Wall clock time and date at job start Tue Mar 31 2020 05:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 119.99984 * 2 1 4 4 N 1.46903 * 109.47389 * 124.14175 * 3 2 1 5 5 C 1.46902 * 110.99902 * 301.48406 * 4 3 2 6 6 C 1.50691 * 109.47266 * 288.40605 * 5 4 3 7 7 H 1.08011 * 119.99912 * 354.86266 * 6 5 4 8 8 C 1.37877 * 120.00109 * 174.86559 * 6 5 4 9 9 N 1.31510 * 119.99723 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00022 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47124 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47351 * 119.99523 * 10 8 6 13 13 H 1.48501 * 109.47121 * 239.99770 * 10 8 6 14 14 C 1.46904 * 110.99736 * 65.43716 * 4 3 2 15 15 C 1.50706 * 109.47055 * 66.04644 * 14 4 3 16 16 N 1.30246 * 126.10415 * 89.97511 * 15 14 4 17 17 N 1.39868 * 110.08075 * 179.97438 * 16 15 14 18 18 C 1.46500 * 125.45871 * 179.97438 * 17 16 15 19 19 C 1.37031 * 109.08282 * 359.97438 * 17 16 15 20 20 C 1.39291 * 133.85229 * 180.02562 * 19 17 16 21 21 C 1.36587 * 119.85203 * 179.97438 * 20 19 17 22 22 C 1.38971 * 120.81544 * 359.97438 * 21 20 19 23 23 C 1.36458 * 120.62827 * 359.97438 * 22 21 20 24 24 C 1.39945 * 119.63797 * 0.27318 * 23 22 21 25 25 H 1.08001 * 120.00344 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.00227 * 0.02562 * 1 2 3 27 27 H 1.07993 * 119.99930 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47386 * 4.14249 * 3 2 1 29 29 H 1.08998 * 109.47256 * 244.14126 * 3 2 1 30 30 H 1.09004 * 109.46945 * 48.40951 * 5 4 3 31 31 H 1.08997 * 109.47040 * 168.40340 * 5 4 3 32 32 H 0.97008 * 119.99818 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47077 * 306.05031 * 14 4 3 34 34 H 1.09003 * 109.47048 * 186.04810 * 14 4 3 35 35 H 1.09009 * 109.47283 * 270.02561 * 18 17 16 36 36 H 1.09004 * 109.47225 * 30.01927 * 18 17 16 37 37 H 1.08998 * 109.47807 * 150.02659 * 18 17 16 38 38 H 1.08000 * 120.07364 * 0.02562 * 20 19 17 39 39 H 1.07993 * 119.59395 * 180.02562 * 21 20 19 40 40 H 1.07997 * 119.68343 * 180.02562 * 22 21 20 41 41 H 1.08002 * 120.18302 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9815 1.3406 1.1463 5 6 2.2506 1.1854 2.4111 6 6 1.4657 2.4401 2.6949 7 1 1.5700 3.2999 2.0495 8 6 0.6146 2.4906 3.7784 9 7 0.4873 1.4436 4.5639 10 14 -0.3589 4.0457 4.1297 11 1 -0.0396 5.0718 3.1047 12 1 -1.8116 3.7402 4.0891 13 1 0.0010 4.5617 5.4748 14 6 4.0282 0.3183 1.0143 15 6 4.9099 0.6511 -0.1617 16 7 5.9870 1.3828 -0.1306 17 7 6.5435 1.4729 -1.4107 18 6 7.7584 2.2137 -1.7590 19 6 5.7702 0.7572 -2.2868 20 6 5.8448 0.5027 -3.6542 21 6 4.8935 -0.2720 -4.2545 22 6 3.8471 -0.8135 -3.5174 23 6 3.7489 -0.5821 -2.1762 24 6 4.7083 0.2128 -1.5390 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5401 0.9353 -0.0004 27 1 1.8499 -0.9353 0.0004 28 1 1.3575 2.1323 0.0742 29 1 2.6333 1.3957 -0.9247 30 1 1.5679 0.3392 2.3347 31 1 2.9588 1.0090 3.2207 32 1 -0.1118 1.4790 5.3260 33 1 3.5663 -0.6565 0.8576 34 1 4.6289 0.2938 1.9235 35 1 7.4951 3.2359 -2.0314 36 1 8.4331 2.2282 -0.9030 37 1 8.2509 1.7286 -2.6017 38 1 6.6535 0.9165 -4.2383 39 1 4.9556 -0.4670 -5.3149 40 1 3.1052 -1.4238 -4.0107 41 1 2.9329 -1.0068 -1.6103 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590050710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:26 Heat of formation + Delta-G solvation = 121.427855 kcal Electronic energy + Delta-G solvation = -22348.373209 eV Core-core repulsion = 19230.543037 eV Total energy + Delta-G solvation = -3117.830172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.154 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17972 -37.44449 -37.09790 -33.66048 -32.78987 -31.90478 -30.35836 -29.72873 -28.32518 -26.64525 -25.49078 -23.71179 -22.79566 -21.75523 -21.02992 -19.64848 -18.74388 -16.89278 -16.71086 -16.13184 -15.59602 -15.23651 -15.08439 -14.62259 -14.28337 -14.04670 -13.84326 -13.73358 -13.43571 -12.92181 -12.72092 -12.15873 -12.07416 -11.92695 -11.63617 -11.54175 -11.18197 -11.04235 -10.85959 -10.66843 -10.58010 -10.44974 -10.31449 -9.94807 -9.74839 -9.22488 -8.69440 -8.52862 -8.37028 -7.74928 -7.23144 -5.97338 -3.97453 1.04718 1.57824 2.50412 2.65338 2.92826 3.33910 3.41558 3.46914 3.85792 4.45988 4.50759 4.58631 4.75596 4.99216 5.10322 5.17010 5.22026 5.31321 5.37272 5.38613 5.41544 5.55741 5.65444 5.71940 5.85275 5.94003 6.05148 6.16364 6.22626 6.41622 6.45764 6.57210 6.64067 6.72565 6.91208 7.14837 7.18045 7.26288 7.36309 7.46336 7.85516 7.88953 8.11254 8.21406 8.57008 9.10304 9.66063 11.13269 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.004569 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.538902 B = 6127.414706 C = 6884.966180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.182 4.182 3 C 0.088 3.912 4 N -0.521 5.521 5 C 0.191 3.809 6 C -0.499 4.499 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.126 3.874 15 C 0.125 3.875 16 N -0.239 5.239 17 N -0.417 5.417 18 C 0.114 3.886 19 C 0.125 3.875 20 C -0.147 4.147 21 C -0.073 4.073 22 C -0.168 4.168 23 C -0.034 4.034 24 C -0.169 4.169 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.010 0.990 31 H 0.025 0.975 32 H 0.259 0.741 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.702 -4.733 -16.889 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.201 4.201 3 C -0.041 4.041 4 N -0.245 5.245 5 C 0.066 3.934 6 C -0.538 4.538 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.004 4.004 15 C -0.053 4.053 16 N -0.051 5.051 17 N -0.204 5.204 18 C -0.027 4.027 19 C 0.010 3.990 20 C -0.169 4.169 21 C -0.094 4.094 22 C -0.188 4.188 23 C -0.054 4.054 24 C -0.177 4.177 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.027 0.973 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.840 -3.496 -15.986 19.628 hybrid contribution -1.374 -0.371 -0.216 1.439 sum 9.466 -3.867 -16.202 19.158 Atomic orbital electron populations 1.23695 0.95999 1.01162 1.00410 1.23501 0.96682 0.99584 1.00357 1.21308 0.94662 0.94418 0.93663 1.62402 1.12872 1.44726 1.04492 1.19816 0.92323 0.97320 0.83929 1.21137 1.22948 0.98958 1.10746 0.91994 1.24936 0.97002 0.96290 0.96202 1.69965 1.38224 1.29123 1.16514 0.86508 0.79625 0.83522 0.78171 1.19723 1.21182 1.21106 1.20469 0.92512 0.94501 0.92944 1.23663 0.93463 0.94436 0.93771 1.76693 1.11136 1.17921 0.99389 1.48188 1.23530 1.44808 1.03873 1.21651 0.83668 0.95644 1.01770 1.18852 0.92613 0.95041 0.92455 1.19729 1.02105 1.04448 0.90628 1.20648 0.93572 0.95644 0.99516 1.20609 1.00068 1.04077 0.94028 1.20555 0.96213 0.94303 0.94377 1.19859 0.98779 1.05994 0.93094 0.89631 0.88485 0.88583 0.89891 0.91792 0.97260 0.95702 0.93108 0.93115 0.89346 0.91505 0.89588 0.90281 0.86255 0.85779 0.85887 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 14.32 29.02 0.42 -2.61 16 2 C -0.18 -3.21 6.31 -36.03 -0.23 -3.44 16 3 C 0.09 1.72 5.39 -4.97 -0.03 1.69 16 4 N -0.52 -11.34 4.65 -238.96 -1.11 -12.45 16 5 C 0.19 4.88 4.57 -4.98 -0.02 4.86 16 6 C -0.50 -13.98 8.54 -34.44 -0.29 -14.27 16 7 H 0.06 1.76 7.64 -52.48 -0.40 1.36 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 10 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.13 2.36 5.41 -4.97 -0.03 2.33 16 15 C 0.13 2.24 6.24 -80.19 -0.50 1.74 16 16 N -0.24 -4.35 12.40 34.84 0.43 -3.92 16 17 N -0.42 -6.27 4.05 -65.46 -0.27 -6.53 16 18 C 0.11 1.14 11.40 59.85 0.68 1.83 16 19 C 0.13 1.84 6.87 -84.17 -0.58 1.26 16 20 C -0.15 -1.70 9.97 -39.79 -0.40 -2.10 16 21 C -0.07 -0.77 9.96 -39.91 -0.40 -1.16 16 22 C -0.17 -1.92 9.97 -39.95 -0.40 -2.31 16 23 C -0.03 -0.47 9.18 -39.58 -0.36 -0.83 16 24 C -0.17 -2.69 5.25 -105.21 -0.55 -3.24 16 25 H 0.09 1.31 8.06 -52.49 -0.42 0.89 16 26 H 0.10 1.74 7.84 -52.48 -0.41 1.33 16 27 H 0.10 1.56 5.65 -52.49 -0.30 1.26 16 28 H 0.08 1.78 7.05 -51.93 -0.37 1.41 16 29 H 0.06 1.19 5.41 -51.93 -0.28 0.91 16 30 H 0.01 0.26 6.67 -51.93 -0.35 -0.09 16 31 H 0.02 0.68 7.82 -51.93 -0.41 0.28 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.05 0.88 6.40 -51.93 -0.33 0.55 16 34 H 0.09 1.68 7.87 -51.93 -0.41 1.27 16 35 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.13 1.69 5.58 -52.49 -0.29 1.39 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -32.18 336.94 -8.57 -40.75 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.64 Total: 0.83 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -2.78 Total: -14.75 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.21 Total: -48.68 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.18 -8.57 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590050710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.174 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds