Wall clock time and date at job start Tue Mar 31 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46749 * 2 1 4 4 H 1.09001 * 109.47670 * 54.99607 * 3 2 1 5 5 C 1.53001 * 109.46963 * 294.99652 * 3 2 1 6 6 C 1.53004 * 109.47103 * 174.99975 * 3 2 1 7 7 H 1.08999 * 109.46517 * 304.99927 * 6 3 2 8 8 C 1.50698 * 109.46712 * 64.99764 * 6 3 2 9 9 O 1.20832 * 119.99849 * 120.00767 * 8 6 3 10 10 O 1.34221 * 120.00402 * 299.99557 * 8 6 3 11 11 C 1.45198 * 117.00278 * 180.02562 * 10 8 6 12 12 N 1.46895 * 109.47020 * 184.99902 * 6 3 2 13 13 C 1.48562 * 111.00142 * 64.57883 * 12 6 3 14 14 C 1.54377 * 104.59407 * 159.03785 * 13 12 6 15 15 C 1.54266 * 105.06190 * 336.14868 * 14 13 12 16 16 O 1.42899 * 110.32327 * 118.99672 * 15 14 13 17 17 C 1.50702 * 110.32386 * 241.10420 * 15 14 13 18 18 H 1.07991 * 120.00105 * 118.54573 * 17 15 14 19 19 C 1.37876 * 119.99854 * 298.54444 * 17 15 14 20 20 N 1.31521 * 120.00280 * 0.02562 * 19 17 15 21 21 Si 1.86802 * 119.99891 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47037 * 90.00011 * 21 19 17 23 23 H 1.48502 * 109.47193 * 209.99905 * 21 19 17 24 24 H 1.48497 * 109.47066 * 330.00257 * 21 19 17 25 25 C 1.48562 * 110.99842 * 180.02562 * 12 6 3 26 26 H 1.09001 * 109.46574 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47337 * 300.00209 * 1 2 3 28 28 H 1.09002 * 109.46905 * 60.00648 * 1 2 3 29 29 H 1.08994 * 109.47087 * 240.00245 * 2 1 3 30 30 H 1.09002 * 109.46905 * 119.99352 * 2 1 3 31 31 H 1.08998 * 109.47490 * 299.99985 * 5 3 2 32 32 H 1.09003 * 109.47073 * 60.00403 * 5 3 2 33 33 H 1.09001 * 109.47038 * 179.97438 * 5 3 2 34 34 H 1.09003 * 109.47466 * 179.97438 * 11 10 8 35 35 H 1.08998 * 109.47542 * 300.00350 * 11 10 8 36 36 H 1.09001 * 109.47095 * 60.00487 * 11 10 8 37 37 H 1.09000 * 110.41111 * 40.26361 * 13 12 6 38 38 H 1.08989 * 110.41482 * 277.81625 * 13 12 6 39 39 H 1.09005 * 110.32720 * 217.25400 * 14 13 12 40 40 H 1.09003 * 110.32570 * 95.04509 * 14 13 12 41 41 H 0.96703 * 114.00161 * 61.45366 * 16 15 14 42 42 H 0.96995 * 119.99887 * 179.97438 * 20 19 17 43 43 H 1.08998 * 110.41528 * 82.17831 * 25 12 6 44 44 H 1.08997 * 110.50874 * 319.78619 * 25 12 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4445 0.1257 7 1 3.8570 0.8802 1.0113 8 6 4.1705 0.8074 -1.0983 9 8 4.9246 1.4408 -1.7986 10 8 3.8726 -0.4635 -1.4106 11 6 4.4929 -1.0120 -2.6033 12 7 4.0444 2.8277 0.2461 13 6 3.5550 3.4536 1.5014 14 6 4.5269 4.6256 1.7564 15 6 5.8225 4.2411 1.0123 16 8 6.1216 5.2086 0.0041 17 6 6.9693 4.1266 1.9833 18 1 7.4817 3.1838 2.1049 19 6 7.3644 5.2255 2.7162 20 7 6.7401 6.3736 2.5685 21 14 8.7865 5.0837 3.9192 22 1 10.0583 5.4021 3.2219 23 1 8.5841 6.0372 5.0395 24 1 8.8475 3.6991 4.4525 25 6 5.5243 2.8692 0.3698 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 2.0699 1.5875 -2.1492 32 1 0.5489 2.1252 -1.3970 33 1 1.9981 3.1544 -1.3072 34 1 4.1687 -2.0438 -2.7398 35 1 4.1990 -0.4208 -3.4706 36 1 5.5771 -0.9837 -2.4948 37 1 3.5968 2.7394 2.3237 38 1 2.5386 3.8244 1.3701 39 1 4.7207 4.7315 2.8238 40 1 4.1183 5.5514 1.3513 41 1 6.2743 6.0997 0.3470 42 1 7.0178 7.1466 3.0844 43 1 5.9901 2.8001 -0.6132 44 1 5.8764 2.0634 1.0139 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930818889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:57 Heat of formation + Delta-G solvation = -134.168678 kcal Electronic energy + Delta-G solvation = -24693.106867 eV Core-core repulsion = 21224.591526 eV Total energy + Delta-G solvation = -3468.515341 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65129 -38.40800 -36.51638 -36.19275 -34.18036 -32.07020 -30.90678 -28.87193 -28.04719 -27.80774 -26.12736 -24.38688 -23.71302 -21.23917 -20.71323 -19.59285 -19.00437 -17.21001 -17.06843 -16.62193 -16.02380 -15.41633 -14.94926 -14.69415 -14.60040 -14.22863 -13.65659 -13.55261 -13.21119 -12.84569 -12.67052 -12.43662 -12.19996 -12.09914 -11.81263 -11.70490 -11.65617 -11.27903 -11.24172 -11.10182 -10.86708 -10.60891 -10.56412 -10.54862 -10.42282 -10.35296 -10.29353 -9.81311 -9.77001 -9.01744 -8.54651 -8.06378 -7.82589 -6.17383 -4.26033 2.49793 2.78612 3.23976 3.31020 3.33826 4.28871 4.43550 4.80956 4.89297 5.05334 5.10968 5.11523 5.14127 5.21145 5.31481 5.50343 5.54465 5.57973 5.67324 5.75701 5.79748 5.94192 5.97794 6.01905 6.08442 6.12322 6.18109 6.22286 6.38876 6.46640 6.53962 6.59309 6.73902 7.02373 7.14204 7.34626 7.50843 7.56377 7.59308 7.83850 8.08763 8.25477 8.76957 9.42836 9.64829 10.89136 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.022752 B = 0.004887 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.354330 B = 5727.587476 C = 6184.376423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.077 4.077 4 H 0.085 0.915 5 C -0.142 4.142 6 C 0.086 3.914 7 H 0.072 0.928 8 C 0.465 3.535 9 O -0.479 6.479 10 O -0.360 6.360 11 C 0.033 3.967 12 N -0.489 5.489 13 C 0.034 3.966 14 C -0.119 4.119 15 C 0.255 3.745 16 O -0.583 6.583 17 C -0.537 4.537 18 H 0.058 0.942 19 C 0.070 3.930 20 N -0.894 5.894 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.046 3.954 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.035 0.965 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.377 0.623 42 H 0.266 0.734 43 H 0.093 0.907 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.860 -12.280 -4.386 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.096 4.096 4 H 0.104 0.896 5 C -0.199 4.199 6 C -0.024 4.024 7 H 0.090 0.910 8 C 0.306 3.694 9 O -0.363 6.363 10 O -0.278 6.278 11 C -0.061 4.061 12 N -0.214 5.214 13 C -0.093 4.093 14 C -0.158 4.158 15 C 0.214 3.786 16 O -0.391 6.391 17 C -0.575 4.575 18 H 0.076 0.924 19 C -0.132 4.132 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.081 4.081 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.227 0.773 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.874 -12.165 -5.443 17.200 hybrid contribution 1.302 -0.067 1.706 2.147 sum -9.572 -12.232 -3.737 15.975 Atomic orbital electron populations 1.21788 0.95878 1.01229 1.01795 1.21766 0.95701 0.95851 1.03258 1.21138 0.91316 0.96920 1.00227 0.89637 1.21814 1.00406 1.02143 0.95586 1.21591 0.96008 0.92089 0.92723 0.91016 1.23613 0.79141 0.79671 0.86973 1.90691 1.32901 1.62458 1.50290 1.86555 1.66686 1.29559 1.44951 1.23196 0.98499 0.98638 0.85748 1.65391 1.09320 1.11153 1.35537 1.23204 0.99453 0.97448 0.89182 1.22860 0.95749 0.95163 1.02010 1.19196 0.90898 0.84238 0.84245 1.86176 1.93155 1.22523 1.37225 1.21721 1.16676 0.96906 1.22220 0.92355 1.24987 0.96448 0.95196 0.96543 1.69713 1.40745 1.00860 1.42046 0.86507 0.82562 0.77948 0.80452 1.20458 1.21088 1.19919 1.23259 0.85460 0.97901 1.01464 0.93017 0.92931 0.92561 0.90152 0.92039 0.93676 0.92687 0.90779 0.88518 0.92105 0.92083 0.94632 0.91354 0.90909 0.92519 0.77328 0.92359 0.88929 0.94413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.67 37.16 0.36 -1.01 16 2 C -0.13 -1.40 4.88 -26.73 -0.13 -1.53 16 3 C -0.08 -1.01 2.10 -90.61 -0.19 -1.20 16 4 H 0.09 1.09 6.83 -51.93 -0.35 0.74 16 5 C -0.14 -1.92 8.52 37.16 0.32 -1.60 16 6 C 0.09 1.40 1.56 -68.87 -0.11 1.29 16 7 H 0.07 1.12 7.98 -51.93 -0.41 0.71 16 8 C 0.46 7.82 5.47 36.00 0.20 8.01 16 9 O -0.48 -9.72 13.82 -18.76 -0.26 -9.97 16 10 O -0.36 -4.91 7.79 -39.24 -0.31 -5.22 16 11 C 0.03 0.36 10.56 101.05 1.07 1.42 16 12 N -0.49 -9.67 4.45 -223.40 -0.99 -10.67 16 13 C 0.03 0.66 5.53 -2.18 -0.01 0.64 16 14 C -0.12 -2.77 5.55 -25.35 -0.14 -2.91 16 15 C 0.25 6.55 1.05 -90.37 -0.10 6.45 16 16 O -0.58 -16.09 12.94 -35.23 -0.46 -16.55 16 17 C -0.54 -14.68 8.08 -34.44 -0.28 -14.96 16 18 H 0.06 1.60 7.58 -52.49 -0.40 1.20 16 19 C 0.07 1.88 5.02 -17.82 -0.09 1.79 16 20 N -0.89 -24.09 10.81 55.43 0.60 -23.49 16 21 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 C 0.05 1.07 4.78 -2.17 -0.01 1.06 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 29 H 0.08 0.92 5.77 -51.93 -0.30 0.62 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.63 7.07 -51.93 -0.37 0.26 16 32 H 0.05 0.62 6.57 -51.93 -0.34 0.27 16 33 H 0.07 1.17 7.75 -51.93 -0.40 0.76 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 36 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 37 H 0.04 0.64 7.90 -51.93 -0.41 0.23 16 38 H 0.07 1.16 7.58 -51.93 -0.39 0.77 16 39 H 0.07 1.80 7.24 -51.93 -0.38 1.42 16 40 H 0.06 1.36 7.98 -51.93 -0.41 0.94 16 41 H 0.38 10.38 7.32 45.56 0.33 10.72 16 42 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 43 H 0.09 2.35 6.26 -51.93 -0.32 2.03 16 44 H 0.04 0.86 7.54 -51.93 -0.39 0.47 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -29.78 338.50 -7.02 -36.79 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.57 Total: 10.72 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 0.89 Total: -2.54 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: -0.39 Total: -34.15 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -1.02 Total: -31.75 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.78 -7.02 -36.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930818889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.374 kcal (2) G-P(sol) polarization free energy of solvation -29.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds