Wall clock time and date at job start Tue Mar 31 2020 06:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 117.00048 * 2 1 4 4 O 1.20830 * 119.99842 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99757 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.52827 * 60.12306 * 5 3 2 7 7 C 1.53118 * 109.52178 * 299.99372 * 5 3 2 8 8 C 1.53036 * 109.28007 * 182.44186 * 7 5 3 9 9 N 1.46846 * 109.52162 * 59.18140 * 8 7 5 10 10 C 1.46909 * 111.00243 * 174.15828 * 9 8 7 11 11 C 1.53002 * 109.46665 * 66.04629 * 10 9 8 12 12 O 1.42901 * 109.46722 * 65.00284 * 11 10 9 13 13 C 1.42901 * 113.99633 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47324 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99677 * 359.97438 * 14 13 12 16 16 C 1.37883 * 120.00286 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99716 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99883 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46887 * 60.00198 * 18 16 14 20 20 H 1.48500 * 109.46860 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47022 * 299.99953 * 18 16 14 22 22 C 1.46846 * 111.19997 * 298.26076 * 9 8 7 23 23 H 1.08998 * 109.45881 * 301.72191 * 22 9 8 24 24 C 1.52996 * 109.46354 * 181.75712 * 22 9 8 25 25 C 1.53030 * 109.52377 * 61.74000 * 22 9 8 26 26 H 1.08999 * 109.47360 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46867 * 300.00036 * 1 2 3 28 28 H 1.08999 * 109.47236 * 59.99959 * 1 2 3 29 29 H 1.09008 * 109.50062 * 62.50714 * 7 5 3 30 30 H 1.09000 * 109.50693 * 302.38406 * 7 5 3 31 31 H 1.08998 * 109.46728 * 299.16963 * 8 7 5 32 32 H 1.09004 * 109.46553 * 179.19847 * 8 7 5 33 33 H 1.09000 * 109.47118 * 186.04432 * 10 9 8 34 34 H 1.08998 * 109.47002 * 306.05017 * 10 9 8 35 35 H 1.08999 * 109.46802 * 184.99879 * 11 10 9 36 36 H 1.09001 * 109.47393 * 305.00406 * 11 10 9 37 37 H 1.09001 * 109.47554 * 299.99669 * 13 12 11 38 38 H 1.09004 * 109.47550 * 59.99793 * 13 12 11 39 39 H 0.97001 * 119.99729 * 180.02562 * 17 16 14 40 40 H 1.09010 * 109.47425 * 59.99978 * 24 22 9 41 41 H 1.09001 * 109.47194 * 179.97438 * 24 22 9 42 42 H 1.09000 * 109.47617 * 299.99800 * 24 22 9 43 43 H 1.09003 * 109.50272 * 180.88314 * 25 22 9 44 44 H 1.08997 * 109.53617 * 60.78297 * 25 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9566 0.7830 -0.8916 7 6 4.1155 0.5808 1.2489 8 6 5.6396 0.7170 1.2739 9 7 6.0051 2.1392 1.2815 10 6 7.4551 2.3093 1.4449 11 6 8.1755 1.7549 0.2142 12 8 7.8300 2.5356 -0.9318 13 6 8.4534 2.0996 -2.1414 14 6 8.0202 2.9885 -3.2786 15 1 7.3367 3.8045 -3.0958 16 6 8.4963 2.7600 -4.5523 17 7 9.3281 1.7660 -4.7748 18 14 7.9586 3.8616 -5.9619 19 1 8.3584 5.2628 -5.6754 20 1 8.6066 3.4086 -7.2190 21 1 6.4831 3.7887 -6.1120 22 6 5.5292 2.8163 0.0685 23 1 5.9517 2.3278 -0.8095 24 6 5.9682 4.2816 0.0970 25 6 4.0019 2.7427 0.0075 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.8448 -0.4749 1.2275 30 1 3.6939 1.0472 2.1393 31 1 6.0616 0.2384 0.3903 32 1 6.0326 0.2362 2.1698 33 1 7.6866 3.3688 1.5548 34 1 7.7863 1.7710 2.3329 35 1 9.2529 1.7997 0.3730 36 1 7.8747 0.7197 0.0527 37 1 9.5366 2.1519 -2.0314 38 1 8.1589 1.0714 -2.3520 39 1 9.6634 1.6055 -5.6708 40 1 7.0562 4.3343 0.1394 41 1 5.6154 4.7842 -0.8036 42 1 5.5464 4.7704 0.9752 43 1 3.6499 3.2317 -0.9009 44 1 3.5778 3.2433 0.8780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933168591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:47 Heat of formation + Delta-G solvation = -155.245420 kcal Electronic energy + Delta-G solvation = -24094.423204 eV Core-core repulsion = 20624.993908 eV Total energy + Delta-G solvation = -3469.429297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81890 -40.46500 -38.21522 -37.50565 -35.28156 -34.57385 -33.35341 -30.58112 -29.15054 -28.49906 -27.73921 -25.72647 -24.52071 -23.25403 -23.13752 -21.37727 -20.41220 -18.63788 -18.48269 -17.74874 -17.50376 -17.35818 -17.20536 -16.50190 -16.05060 -15.97658 -15.40336 -14.95484 -14.87013 -14.66608 -14.25546 -14.01683 -13.65092 -13.40459 -13.18180 -13.10664 -13.05849 -12.83534 -12.71485 -12.67360 -12.52185 -12.25539 -12.17478 -11.99637 -11.84909 -11.74760 -11.68985 -11.36333 -11.22430 -11.16141 -10.78399 -10.10153 -9.03651 -8.31244 -6.42055 1.10917 1.38804 1.42103 1.50287 1.71648 2.33396 2.96252 3.03264 3.30260 3.56830 3.72850 3.81304 4.13375 4.17577 4.27342 4.31048 4.32298 4.33183 4.45037 4.54110 4.60214 4.64750 4.66379 4.71920 4.78991 4.86711 4.88506 4.96013 4.99358 5.06576 5.10690 5.19587 5.21395 5.23804 5.34846 5.50536 5.56715 5.57974 5.98918 6.22594 6.28748 6.55951 6.67862 6.84333 7.29634 8.80671 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.004849 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.443713 B = 5773.561454 C = 6800.819637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.473 3.527 4 O -0.536 6.536 5 C -0.083 4.083 6 H 0.103 0.897 7 C -0.093 4.093 8 C 0.050 3.950 9 N -0.527 5.527 10 C 0.064 3.936 11 C 0.014 3.986 12 O -0.381 6.381 13 C 0.209 3.791 14 C -0.537 4.537 15 H 0.063 0.937 16 C 0.009 3.991 17 N -0.931 5.931 18 Si 0.973 3.027 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.268 1.268 22 C 0.081 3.919 23 H 0.055 0.945 24 C -0.126 4.126 25 C -0.087 4.087 26 H 0.133 0.867 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.025 0.975 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.042 0.958 36 H 0.038 0.962 37 H -0.021 1.021 38 H -0.021 1.021 39 H 0.269 0.731 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.348 -4.613 13.825 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.317 3.683 4 O -0.426 6.426 5 C -0.102 4.102 6 H 0.121 0.879 7 C -0.130 4.130 8 C -0.077 4.077 9 N -0.251 5.251 10 C -0.064 4.064 11 C -0.064 4.064 12 O -0.301 6.301 13 C 0.134 3.866 14 C -0.574 4.574 15 H 0.081 0.919 16 C -0.190 4.190 17 N -0.571 5.571 18 Si 0.797 3.203 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.193 1.193 22 C -0.026 4.026 23 H 0.073 0.927 24 C -0.183 4.183 25 C -0.126 4.126 26 H 0.151 0.849 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.043 0.957 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.132 0.868 35 H 0.060 0.940 36 H 0.056 0.944 37 H -0.003 1.003 38 H -0.003 1.003 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.850 -4.043 14.106 19.505 hybrid contribution 0.492 -0.160 -1.903 1.972 sum -12.358 -4.203 12.202 17.869 Atomic orbital electron populations 1.23561 0.74886 1.05748 1.02448 1.86513 1.24955 1.32619 1.83593 1.23975 0.92206 0.81193 0.70915 1.90638 1.67815 1.37408 1.46718 1.21215 0.86274 0.99674 1.03046 0.87867 1.21524 0.95006 1.01347 0.95163 1.22191 0.95230 0.88612 1.01714 1.62261 1.12867 1.12518 1.37489 1.22391 0.86190 1.02907 0.94939 1.23345 0.99247 0.95256 0.88601 1.88030 1.69291 1.56283 1.16498 1.19730 0.90835 0.93520 0.82494 1.21308 1.28405 1.15009 0.92717 0.91898 1.25859 0.94723 0.96974 1.01432 1.70062 1.32853 1.31165 1.23004 0.85375 0.78754 0.78871 0.77315 1.19059 1.20241 1.19283 1.21697 0.92829 0.96001 0.92121 0.92721 1.21658 1.01573 0.94581 1.00482 1.21477 0.95279 0.93411 1.02386 0.84882 0.91719 0.92383 0.88433 0.90231 0.95666 0.87808 0.89811 0.86784 0.93960 0.94378 1.00297 1.00316 0.92248 0.92331 0.93995 0.92158 0.92480 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.36 -8.19 10.49 -51.40 -0.54 -8.73 16 3 C 0.47 12.81 7.26 71.23 0.52 13.32 16 4 O -0.54 -17.38 15.73 21.95 0.35 -17.04 16 5 C -0.08 -2.18 2.70 -11.46 -0.03 -2.21 16 6 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 7 C -0.09 -1.95 5.31 30.65 0.16 -1.78 16 8 C 0.05 1.16 5.06 86.33 0.44 1.59 16 9 N -0.53 -14.27 4.69 -871.11 -4.09 -18.36 16 10 C 0.06 1.69 5.51 86.30 0.48 2.16 16 11 C 0.01 0.48 5.75 71.98 0.41 0.90 16 12 O -0.38 -16.96 5.16 -148.98 -0.77 -17.73 16 13 C 0.21 11.34 5.69 71.24 0.41 11.74 16 14 C -0.54 -31.02 9.43 25.60 0.24 -30.77 16 15 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 16 C 0.01 0.49 5.46 84.66 0.46 0.95 16 17 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 18 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 C 0.08 2.64 1.77 44.93 0.08 2.72 16 23 H 0.06 2.22 5.58 -2.39 -0.01 2.21 16 24 C -0.13 -4.14 8.20 71.98 0.59 -3.55 16 25 C -0.09 -2.63 3.96 30.65 0.12 -2.51 16 26 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.01 8.13 -2.38 -0.02 0.99 16 28 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 29 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.03 0.68 6.65 -2.39 -0.02 0.66 16 32 H 0.10 1.85 8.06 -2.39 -0.02 1.83 16 33 H 0.08 2.29 6.32 -2.39 -0.02 2.28 16 34 H 0.11 2.25 8.06 -2.39 -0.02 2.24 16 35 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.04 1.30 6.46 -2.39 -0.02 1.28 16 37 H -0.02 -1.20 8.14 -2.39 -0.02 -1.21 16 38 H -0.02 -1.20 8.14 -2.38 -0.02 -1.22 16 39 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.06 2.08 5.18 -2.38 -0.01 2.07 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.07 2.18 8.04 -2.39 -0.02 2.16 16 Total: -1.00 -67.76 345.03 3.30 -64.46 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.96 Total: 12.23 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 5.07 Total: -5.81 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -3.80 Total: -73.71 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.96 Total: -43.49 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -67.76 3.30 -64.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933168591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.781 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds