Wall clock time and date at job start Tue Mar 31 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81401 * 102.99929 * 2 1 4 4 C 1.52997 * 109.47156 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46922 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46922 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47382 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99658 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00452 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.63302 * 180.02562 * 9 7 6 11 11 C 1.53191 * 108.89109 * 233.67613 * 10 9 7 12 12 C 1.53035 * 109.31327 * 305.29292 * 11 10 9 13 13 C 1.50709 * 109.45964 * 181.37529 * 12 11 10 14 14 H 1.07997 * 119.99916 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99864 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00107 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99894 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47199 * 90.00447 * 17 15 13 19 19 H 1.48500 * 109.47216 * 210.00118 * 17 15 13 20 20 H 1.48493 * 109.47310 * 329.99864 * 17 15 13 21 21 C 1.53038 * 109.54175 * 61.36680 * 12 11 10 22 22 C 1.47207 * 120.81153 * 0.14103 * 9 7 6 23 23 H 1.09003 * 109.47159 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47000 * 299.99941 * 1 2 3 25 25 H 1.08993 * 109.47571 * 60.00194 * 1 2 3 26 26 H 1.09001 * 109.46795 * 59.99692 * 3 2 1 27 27 H 1.09003 * 109.46638 * 300.00275 * 3 2 1 28 28 H 1.08998 * 109.47350 * 59.99621 * 4 3 2 29 29 H 1.08996 * 109.46626 * 299.99727 * 4 3 2 30 30 H 1.08998 * 109.47498 * 59.99612 * 5 4 3 31 31 H 1.09004 * 109.46843 * 299.99247 * 5 4 3 32 32 H 1.08998 * 109.47350 * 59.99522 * 6 5 4 33 33 H 1.09003 * 109.47457 * 299.99533 * 6 5 4 34 34 H 1.09002 * 109.58861 * 113.81616 * 10 9 7 35 35 H 1.08996 * 109.58519 * 353.53507 * 10 9 7 36 36 H 1.09003 * 109.49975 * 65.24379 * 11 10 9 37 37 H 1.09000 * 109.49553 * 185.30642 * 11 10 9 38 38 H 1.09004 * 109.45942 * 301.34050 * 12 11 10 39 39 H 0.97004 * 120.00396 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.49557 * 58.58503 * 21 12 11 41 41 H 1.08996 * 109.50003 * 178.68400 * 21 12 11 42 42 H 1.08996 * 109.53610 * 6.53712 * 22 9 7 43 43 H 1.09002 * 109.68003 * 246.23180 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0864 3.4308 0.0000 6 6 5.6066 3.6033 -0.0013 7 6 5.9456 5.0716 -0.0013 8 8 5.0586 5.8987 0.0001 9 7 7.2345 5.4657 -0.0018 10 6 7.5807 6.8936 -0.0013 11 6 8.5313 7.1739 -1.1694 12 6 9.7381 6.2375 -1.0758 13 6 10.6920 6.5335 -2.2045 14 1 10.4604 7.3111 -2.9172 15 6 11.8601 5.8115 -2.3270 16 7 12.1423 4.8649 -1.4587 17 14 13.0421 6.1779 -3.7263 18 1 14.0177 7.2101 -3.2928 19 1 13.7674 4.9369 -4.0994 20 1 12.2808 6.6778 -4.8992 21 6 9.2675 4.7846 -1.1741 22 6 8.3252 4.4772 -0.0055 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8031 2.2371 0.8900 27 1 1.8030 2.2371 -0.8900 28 1 4.1609 1.4704 -0.8908 29 1 4.1615 1.4703 0.8891 30 1 3.6678 3.9000 0.8904 31 1 3.6671 3.9008 -0.8896 32 1 6.0248 3.1342 -0.8919 33 1 6.0264 3.1332 0.8880 34 1 8.0703 7.1506 0.9381 35 1 6.6751 7.4892 -0.1160 36 1 8.0104 7.0029 -2.1115 37 1 8.8690 8.2093 -1.1232 38 1 10.2443 6.3917 -0.1228 39 1 12.9643 4.3572 -1.5447 40 1 8.7396 4.6362 -2.1161 41 1 10.1297 4.1192 -1.1308 42 1 7.9098 3.4765 -0.1244 43 1 8.8761 4.5349 0.9333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541976576.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:56 Heat of formation + Delta-G solvation = -83.095412 kcal Electronic energy + Delta-G solvation = -20331.449545 eV Core-core repulsion = 17307.901778 eV Total energy + Delta-G solvation = -3023.547767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.10465 -38.49578 -36.37919 -35.30795 -33.22216 -31.97028 -31.14749 -29.76379 -28.09473 -26.00304 -24.42386 -23.76193 -22.23015 -21.27844 -19.67427 -18.56524 -17.81591 -17.19690 -17.06117 -16.70965 -16.45970 -16.03734 -15.03942 -14.96809 -14.82468 -14.79802 -14.50109 -14.37712 -14.08591 -13.92723 -13.64557 -13.56091 -13.21154 -13.08566 -12.81938 -12.47703 -12.39811 -12.20413 -12.12974 -12.09710 -11.86498 -11.56057 -11.47008 -11.00175 -10.95619 -10.91909 -10.63151 -10.38521 -9.52168 -8.69431 -8.07889 -6.20872 0.74659 1.41168 1.43516 1.52171 1.68320 1.68824 2.14710 2.44145 3.18675 3.57725 3.77953 3.92074 4.11506 4.25181 4.27966 4.32904 4.33159 4.34419 4.40737 4.47047 4.51488 4.58246 4.69461 4.73683 4.76063 4.82175 4.88538 4.89604 4.99405 5.01182 5.19207 5.26558 5.26642 5.39754 5.44523 5.57224 5.66338 5.99346 6.14794 6.39820 6.56411 6.88396 7.22431 7.46755 8.95494 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.026691 B = 0.002754 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.776641 B =10162.905273 C =10826.583370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.321 6.321 3 C -0.073 4.073 4 C -0.096 4.096 5 C -0.088 4.088 6 C -0.134 4.134 7 C 0.506 3.494 8 O -0.592 6.592 9 N -0.607 5.607 10 C 0.116 3.884 11 C -0.113 4.113 12 C 0.044 3.956 13 C -0.535 4.535 14 H 0.046 0.954 15 C 0.018 3.982 16 N -0.911 5.911 17 Si 0.948 3.052 18 H -0.278 1.278 19 H -0.281 1.281 20 H -0.274 1.274 21 C -0.116 4.116 22 C 0.114 3.886 23 H 0.110 0.890 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.061 0.939 38 H 0.003 0.997 39 H 0.262 0.738 40 H 0.028 0.972 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.114 -8.880 4.810 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.095 6.095 3 C -0.221 4.221 4 C -0.135 4.135 5 C -0.128 4.128 6 C -0.174 4.174 7 C 0.297 3.703 8 O -0.474 6.474 9 N -0.339 5.339 10 C -0.007 4.007 11 C -0.151 4.151 12 C 0.026 3.974 13 C -0.573 4.573 14 H 0.064 0.936 15 C -0.181 4.181 16 N -0.550 5.550 17 Si 0.774 3.226 18 H -0.204 1.204 19 H -0.207 1.207 20 H -0.199 1.199 21 C -0.155 4.155 22 C -0.008 4.008 23 H 0.128 0.872 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.021 0.979 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.775 -9.474 4.853 20.719 hybrid contribution 0.275 1.435 -0.862 1.696 sum -17.500 -8.039 3.991 19.668 Atomic orbital electron populations 1.23412 0.91298 1.07391 1.05751 1.87096 1.10744 1.13449 1.98211 1.23375 1.00523 0.92619 1.05558 1.21272 0.92639 0.95732 1.03842 1.21205 0.93343 0.95432 1.02834 1.21738 0.98738 0.90773 1.06115 1.21355 0.81340 0.92830 0.74782 1.90615 1.47466 1.56319 1.53026 1.48413 1.06207 1.07656 1.71643 1.21539 0.98706 0.81772 0.98689 1.21846 0.96530 1.00027 0.96742 1.18619 0.91401 0.92132 0.95269 1.21543 1.04934 1.18296 1.12559 0.93614 1.25618 0.99213 0.95045 0.98216 1.69938 1.25340 1.22830 1.36912 0.85716 0.79194 0.77630 0.80047 1.20386 1.20684 1.19898 1.21801 0.97998 1.00430 0.95285 1.21985 0.87599 0.91848 0.99357 0.87164 0.89597 0.89735 0.89360 0.89687 0.90769 0.90297 0.91673 0.92283 0.87553 0.86620 0.91394 0.90393 0.94113 0.92013 0.97890 0.92880 0.95274 0.90126 0.87744 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.76 113.37 1.22 0.03 16 2 S -0.32 -5.60 22.38 -56.49 -1.26 -6.86 16 3 C -0.07 -1.13 5.94 71.98 0.43 -0.70 16 4 C -0.10 -1.57 5.22 30.59 0.16 -1.42 16 5 C -0.09 -1.78 4.50 30.59 0.14 -1.64 16 6 C -0.13 -2.96 4.05 29.85 0.12 -2.84 16 7 C 0.51 16.14 7.70 87.66 0.68 16.82 16 8 O -0.59 -22.57 15.39 -3.04 -0.05 -22.62 16 9 N -0.61 -20.56 2.98 -818.12 -2.44 -23.00 16 10 C 0.12 4.16 6.42 86.36 0.55 4.72 16 11 C -0.11 -4.66 5.30 30.67 0.16 -4.50 16 12 C 0.04 2.11 2.06 -11.51 -0.02 2.09 16 13 C -0.54 -28.75 8.56 25.60 0.22 -28.53 16 14 H 0.05 2.47 7.74 -2.91 -0.02 2.45 16 15 C 0.02 0.97 5.30 84.65 0.45 1.42 16 16 N -0.91 -49.76 11.31 21.45 0.24 -49.51 16 17 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 C -0.12 -5.01 5.16 30.68 0.16 -4.86 16 22 C 0.11 3.74 6.35 86.32 0.55 4.29 16 23 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 31 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 32 H 0.11 2.15 7.70 -2.39 -0.02 2.14 16 33 H 0.12 2.05 7.95 -2.39 -0.02 2.03 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.08 2.81 7.00 -2.39 -0.02 2.80 16 36 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.00 0.15 8.14 -2.39 -0.02 0.14 16 39 H 0.26 13.65 8.31 -92.70 -0.77 12.88 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 3.89 6.03 -2.39 -0.01 3.88 16 42 H 0.10 2.68 5.97 -2.39 -0.01 2.67 16 43 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -62.54 353.01 4.28 -58.27 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.95 Total: 14.21 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 4.81 Total: -15.12 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -2.20 Total: -72.52 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.05 Total: -22.62 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: -5.60 SS G_CDS: -1.26 Total: -6.86 kcal Total: -62.54 4.28 -58.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541976576.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.830 kcal (2) G-P(sol) polarization free energy of solvation -62.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds