0.91117 1.00669 0.99266 1.20972 0.98593 0.93718 1.01204 1.20259 0.96866 0.92875 1.01322 1.19754 0.94162 0.90636 1.06925 1.70409 1.18898 1.11193 1.22717 1.23626 0.85266 0.91068 0.96320 1.19181 0.95035 0.82011 0.90138 0.93188 1.21882 1.01054 0.96830 0.95651 1.21371 1.00372 0.93832 0.98158 1.22064 0.99569 0.99468 0.96381 1.20642 0.96742 0.81863 0.95209 1.44071 1.61548 1.03608 1.22550 1.19707 1.19427 1.11219 0.87118 0.91110 1.25635 0.99502 1.00913 0.98111 1.70127 1.34453 1.37206 1.15992 0.85647 0.80268 0.77500 0.78860 1.21666 1.21176 1.21016 0.91409 0.86841 0.88260 0.83563 0.81528 0.82450 0.86089 0.93240 0.90502 0.91339 0.90022 0.90709 0.93923 0.93225 0.97282 0.94353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.87 10.79 127.77 1.38 3.25 16 2 N -0.49 -18.03 3.21 -528.84 -1.70 -19.73 16 3 C 0.02 0.82 6.87 38.86 0.27 1.09 16 4 C -0.11 -3.01 10.05 22.32 0.22 -2.79 16 5 C -0.10 -2.34 10.03 22.31 0.22 -2.12 16 6 C -0.12 -3.16 9.96 22.02 0.22 -2.94 16 7 C -0.09 -3.22 10.05 22.25 0.22 -3.00 16 8 C 0.00 0.16 7.23 39.45 0.29 0.45 16 9 N -0.51 -24.35 9.18 -179.97 -1.65 -26.00 16 10 C 0.30 13.16 5.47 137.92 0.75 13.92 16 11 C 0.24 10.30 3.26 44.22 0.14 10.44 16 12 H 0.05 1.99 6.71 -2.38 -0.02 1.98 16 13 C -0.11 -4.04 5.35 30.67 0.16 -3.87 16 14 C -0.10 -3.09 5.89 30.62 0.18 -2.91 16 15 C -0.14 -5.08 6.08 30.66 0.19 -4.89 16 16 C 0.18 8.69 5.27 86.35 0.45 9.15 16 17 N -0.59 -30.42 2.98 -679.45 -2.02 -32.45 16 18 C -0.24 -14.25 8.73 84.03 0.73 -13.52 16 19 H 0.07 4.36 5.33 -2.91 -0.02 4.34 16 20 C -0.05 -2.76 4.95 84.86 0.42 -2.34 16 21 N -0.93 -56.23 11.27 21.65 0.24 -55.99 16 22 Si 0.95 49.08 29.58 68.60 2.03 51.11 16 23 H -0.29 -15.09 7.11 99.48 0.71 -14.39 16 24 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.28 -14.57 7.11 99.48 0.71 -13.86 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.10 2.21 7.06 -2.38 -0.02 2.19 16 29 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 30 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 32 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.04 1.70 8.14 -2.38 -0.02 1.69 16 39 H 0.05 2.75 6.22 -2.39 -0.01 2.73 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -75.47 326.66 3.78 -71.69 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.02 Total: 11.45 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 5.86 Total: -0.08 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -5.13 Total: -134.17 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.03 Total: 51.11 kcal Total: -75.47 3.78 -71.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532718082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.417 kcal (2) G-P(sol) polarization free energy of solvation -75.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds