Wall clock time and date at job start Tue Mar 31 2020 06:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47190 * 2 1 4 4 H 1.08996 * 109.47447 * 55.00080 * 3 2 1 5 5 C 1.53011 * 109.47183 * 174.99895 * 3 2 1 6 6 N 1.46503 * 109.47363 * 294.99700 * 3 2 1 7 7 C 1.34773 * 120.00222 * 154.99955 * 6 3 2 8 8 S 1.71206 * 119.99787 * 0.02562 * 7 6 3 9 9 N 1.34769 * 119.99919 * 179.97438 * 7 6 3 10 10 C 1.46509 * 119.99850 * 179.97438 * 9 7 6 11 11 C 1.53350 * 109.41915 * 275.13242 * 10 9 7 12 12 C 1.53198 * 109.14641 * 178.67654 * 11 10 9 13 13 N 1.46925 * 108.89335 * 54.57862 * 12 11 10 14 14 C 1.36931 * 120.63201 * 126.29969 * 13 12 11 15 15 H 1.08005 * 119.99889 * 331.83485 * 14 13 12 16 16 C 1.38813 * 120.00220 * 151.82683 * 14 13 12 17 17 N 1.31618 * 120.00004 * 343.08678 * 16 14 13 18 18 Si 1.86806 * 119.99953 * 163.08567 * 16 14 13 19 19 H 1.48496 * 109.47191 * 90.00149 * 18 16 14 20 20 H 1.48501 * 109.46981 * 210.00196 * 18 16 14 21 21 H 1.48500 * 109.46794 * 329.99854 * 18 16 14 22 22 C 1.46925 * 118.73856 * 306.31536 * 13 12 11 23 23 C 1.53044 * 109.45681 * 155.00448 * 10 9 7 24 24 H 1.09004 * 109.46991 * 300.00274 * 1 2 3 25 25 H 1.08998 * 109.46907 * 59.99698 * 1 2 3 26 26 H 1.08997 * 109.47597 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47351 * 239.99844 * 2 1 3 28 28 H 1.09002 * 109.47067 * 119.99815 * 2 1 3 29 29 H 1.08999 * 109.46545 * 299.99998 * 5 3 2 30 30 H 1.08996 * 109.46778 * 59.99775 * 5 3 2 31 31 H 1.08997 * 109.47067 * 179.97438 * 5 3 2 32 32 H 0.97001 * 119.99351 * 335.00640 * 6 3 2 33 33 H 0.97003 * 120.00205 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.45697 * 35.03653 * 10 9 7 35 35 H 1.08996 * 109.68537 * 58.71419 * 11 10 9 36 36 H 1.09000 * 109.47180 * 298.51335 * 11 10 9 37 37 H 1.08997 * 109.58387 * 294.71773 * 12 11 10 38 38 H 1.08993 * 109.58533 * 174.43928 * 12 11 10 39 39 H 0.96996 * 119.99787 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.58495 * 173.39541 * 22 13 12 41 41 H 1.09000 * 109.58924 * 293.68296 * 22 13 12 42 42 H 1.08996 * 109.49900 * 61.43623 * 23 10 9 43 43 H 1.09005 * 109.49524 * 301.33765 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 7 1.6525 2.0975 -1.2518 7 6 1.5257 3.4384 -1.2996 8 16 1.8181 4.3763 0.1025 9 7 1.1698 4.0409 -2.4514 10 6 1.0314 5.4985 -2.5032 11 6 -0.3723 5.8946 -2.0294 12 6 -0.4990 7.4211 -2.0545 13 7 -0.1551 7.9049 -3.3985 14 6 -1.0181 8.7109 -4.0919 15 1 -2.0811 8.6439 -3.9131 16 6 -0.5267 9.6141 -5.0245 17 7 0.7481 9.9416 -5.0151 18 14 -1.6746 10.3647 -6.2927 19 1 -2.2565 11.6196 -5.7524 20 1 -0.9141 10.6653 -7.5322 21 1 -2.7657 9.4059 -6.6016 22 6 1.1322 7.5073 -3.9846 23 6 1.2432 5.9800 -3.9404 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8532 0.9569 1.0572 30 1 3.9995 0.9052 -0.7160 31 1 3.9283 2.4719 0.1253 32 1 1.4872 1.5660 -2.0462 33 1 1.0045 3.5095 -3.2459 34 1 1.7763 5.9573 -1.8531 35 1 -0.5326 5.5329 -1.0137 36 1 -1.1171 5.4566 -2.6939 37 1 0.1827 7.8564 -1.3239 38 1 -1.5230 7.7067 -1.8143 39 1 1.0915 10.5724 -5.6670 40 1 1.1834 7.8475 -5.0189 41 1 1.9469 7.9517 -3.4129 42 1 0.4833 5.5411 -4.5868 43 1 2.2325 5.6770 -4.2835 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730438895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:00 Heat of formation + Delta-G solvation = 20.982142 kcal Electronic energy + Delta-G solvation = -20973.988600 eV Core-core repulsion = 17987.246726 eV Total energy + Delta-G solvation = -2986.741874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.157 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -39.50133 -37.96504 -35.82538 -33.35439 -31.87273 -30.36484 -29.89673 -29.12927 -25.27160 -24.24936 -23.42971 -22.23660 -22.09599 -21.22248 -19.54940 -18.17366 -17.17656 -16.63514 -15.53945 -15.08163 -14.83991 -14.69060 -14.12784 -13.98715 -13.76707 -13.68056 -13.50104 -12.96600 -12.82640 -12.43366 -12.16118 -12.07573 -11.56856 -11.44186 -11.36729 -11.12531 -11.03422 -10.91368 -10.80887 -10.71491 -10.45816 -10.25979 -10.00733 -9.78295 -9.58924 -8.92579 -8.47669 -7.59140 -7.10745 -6.67682 -5.79964 -3.21771 1.58580 2.14266 2.71944 3.36831 3.43951 3.45847 3.60938 4.36608 4.49296 4.66119 4.71190 5.18181 5.22891 5.28390 5.28881 5.34981 5.44215 5.47406 5.54425 5.58009 5.59514 5.76037 5.85815 5.88101 6.01537 6.06341 6.13814 6.27585 6.33092 6.46011 6.53719 6.62423 6.76136 6.82927 7.01466 7.05190 7.28879 7.42418 7.60780 7.79277 8.44380 9.20483 9.83828 10.40955 11.29108 Molecular weight = 285.16amu Principal moments of inertia in cm(-1) A = 0.036713 B = 0.003447 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.488018 B = 8121.275007 C = 8258.854951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.132 4.132 3 C 0.142 3.858 4 H 0.115 0.885 5 C -0.164 4.164 6 N -0.689 5.689 7 C 0.565 3.435 8 S -0.650 6.650 9 N -0.675 5.675 10 C 0.149 3.851 11 C -0.135 4.135 12 C 0.150 3.850 13 N -0.593 5.593 14 C -0.252 4.252 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.177 3.823 23 C -0.147 4.147 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.392 0.608 33 H 0.391 0.609 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.026 0.974 38 H 0.056 0.944 39 H 0.254 0.746 40 H 0.092 0.908 41 H 0.024 0.976 42 H 0.057 0.943 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.514 -21.097 5.269 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.170 4.170 3 C 0.038 3.962 4 H 0.133 0.867 5 C -0.222 4.222 6 N -0.320 5.320 7 C 0.203 3.797 8 S -0.525 6.525 9 N -0.301 5.301 10 C 0.046 3.954 11 C -0.176 4.176 12 C 0.023 3.977 13 N -0.316 5.316 14 C -0.382 4.382 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.731 3.269 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.050 3.950 23 C -0.188 4.188 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.228 0.772 33 H 0.227 0.773 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.799 -20.246 6.174 21.351 hybrid contribution -0.818 -0.664 -2.272 2.504 sum 1.981 -20.911 3.903 21.364 Atomic orbital electron populations 1.21786 0.95203 1.01685 1.02473 1.21875 0.96650 0.95325 1.03124 1.21418 0.95937 0.92406 0.86462 0.86682 1.22173 0.94529 1.03912 1.01629 1.45109 1.68599 1.03688 1.14620 1.22316 0.80253 0.85512 0.91581 1.93418 1.73582 1.63507 1.21990 1.45672 1.64778 1.10709 1.08918 1.21689 1.00183 0.74264 0.99275 1.22400 0.94593 0.99926 1.00694 1.20850 0.98862 0.90001 0.88019 1.44103 1.18771 1.56084 1.12596 1.19181 0.88852 1.12855 1.17323 0.91664 1.25053 0.96198 0.96893 1.01500 1.70020 1.13054 1.35130 1.36502 0.86315 0.80119 0.79186 0.81260 1.21339 1.21595 1.20557 1.20719 0.87292 0.86145 1.00857 1.22601 1.00080 1.02522 0.93564 0.92083 0.92919 0.92535 0.91733 0.89836 0.91340 0.93171 0.90521 0.77217 0.77336 0.87147 0.91349 0.92973 0.95583 0.92550 0.93597 0.88987 0.95763 0.92378 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.80 37.16 0.36 -0.66 16 2 C -0.13 -0.80 5.47 -26.73 -0.15 -0.95 16 3 C 0.14 1.25 2.34 -67.93 -0.16 1.09 16 4 H 0.12 1.31 6.82 -51.93 -0.35 0.96 16 5 C -0.16 -1.44 9.43 37.16 0.35 -1.09 16 6 N -0.69 -6.42 4.53 -55.52 -0.25 -6.67 16 7 C 0.56 7.52 7.92 -86.93 -0.69 6.83 16 8 S -0.65 -11.60 25.41 -107.50 -2.73 -14.33 16 9 N -0.67 -8.72 5.08 -55.32 -0.28 -9.00 16 10 C 0.15 2.49 2.18 -67.72 -0.15 2.34 16 11 C -0.14 -2.44 5.62 -26.45 -0.15 -2.59 16 12 C 0.15 3.23 6.50 -3.71 -0.02 3.20 16 13 N -0.59 -14.70 2.99 -172.32 -0.52 -15.22 16 14 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 15 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 17 N -0.90 -25.93 11.20 55.49 0.62 -25.31 16 18 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.18 4.09 5.30 -3.71 -0.02 4.07 16 23 C -0.15 -2.61 5.55 -26.61 -0.15 -2.76 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.38 7.75 -51.93 -0.40 -0.02 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.90 7.48 -51.93 -0.39 0.51 16 32 H 0.39 2.60 8.62 -40.82 -0.35 2.25 16 33 H 0.39 3.92 8.62 -40.82 -0.35 3.57 16 34 H 0.11 2.15 6.81 -51.93 -0.35 1.79 16 35 H 0.07 1.24 7.50 -51.93 -0.39 0.85 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 39 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -31.48 348.10 -11.46 -42.94 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.52 Total: 3.50 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.00 Total: 2.43 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.43 Total: -56.20 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Atomic # 16 Polarization: -11.60 SS G_CDS: -2.73 Total: -14.33 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.48 -11.46 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730438895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.922 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds