Wall clock time and date at job start Tue Mar 31 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46943 * 2 1 4 4 H 1.08997 * 110.27629 * 304.35843 * 3 2 1 5 5 C 1.54952 * 110.39296 * 182.21790 * 3 2 1 6 6 C 1.55311 * 100.94163 * 204.59749 * 5 3 2 7 7 C 1.54380 * 102.25150 * 34.13232 * 6 5 3 8 8 H 1.08994 * 109.82999 * 98.16048 * 7 6 5 9 9 C 1.50696 * 109.82720 * 219.13187 * 7 6 5 10 10 O 1.21285 * 120.00200 * 109.90446 * 9 7 6 11 11 N 1.34784 * 120.00052 * 289.90540 * 9 7 6 12 12 C 1.46501 * 119.99769 * 4.99816 * 11 9 7 13 13 C 1.50699 * 109.46471 * 90.00487 * 12 11 9 14 14 H 1.07997 * 120.00542 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99576 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00027 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99773 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47406 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47123 * 120.00090 * 17 15 13 20 20 H 1.48501 * 109.46893 * 239.99388 * 17 15 13 21 21 C 1.46495 * 119.99894 * 185.00709 * 11 9 7 22 22 C 1.53005 * 109.47271 * 93.78879 * 21 11 9 23 23 O 1.42891 * 109.47332 * 65.73383 * 22 21 11 24 24 C 1.42903 * 113.99833 * 180.02562 * 23 22 21 25 25 O 1.43240 * 107.59162 * 338.64248 * 7 6 5 26 26 H 1.08998 * 109.46662 * 60.00038 * 1 2 3 27 27 H 1.08997 * 109.47339 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46798 * 300.00357 * 1 2 3 29 29 H 1.09000 * 109.47265 * 239.99842 * 2 1 3 30 30 H 1.08997 * 109.47405 * 119.99947 * 2 1 3 31 31 H 1.08994 * 111.12760 * 86.67600 * 5 3 2 32 32 H 1.09001 * 111.12396 * 322.51526 * 5 3 2 33 33 H 1.08994 * 110.84301 * 275.94062 * 6 5 3 34 34 H 1.09001 * 110.84357 * 152.31858 * 6 5 3 35 35 H 1.08995 * 109.46796 * 210.00360 * 12 11 9 36 36 H 1.08995 * 109.47189 * 330.00643 * 12 11 9 37 37 H 0.97008 * 119.99804 * 179.97438 * 16 15 13 38 38 H 1.09006 * 109.46817 * 213.78217 * 21 11 9 39 39 H 1.08997 * 109.47659 * 333.78518 * 21 11 9 40 40 H 1.09005 * 109.47080 * 185.73908 * 22 21 11 41 41 H 1.09002 * 109.46984 * 305.73118 * 22 21 11 42 42 H 1.08997 * 109.47125 * 60.00414 * 24 23 22 43 43 H 1.09004 * 109.46865 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.47090 * 299.99877 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6218 1.9910 -0.8440 5 6 3.5883 1.4679 -0.0562 6 6 3.8840 2.8507 0.5860 7 6 2.7551 2.9743 1.6318 8 1 3.1282 2.6860 2.6145 9 6 2.2483 4.3930 1.6716 10 8 1.1425 4.6541 1.2474 11 7 3.0240 5.3717 2.1787 12 6 4.3990 5.0776 2.5900 13 6 5.3286 5.2913 1.4233 14 1 4.9348 5.6142 0.4710 15 6 6.6822 5.0744 1.5718 16 7 7.1619 4.6817 2.7316 17 14 7.8347 5.3399 0.1259 18 1 7.0518 5.7787 -1.0572 19 1 8.8332 6.3825 0.4737 20 1 8.5353 4.0688 -0.1885 21 6 2.4919 6.7294 2.3188 22 6 1.9259 6.9125 3.7284 23 8 2.9879 6.8385 4.6816 24 6 2.5644 6.9974 6.0371 25 8 1.6988 2.0920 1.2350 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.9447 1.4285 -1.0855 32 1 4.0162 0.6597 0.5369 33 1 3.8141 3.6459 -0.1561 34 1 4.8615 2.8533 1.0683 35 1 4.6833 5.7404 3.4073 36 1 4.4651 4.0417 2.9224 37 1 8.1141 4.5288 2.8359 38 1 3.2910 7.4518 2.1515 39 1 1.7004 6.8870 1.5862 40 1 1.4395 7.8853 3.8012 41 1 1.1987 6.1267 3.9329 42 1 1.8509 6.2130 6.2892 43 1 3.4285 6.9291 6.6981 44 1 2.0911 7.9718 6.1580 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610687159.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:50 Heat of formation + Delta-G solvation = -137.367838 kcal Electronic energy + Delta-G solvation = -24325.381376 eV Core-core repulsion = 20856.727309 eV Total energy + Delta-G solvation = -3468.654067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.89971 -38.24710 -37.19537 -34.89190 -33.40850 -32.62291 -31.64038 -30.04427 -27.98398 -27.05341 -25.88843 -24.02147 -22.89160 -22.17873 -21.22635 -20.57776 -18.35688 -17.03975 -16.56125 -16.12052 -15.97792 -15.66287 -15.42538 -14.84540 -14.60430 -14.40547 -13.76470 -13.66605 -13.30121 -13.02931 -12.82340 -12.51089 -12.35751 -12.01730 -11.71980 -11.56444 -11.49171 -11.46019 -11.29336 -11.03973 -10.91107 -10.88195 -10.73633 -10.53378 -10.44388 -10.18951 -10.07116 -9.68780 -9.58239 -9.34510 -8.66315 -8.40026 -7.65581 -6.14409 -4.19910 3.21353 3.30765 3.33234 3.39650 3.73583 4.18355 4.32923 4.41032 4.92238 4.97291 5.18682 5.27688 5.33398 5.41809 5.44960 5.48851 5.54693 5.58806 5.67755 5.69861 5.73001 5.77347 5.88281 5.91822 6.02095 6.04433 6.10502 6.15988 6.16827 6.37138 6.40220 6.46147 6.68482 6.81596 6.90147 7.27654 7.46356 7.50973 7.65509 7.83211 8.11910 8.40341 8.83611 9.07141 9.45290 10.91901 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.010752 B = 0.007283 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.535163 B = 3843.383903 C = 5835.410011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.066 0.934 5 C -0.156 4.156 6 C -0.126 4.126 7 C 0.074 3.926 8 H 0.100 0.900 9 C 0.505 3.495 10 O -0.566 6.566 11 N -0.587 5.587 12 C 0.236 3.764 13 C -0.530 4.530 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.888 5.888 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.120 3.880 22 C 0.048 3.952 23 O -0.374 6.374 24 C 0.033 3.967 25 O -0.356 6.356 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.053 0.947 36 H 0.033 0.967 37 H 0.263 0.737 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.035 0.965 43 H 0.083 0.917 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.379 -3.492 -0.272 8.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C 0.020 3.980 4 H 0.084 0.916 5 C -0.194 4.194 6 C -0.164 4.164 7 C 0.013 3.987 8 H 0.117 0.883 9 C 0.293 3.707 10 O -0.446 6.446 11 N -0.319 5.319 12 C 0.116 3.884 13 C -0.569 4.569 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.527 5.527 17 Si 0.717 3.283 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.003 4.003 22 C -0.029 4.029 23 O -0.292 6.292 24 C -0.064 4.064 25 O -0.275 6.275 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.765 -3.465 -0.330 8.510 hybrid contribution 0.785 0.359 -0.606 1.055 sum -6.981 -3.106 -0.936 7.698 Atomic orbital electron populations 1.21706 0.95542 1.00858 1.02490 1.21638 0.96616 0.95138 1.02226 1.23017 0.94115 0.93002 0.87832 0.91600 1.23391 0.95282 0.98766 1.01920 1.23125 0.99815 0.95914 0.97571 1.22515 0.87645 0.88038 1.00515 0.88254 1.20842 0.84859 0.87684 0.77365 1.90576 1.21426 1.83834 1.48771 1.48142 1.15550 1.07398 1.60828 1.19554 0.74842 0.97674 0.96302 1.21528 0.91751 1.46296 0.97359 0.92192 1.24888 0.97945 0.95118 0.95752 1.69946 1.13794 1.45912 1.23023 0.86577 0.80996 0.77971 0.82777 1.19725 1.20922 1.20888 1.21319 0.99904 0.85537 0.93584 1.23031 0.90093 0.99379 0.90441 1.88069 1.32705 1.93719 1.14743 1.22682 1.00530 0.98884 0.84339 1.88428 1.42087 1.57630 1.39315 0.93006 0.93258 0.91882 0.91125 0.91358 0.90284 0.90490 0.90195 0.86939 0.92929 0.94884 0.92677 0.89583 0.89350 0.93247 0.93559 0.94648 0.89852 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.83 37.16 0.37 -1.47 16 2 C -0.12 -1.51 5.68 -26.73 -0.15 -1.66 16 3 C 0.08 1.23 3.43 -25.70 -0.09 1.14 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 5 C -0.16 -2.36 6.57 -24.48 -0.16 -2.52 16 6 C -0.13 -2.37 4.53 -24.78 -0.11 -2.48 16 7 C 0.07 1.46 3.07 -27.16 -0.08 1.38 16 8 H 0.10 1.96 7.10 -51.93 -0.37 1.59 16 9 C 0.50 11.11 6.91 -10.98 -0.08 11.03 16 10 O -0.57 -13.61 16.04 -13.98 -0.22 -13.84 16 11 N -0.59 -12.64 2.44 -175.06 -0.43 -13.07 16 12 C 0.24 5.57 4.53 -5.19 -0.02 5.55 16 13 C -0.53 -13.25 6.72 -34.44 -0.23 -13.48 16 14 H 0.06 1.53 7.69 -52.49 -0.40 1.13 16 15 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -23.92 13.29 55.43 0.74 -23.18 16 17 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.12 2.28 5.92 -4.04 -0.02 2.26 16 22 C 0.05 0.81 6.28 37.16 0.23 1.05 16 23 O -0.37 -6.80 9.21 -35.23 -0.32 -7.12 16 24 C 0.03 0.45 11.01 101.05 1.11 1.56 16 25 O -0.36 -6.88 9.91 -54.77 -0.54 -7.42 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.89 7.91 -51.93 -0.41 0.47 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 33 H 0.08 1.61 7.48 -51.93 -0.39 1.22 16 34 H 0.11 2.30 6.65 -51.93 -0.35 1.96 16 35 H 0.05 1.36 6.79 -51.93 -0.35 1.00 16 36 H 0.03 0.81 5.78 -51.93 -0.30 0.51 16 37 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 39 H 0.09 1.63 7.25 -51.93 -0.38 1.25 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -29.59 352.36 -7.40 -37.00 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.57 Total: 3.36 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 0.66 Total: 3.93 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.31 Total: -36.25 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.09 Total: -28.38 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.59 -7.40 -37.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610687159.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.372 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds