Wall clock time and date at job start Tue Mar 31 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 C 1.50705 * 109.46938 * 240.00221 * 2 1 3 5 5 O 1.20826 * 120.00291 * 24.34321 * 4 2 1 6 6 O 1.34231 * 119.99620 * 204.34208 * 4 2 1 7 7 C 1.45201 * 117.00116 * 180.02562 * 6 4 2 8 8 C 1.52993 * 109.47447 * 180.02562 * 7 6 4 9 9 O 1.42898 * 109.47380 * 64.99497 * 8 7 6 10 10 C 1.42904 * 113.99971 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47217 * 180.02562 * 10 9 8 12 12 H 1.08009 * 119.99711 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00232 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99693 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99946 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47138 * 90.00369 * 15 13 11 17 17 H 1.48501 * 109.46976 * 209.99930 * 15 13 11 18 18 H 1.48494 * 109.47394 * 330.00037 * 15 13 11 19 19 N 1.46902 * 109.47254 * 120.00125 * 2 1 3 20 20 C 1.48564 * 110.99871 * 59.49981 * 19 2 1 21 21 C 1.54378 * 104.69858 * 200.89982 * 20 19 2 22 22 C 1.54567 * 104.91112 * 23.88753 * 21 20 19 23 23 C 1.48560 * 110.99814 * 304.08495 * 19 2 1 24 24 H 1.08999 * 109.46956 * 302.34508 * 1 2 3 25 25 H 1.09003 * 109.47260 * 62.34997 * 1 2 3 26 26 H 1.09001 * 109.46712 * 182.34660 * 1 2 3 27 27 H 1.08996 * 109.46976 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.46915 * 300.00231 * 3 2 1 29 29 H 1.08998 * 109.46514 * 60.00042 * 3 2 1 30 30 H 1.09010 * 109.46764 * 300.00095 * 7 6 4 31 31 H 1.08996 * 109.46885 * 59.99606 * 7 6 4 32 32 H 1.09003 * 109.47474 * 185.00176 * 8 7 6 33 33 H 1.09003 * 109.46835 * 304.99518 * 8 7 6 34 34 H 1.09004 * 109.46992 * 299.99554 * 10 9 8 35 35 H 1.08999 * 109.47349 * 59.99936 * 10 9 8 36 36 H 0.97003 * 119.99622 * 179.97438 * 14 13 11 37 37 H 1.08998 * 110.41397 * 319.74283 * 20 19 2 38 38 H 1.09004 * 110.40847 * 82.06472 * 20 19 2 39 39 H 1.08998 * 110.32226 * 142.80964 * 21 20 19 40 40 H 1.08995 * 110.32372 * 265.01976 * 21 20 19 41 41 H 1.09004 * 110.29547 * 241.08120 * 22 21 20 42 42 H 1.08993 * 110.40533 * 118.93785 * 22 21 20 43 43 H 1.08999 * 110.41373 * 277.81724 * 23 19 2 44 44 H 1.09003 * 110.41470 * 40.14429 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.3349 -0.7805 -2.2147 6 8 3.2546 -1.2652 -1.2332 7 6 3.6730 -1.9327 -2.4529 8 6 5.0820 -2.4989 -2.2670 9 8 5.0572 -3.5195 -1.2670 10 6 6.3305 -4.1170 -1.0146 11 6 6.1873 -5.1737 0.0503 12 1 5.2206 -5.3691 0.4906 13 6 7.2902 -5.8910 0.4624 14 7 8.4672 -5.6534 -0.0741 15 14 7.1128 -7.2003 1.7829 16 1 6.8100 -8.5074 1.1465 17 1 8.3802 -7.3049 2.5497 18 1 6.0072 -6.8295 2.7023 19 7 2.0197 -0.6925 1.1994 20 6 1.5335 -2.0958 1.2398 21 6 1.6459 -2.5068 2.7236 22 6 1.5999 -1.1765 3.5093 23 6 1.4644 -0.0783 2.4328 24 1 -0.3633 0.5498 0.8682 25 1 -0.3634 0.4769 -0.9103 26 1 -0.3633 -1.0268 0.0421 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 2.9819 -2.7452 -2.6778 31 1 3.6738 -1.2182 -3.2761 32 1 5.4310 -2.9217 -3.2091 33 1 5.7560 -1.7010 -1.9551 34 1 6.7056 -4.5734 -1.9306 35 1 7.0300 -3.3525 -0.6766 36 1 9.2433 -6.1578 0.2162 37 1 0.4966 -2.1485 0.9082 38 1 2.1630 -2.7341 0.6197 39 1 0.8072 -3.1436 3.0046 40 1 2.5899 -3.0212 2.9034 41 1 2.5212 -1.0398 4.0757 42 1 0.7393 -1.1597 4.1779 43 1 2.0430 0.8020 2.7128 44 1 0.4171 0.1866 2.2873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815245074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:42 Heat of formation + Delta-G solvation = -125.945130 kcal Electronic energy + Delta-G solvation = -23841.471982 eV Core-core repulsion = 20373.313241 eV Total energy + Delta-G solvation = -3468.158741 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.89019 -38.98524 -37.03773 -35.99551 -34.48655 -32.73307 -30.09038 -29.45264 -28.88116 -27.56431 -26.90399 -24.57829 -22.44462 -22.13665 -21.48759 -20.59399 -19.34886 -17.81849 -16.74498 -16.42476 -16.26328 -15.73351 -15.51909 -15.20254 -14.54938 -14.35269 -14.29667 -13.81765 -13.76043 -13.38472 -12.93842 -12.84792 -12.48811 -12.18348 -12.09352 -11.87750 -11.82031 -11.64551 -11.42713 -11.36258 -11.23542 -11.08239 -10.88543 -10.82065 -10.71203 -10.37623 -10.29619 -10.18203 -9.99726 -9.09459 -8.83380 -8.50659 -8.17079 -6.09062 -4.10201 2.26185 2.80316 3.31582 3.36523 3.41934 3.73424 4.34931 4.40986 4.55500 4.70328 4.76457 4.82788 4.86466 4.98757 5.12547 5.27685 5.27981 5.32428 5.36161 5.48966 5.49903 5.51422 5.53387 5.59898 5.73800 5.83303 5.89325 5.91713 5.96823 6.01225 6.05745 6.13873 6.17999 6.29560 6.63483 6.77489 6.80788 7.09888 7.44276 7.81024 7.93064 8.16306 8.56965 9.02279 9.54255 11.02645 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.004667 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.135469 B = 5998.692666 C = 7259.638422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 C -0.137 4.137 4 C 0.475 3.525 5 O -0.519 6.519 6 O -0.318 6.318 7 C 0.069 3.931 8 C 0.064 3.936 9 O -0.389 6.389 10 C 0.195 3.805 11 C -0.511 4.511 12 H 0.066 0.934 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.907 3.093 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.271 1.271 19 N -0.483 5.483 20 C 0.019 3.981 21 C -0.122 4.122 22 C -0.123 4.123 23 C 0.025 3.975 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.005 0.995 35 H 0.007 0.993 36 H 0.264 0.736 37 H 0.047 0.953 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.078 13.513 2.574 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.015 3.985 3 C -0.195 4.195 4 C 0.318 3.682 5 O -0.407 6.407 6 O -0.233 6.233 7 C -0.004 4.004 8 C -0.014 4.014 9 O -0.308 6.308 10 C 0.121 3.879 11 C -0.549 4.549 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.734 3.266 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.196 1.196 19 N -0.208 5.208 20 C -0.109 4.109 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.103 4.103 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.022 0.978 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.621 13.383 2.331 19.958 hybrid contribution -0.551 -0.739 0.228 0.949 sum -15.172 12.644 2.559 19.915 Atomic orbital electron populations 1.22418 0.93939 1.03537 1.03654 1.21013 0.93926 0.95355 0.88163 1.21831 1.03174 0.91625 1.02852 1.23362 0.80110 0.75798 0.88960 1.90635 1.57549 1.56924 1.35629 1.86728 1.32302 1.64034 1.40197 1.23229 0.96918 0.95874 0.84421 1.22279 0.93351 0.92182 0.93568 1.87914 1.34891 1.51461 1.56574 1.20219 0.79617 0.92300 0.95780 1.21030 0.95328 1.18113 1.20474 0.91563 1.24933 0.94847 0.97574 0.97108 1.69965 0.99315 1.41564 1.43021 0.86349 0.77564 0.81361 0.81297 1.20525 1.21091 1.19599 1.65748 1.53135 1.02115 0.99824 1.23363 0.98996 0.90006 0.98491 1.22302 1.02983 0.97123 0.93589 1.22324 1.02187 0.94302 0.97249 1.23284 0.98440 0.98377 0.90161 0.90622 0.90469 0.91391 0.90393 0.91519 0.90836 0.90760 0.90658 0.92176 0.93206 0.97765 0.97510 0.92689 0.93527 0.88678 0.91496 0.90092 0.90769 0.91566 0.89884 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 7.31 37.16 0.27 -1.59 16 2 C 0.11 1.33 0.67 -132.75 -0.09 1.25 16 3 C -0.14 -1.39 8.40 37.16 0.31 -1.08 16 4 C 0.48 7.50 5.86 36.01 0.21 7.71 16 5 O -0.52 -8.90 15.78 -18.75 -0.30 -9.20 16 6 O -0.32 -5.63 9.45 -42.03 -0.40 -6.03 16 7 C 0.07 1.15 5.84 37.15 0.22 1.37 16 8 C 0.06 1.21 6.33 37.15 0.24 1.44 16 9 O -0.39 -9.54 10.30 -38.80 -0.40 -9.94 16 10 C 0.19 5.39 5.69 36.01 0.20 5.59 16 11 C -0.51 -15.12 9.43 -34.44 -0.32 -15.45 16 12 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 15 Si 0.91 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 N -0.48 -6.39 4.96 -215.69 -1.07 -7.46 16 20 C 0.02 0.26 5.52 -2.18 -0.01 0.25 16 21 C -0.12 -1.48 7.02 -25.19 -0.18 -1.66 16 22 C -0.12 -1.24 7.01 -25.18 -0.18 -1.42 16 23 C 0.02 0.25 5.34 -2.18 -0.01 0.24 16 24 H 0.08 0.63 6.09 -51.93 -0.32 0.31 16 25 H 0.08 0.82 7.79 -51.93 -0.40 0.41 16 26 H 0.07 0.76 5.94 -51.93 -0.31 0.45 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.59 7.05 -51.93 -0.37 0.23 16 30 H 0.07 1.26 8.13 -51.92 -0.42 0.84 16 31 H 0.08 1.06 8.13 -51.93 -0.42 0.63 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.05 0.59 5.59 -51.93 -0.29 0.30 16 38 H 0.09 1.62 7.63 -51.93 -0.40 1.23 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.76 7.69 -51.93 -0.40 0.37 16 44 H 0.05 0.44 5.51 -51.93 -0.29 0.16 16 LS Contribution 351.62 15.07 5.30 5.30 Total: -1.00 -32.91 351.62 -7.97 -40.88 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -7.38 Total: -2.37 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 0.56 Total: -1.81 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: -0.33 Total: -33.70 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -1.09 Total: -25.16 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.91 -7.97 -40.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815245074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.070 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds