Wall clock time and date at job start Tue Mar 31 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81401 * 102.99929 * 2 1 4 4 C 1.52997 * 109.47156 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46922 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46922 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47382 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99658 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00452 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.63302 * 180.02562 * 9 7 6 11 11 C 1.53191 * 108.89109 * 233.67613 * 10 9 7 12 12 C 1.53035 * 109.31327 * 305.29292 * 11 10 9 13 13 C 1.50709 * 109.45964 * 181.37529 * 12 11 10 14 14 H 1.07997 * 119.99916 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99864 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00107 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99894 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47199 * 90.00447 * 17 15 13 19 19 H 1.48500 * 109.47216 * 210.00118 * 17 15 13 20 20 H 1.48493 * 109.47310 * 329.99864 * 17 15 13 21 21 C 1.53038 * 109.54175 * 61.36680 * 12 11 10 22 22 C 1.47207 * 120.81153 * 0.14103 * 9 7 6 23 23 H 1.09003 * 109.47159 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47000 * 299.99941 * 1 2 3 25 25 H 1.08993 * 109.47571 * 60.00194 * 1 2 3 26 26 H 1.09001 * 109.46795 * 59.99692 * 3 2 1 27 27 H 1.09003 * 109.46638 * 300.00275 * 3 2 1 28 28 H 1.08998 * 109.47350 * 59.99621 * 4 3 2 29 29 H 1.08996 * 109.46626 * 299.99727 * 4 3 2 30 30 H 1.08998 * 109.47498 * 59.99612 * 5 4 3 31 31 H 1.09004 * 109.46843 * 299.99247 * 5 4 3 32 32 H 1.08998 * 109.47350 * 59.99522 * 6 5 4 33 33 H 1.09003 * 109.47457 * 299.99533 * 6 5 4 34 34 H 1.09002 * 109.58861 * 113.81616 * 10 9 7 35 35 H 1.08996 * 109.58519 * 353.53507 * 10 9 7 36 36 H 1.09003 * 109.49975 * 65.24379 * 11 10 9 37 37 H 1.09000 * 109.49553 * 185.30642 * 11 10 9 38 38 H 1.09004 * 109.45942 * 301.34050 * 12 11 10 39 39 H 0.97004 * 120.00396 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.49557 * 58.58503 * 21 12 11 41 41 H 1.08996 * 109.50003 * 178.68400 * 21 12 11 42 42 H 1.08996 * 109.53610 * 6.53712 * 22 9 7 43 43 H 1.09002 * 109.68003 * 246.23180 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0864 3.4308 0.0000 6 6 5.6066 3.6033 -0.0013 7 6 5.9456 5.0716 -0.0013 8 8 5.0586 5.8987 0.0001 9 7 7.2345 5.4657 -0.0018 10 6 7.5807 6.8936 -0.0013 11 6 8.5313 7.1739 -1.1694 12 6 9.7381 6.2375 -1.0758 13 6 10.6920 6.5335 -2.2045 14 1 10.4604 7.3111 -2.9172 15 6 11.8601 5.8115 -2.3270 16 7 12.1423 4.8649 -1.4587 17 14 13.0421 6.1779 -3.7263 18 1 14.0177 7.2101 -3.2928 19 1 13.7674 4.9369 -4.0994 20 1 12.2808 6.6778 -4.8992 21 6 9.2675 4.7846 -1.1741 22 6 8.3252 4.4772 -0.0055 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8031 2.2371 0.8900 27 1 1.8030 2.2371 -0.8900 28 1 4.1609 1.4704 -0.8908 29 1 4.1615 1.4703 0.8891 30 1 3.6678 3.9000 0.8904 31 1 3.6671 3.9008 -0.8896 32 1 6.0248 3.1342 -0.8919 33 1 6.0264 3.1332 0.8880 34 1 8.0703 7.1506 0.9381 35 1 6.6751 7.4892 -0.1160 36 1 8.0104 7.0029 -2.1115 37 1 8.8690 8.2093 -1.1232 38 1 10.2443 6.3917 -0.1228 39 1 12.9643 4.3572 -1.5447 40 1 8.7396 4.6362 -2.1161 41 1 10.1297 4.1192 -1.1308 42 1 7.9098 3.4765 -0.1244 43 1 8.8761 4.5349 0.9333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541976576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:56 Heat of formation + Delta-G solvation = -68.837477 kcal Electronic energy + Delta-G solvation = -20330.831274 eV Core-core repulsion = 17307.901778 eV Total energy + Delta-G solvation = -3022.929496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.150 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.71598 -36.96445 -35.46176 -33.51489 -31.63817 -30.54500 -29.88055 -29.23687 -26.39886 -24.81617 -22.83306 -22.26573 -21.29230 -19.73843 -18.21527 -16.88118 -16.45066 -16.16692 -16.09141 -15.34962 -14.96661 -14.57083 -14.28765 -13.94462 -13.80498 -13.36683 -13.19534 -13.11559 -12.95443 -12.68412 -12.48863 -12.25195 -11.73248 -11.55383 -11.36653 -11.28664 -11.17744 -10.96279 -10.73131 -10.64610 -10.39717 -10.27088 -10.11944 -9.68392 -9.38044 -9.18627 -8.94215 -8.40006 -8.00777 -7.98942 -6.05447 -4.11514 1.37205 2.29549 3.00020 3.26802 3.33994 3.37457 3.48359 4.39123 4.53481 4.62899 4.76249 4.77792 4.80485 5.10195 5.18271 5.23277 5.24972 5.33353 5.46565 5.55292 5.56912 5.73006 5.77921 5.81419 5.95241 6.06916 6.11672 6.14857 6.23793 6.28408 6.44390 6.64450 6.88079 7.01965 7.12866 7.25658 7.64268 7.89419 7.93653 8.01689 8.37910 8.57230 8.91921 9.53748 11.00106 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.026691 B = 0.002754 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.776641 B =10162.905273 C =10826.583370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.272 6.272 3 C -0.081 4.081 4 C -0.105 4.105 5 C -0.096 4.096 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.563 6.563 9 N -0.602 5.602 10 C 0.111 3.889 11 C -0.123 4.123 12 C 0.048 3.952 13 C -0.512 4.512 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.124 4.124 22 C 0.103 3.897 23 H 0.099 0.901 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.260 0.740 40 H 0.039 0.961 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.138 -7.900 4.583 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.047 6.047 3 C -0.229 4.229 4 C -0.144 4.144 5 C -0.136 4.136 6 C -0.179 4.179 7 C 0.298 3.702 8 O -0.443 6.443 9 N -0.334 5.334 10 C -0.011 4.011 11 C -0.161 4.161 12 C 0.030 3.970 13 C -0.550 4.550 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.163 4.163 22 C -0.019 4.019 23 H 0.118 0.882 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.794 -8.488 4.623 19.377 hybrid contribution 0.000 1.099 -0.786 1.351 sum -16.794 -7.390 3.838 18.745 Atomic orbital electron populations 1.23360 0.94303 1.06408 1.04886 1.86963 1.07277 1.12317 1.98093 1.23434 1.00908 0.93427 1.05119 1.21371 0.92135 0.97257 1.03591 1.21299 0.94328 0.94323 1.03667 1.21660 0.97680 0.94082 1.04450 1.20582 0.82297 0.91136 0.76143 1.90628 1.46839 1.54955 1.51867 1.48342 1.05592 1.08093 1.71353 1.21675 0.99325 0.80749 0.99401 1.22002 0.97328 1.00586 0.96209 1.18638 0.90843 0.90018 0.97543 1.21208 1.03733 1.18290 1.11759 0.92708 1.24959 0.97809 0.95093 0.96127 1.69831 1.25003 1.22420 1.35862 0.86612 0.81135 0.77722 0.82651 1.20715 1.21229 1.19989 1.22028 0.98010 1.02440 0.93811 1.22107 0.88273 0.90265 1.01280 0.88187 0.90551 0.90519 0.89982 0.89941 0.90745 0.90843 0.91148 0.91069 0.88776 0.89042 0.92326 0.90456 0.93009 0.92185 0.95472 0.92959 0.94237 0.87720 0.91365 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.76 101.05 1.09 0.31 16 2 S -0.27 -2.57 22.38 -107.50 -2.41 -4.98 16 3 C -0.08 -0.70 5.94 37.16 0.22 -0.48 16 4 C -0.10 -0.97 5.22 -26.73 -0.14 -1.11 16 5 C -0.10 -1.07 4.50 -26.73 -0.12 -1.19 16 6 C -0.14 -1.72 4.05 -27.88 -0.11 -1.83 16 7 C 0.51 8.58 7.70 -10.99 -0.08 8.50 16 8 O -0.56 -11.03 15.39 5.55 0.09 -10.94 16 9 N -0.60 -10.63 2.98 -172.52 -0.51 -11.15 16 10 C 0.11 2.03 6.42 -3.71 -0.02 2.01 16 11 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 12 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 13 C -0.51 -13.54 8.56 -34.44 -0.29 -13.83 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -24.22 11.31 55.43 0.63 -23.59 16 17 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.12 -2.69 5.16 -26.59 -0.14 -2.82 16 22 C 0.10 1.78 6.35 -3.54 -0.02 1.75 16 23 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 24 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.82 8.10 -51.93 -0.42 0.39 16 31 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.09 1.10 7.70 -51.93 -0.40 0.70 16 33 H 0.09 0.99 7.95 -51.93 -0.41 0.57 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.10 2.51 6.03 -51.93 -0.31 2.20 16 42 H 0.07 0.98 5.97 -51.93 -0.31 0.67 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -29.09 353.01 -9.64 -38.73 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.68 Total: -0.22 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -0.05 Total: -8.88 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.11 Total: -34.74 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.41 Total: -4.98 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.09 -9.64 -38.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541976576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.110 kcal (2) G-P(sol) polarization free energy of solvation -29.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds