Wall clock time and date at job start Tue Mar 31 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 C 1.50705 * 109.46938 * 240.00221 * 2 1 3 5 5 O 1.20826 * 120.00291 * 24.34321 * 4 2 1 6 6 O 1.34231 * 119.99620 * 204.34208 * 4 2 1 7 7 C 1.45201 * 117.00116 * 180.02562 * 6 4 2 8 8 C 1.52993 * 109.47447 * 180.02562 * 7 6 4 9 9 O 1.42898 * 109.47380 * 64.99497 * 8 7 6 10 10 C 1.42904 * 113.99971 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47217 * 180.02562 * 10 9 8 12 12 H 1.08009 * 119.99711 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00232 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99693 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99946 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47138 * 90.00369 * 15 13 11 17 17 H 1.48501 * 109.46976 * 209.99930 * 15 13 11 18 18 H 1.48494 * 109.47394 * 330.00037 * 15 13 11 19 19 N 1.46902 * 109.47254 * 120.00125 * 2 1 3 20 20 C 1.48564 * 110.99871 * 59.49981 * 19 2 1 21 21 C 1.54378 * 104.69858 * 200.89982 * 20 19 2 22 22 C 1.54567 * 104.91112 * 23.88753 * 21 20 19 23 23 C 1.48560 * 110.99814 * 304.08495 * 19 2 1 24 24 H 1.08999 * 109.46956 * 302.34508 * 1 2 3 25 25 H 1.09003 * 109.47260 * 62.34997 * 1 2 3 26 26 H 1.09001 * 109.46712 * 182.34660 * 1 2 3 27 27 H 1.08996 * 109.46976 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.46915 * 300.00231 * 3 2 1 29 29 H 1.08998 * 109.46514 * 60.00042 * 3 2 1 30 30 H 1.09010 * 109.46764 * 300.00095 * 7 6 4 31 31 H 1.08996 * 109.46885 * 59.99606 * 7 6 4 32 32 H 1.09003 * 109.47474 * 185.00176 * 8 7 6 33 33 H 1.09003 * 109.46835 * 304.99518 * 8 7 6 34 34 H 1.09004 * 109.46992 * 299.99554 * 10 9 8 35 35 H 1.08999 * 109.47349 * 59.99936 * 10 9 8 36 36 H 0.97003 * 119.99622 * 179.97438 * 14 13 11 37 37 H 1.08998 * 110.41397 * 319.74283 * 20 19 2 38 38 H 1.09004 * 110.40847 * 82.06472 * 20 19 2 39 39 H 1.08998 * 110.32226 * 142.80964 * 21 20 19 40 40 H 1.08995 * 110.32372 * 265.01976 * 21 20 19 41 41 H 1.09004 * 110.29547 * 241.08120 * 22 21 20 42 42 H 1.08993 * 110.40533 * 118.93785 * 22 21 20 43 43 H 1.08999 * 110.41373 * 277.81724 * 23 19 2 44 44 H 1.09003 * 110.41470 * 40.14429 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.3349 -0.7805 -2.2147 6 8 3.2546 -1.2652 -1.2332 7 6 3.6730 -1.9327 -2.4529 8 6 5.0820 -2.4989 -2.2670 9 8 5.0572 -3.5195 -1.2670 10 6 6.3305 -4.1170 -1.0146 11 6 6.1873 -5.1737 0.0503 12 1 5.2206 -5.3691 0.4906 13 6 7.2902 -5.8910 0.4624 14 7 8.4672 -5.6534 -0.0741 15 14 7.1128 -7.2003 1.7829 16 1 6.8100 -8.5074 1.1465 17 1 8.3802 -7.3049 2.5497 18 1 6.0072 -6.8295 2.7023 19 7 2.0197 -0.6925 1.1994 20 6 1.5335 -2.0958 1.2398 21 6 1.6459 -2.5068 2.7236 22 6 1.5999 -1.1765 3.5093 23 6 1.4644 -0.0783 2.4328 24 1 -0.3633 0.5498 0.8682 25 1 -0.3634 0.4769 -0.9103 26 1 -0.3633 -1.0268 0.0421 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 2.9819 -2.7452 -2.6778 31 1 3.6738 -1.2182 -3.2761 32 1 5.4310 -2.9217 -3.2091 33 1 5.7560 -1.7010 -1.9551 34 1 6.7056 -4.5734 -1.9306 35 1 7.0300 -3.3525 -0.6766 36 1 9.2433 -6.1578 0.2162 37 1 0.4966 -2.1485 0.9082 38 1 2.1630 -2.7341 0.6197 39 1 0.8072 -3.1436 3.0046 40 1 2.5899 -3.0212 2.9034 41 1 2.5212 -1.0398 4.0757 42 1 0.7393 -1.1597 4.1779 43 1 2.0430 0.8020 2.7128 44 1 0.4171 0.1866 2.2873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815245074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:41 Heat of formation + Delta-G solvation = -147.801324 kcal Electronic energy + Delta-G solvation = -23842.419737 eV Core-core repulsion = 20373.313241 eV Total energy + Delta-G solvation = -3469.106497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.04808 -40.06470 -38.74178 -37.50774 -35.43429 -34.94208 -31.69902 -30.34725 -29.82362 -29.06456 -28.35230 -25.72143 -24.54116 -23.52527 -22.68695 -21.52467 -20.43233 -18.95503 -18.67789 -17.99982 -17.67618 -17.06708 -16.73299 -16.57123 -16.25189 -16.14631 -15.33472 -15.19882 -14.82112 -14.50760 -14.24913 -14.11817 -13.75414 -13.45477 -13.36426 -13.08672 -12.94566 -12.91410 -12.72873 -12.68721 -12.53832 -12.42173 -12.33498 -12.17576 -12.00325 -11.96528 -11.71830 -11.38671 -11.28253 -11.22855 -10.89307 -10.27407 -9.43578 -8.32164 -6.44031 1.03915 1.39440 1.42353 1.54440 1.62695 2.34333 2.80770 3.01826 3.05020 3.39208 3.66036 3.78991 3.82953 3.90154 3.94562 4.05859 4.08391 4.26862 4.37689 4.46194 4.54317 4.55925 4.57800 4.62178 4.71828 4.74273 4.78781 4.84212 4.88814 4.98899 5.09770 5.09845 5.16906 5.17054 5.27762 5.30439 5.39477 5.54093 5.80816 5.91261 5.95097 6.49560 6.68115 6.79436 7.27289 8.80271 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.004667 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.135469 B = 5998.692666 C = 7259.638422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 C -0.134 4.134 4 C 0.470 3.530 5 O -0.537 6.537 6 O -0.340 6.340 7 C 0.073 3.927 8 C 0.057 3.943 9 O -0.406 6.406 10 C 0.209 3.791 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.009 3.991 14 N -0.930 5.930 15 Si 0.981 3.019 16 H -0.267 1.267 17 H -0.273 1.273 18 H -0.265 1.265 19 N -0.507 5.507 20 C 0.020 3.980 21 C -0.123 4.123 22 C -0.118 4.118 23 C 0.026 3.974 24 H 0.105 0.895 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.054 0.946 34 H -0.009 1.009 35 H -0.013 1.013 36 H 0.271 0.729 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.084 0.916 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.574 14.408 4.039 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.015 3.985 3 C -0.191 4.191 4 C 0.314 3.686 5 O -0.427 6.427 6 O -0.255 6.255 7 C 0.000 4.000 8 C -0.020 4.020 9 O -0.326 6.326 10 C 0.135 3.865 11 C -0.584 4.584 12 H 0.076 0.924 13 C -0.190 4.190 14 N -0.569 5.569 15 Si 0.804 3.196 16 H -0.192 1.192 17 H -0.198 1.198 18 H -0.190 1.190 19 N -0.232 5.232 20 C -0.108 4.108 21 C -0.161 4.161 22 C -0.156 4.156 23 C -0.100 4.100 24 H 0.124 0.876 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.009 0.991 35 H 0.005 0.995 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.124 14.300 3.783 21.882 hybrid contribution -0.079 -0.962 -0.307 1.013 sum -16.203 13.338 3.476 21.273 Atomic orbital electron populations 1.22406 0.92106 1.03351 1.05022 1.21219 0.95148 0.95859 0.86298 1.21861 1.02313 0.90205 1.04710 1.24194 0.79153 0.75191 0.90041 1.90611 1.57675 1.57712 1.36692 1.86730 1.33690 1.64411 1.40644 1.23188 0.95141 0.96440 0.85263 1.22587 0.95319 0.91057 0.93039 1.87871 1.33247 1.52956 1.58571 1.19853 0.80431 0.91517 0.94738 1.21334 0.95556 1.19667 1.21839 0.92359 1.25919 0.94123 0.99648 0.99288 1.70064 1.00150 1.42524 1.44151 0.85216 0.78097 0.78206 0.78114 1.19236 1.19751 1.18970 1.65690 1.54355 1.01899 1.01303 1.23229 0.98549 0.90253 0.98741 1.22296 1.02165 0.98619 0.93049 1.22337 1.03173 0.92732 0.97326 1.23403 0.99856 0.98433 0.88352 0.87620 0.90520 0.92465 0.91809 0.90585 0.88037 0.91475 0.87568 0.90146 0.92818 0.99123 0.99521 0.92009 0.92311 0.93266 0.89753 0.92982 0.91372 0.88812 0.88593 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 7.31 71.98 0.53 -2.66 16 2 C 0.11 2.51 0.67 2.78 0.00 2.51 16 3 C -0.13 -2.42 8.40 71.98 0.60 -1.82 16 4 C 0.47 14.88 5.86 71.24 0.42 15.29 16 5 O -0.54 -18.38 15.78 21.96 0.35 -18.03 16 6 O -0.34 -12.34 9.45 -48.78 -0.46 -12.80 16 7 C 0.07 2.47 5.84 71.98 0.42 2.89 16 8 C 0.06 2.19 6.33 71.98 0.46 2.65 16 9 O -0.41 -20.80 10.30 -145.57 -1.50 -22.30 16 10 C 0.21 12.06 5.69 71.24 0.41 12.47 16 11 C -0.55 -33.29 9.43 25.60 0.24 -33.05 16 12 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 13 C 0.01 0.51 5.46 84.65 0.46 0.97 16 14 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 15 Si 0.98 44.93 29.54 68.60 2.03 46.95 16 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 N -0.51 -12.99 4.96 -836.33 -4.15 -17.14 16 20 C 0.02 0.56 5.52 86.45 0.48 1.04 16 21 C -0.12 -2.97 7.02 31.60 0.22 -2.75 16 22 C -0.12 -2.14 7.01 31.60 0.22 -1.91 16 23 C 0.03 0.45 5.34 86.45 0.46 0.91 16 24 H 0.11 1.31 6.09 -2.39 -0.01 1.30 16 25 H 0.08 1.45 7.79 -2.39 -0.02 1.44 16 26 H 0.06 1.19 5.94 -2.39 -0.01 1.18 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.10 1.26 7.05 -2.39 -0.02 1.25 16 30 H 0.07 2.34 8.13 -2.38 -0.02 2.32 16 31 H 0.11 2.91 8.13 -2.39 -0.02 2.89 16 32 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 35 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 36 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.06 1.47 5.59 -2.39 -0.01 1.45 16 38 H 0.05 1.81 7.63 -2.38 -0.02 1.79 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.10 1.45 7.69 -2.39 -0.02 1.43 16 44 H 0.07 0.96 5.51 -2.39 -0.01 0.94 16 Total: -1.00 -72.99 351.62 2.43 -70.56 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.97 Total: 12.28 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 4.92 Total: -3.45 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -3.87 Total: -73.21 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -1.61 Total: -53.13 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -72.99 2.43 -70.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815245074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.241 kcal (2) G-P(sol) polarization free energy of solvation -72.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds