Wall clock time and date at job start Tue Mar 31 2020 06:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.58584 * 2 1 4 4 C 1.53198 * 109.70420 * 120.35470 * 2 1 3 5 5 C 1.53031 * 109.31102 * 174.48867 * 4 2 1 6 6 C 1.53040 * 109.54115 * 298.63411 * 5 4 2 7 7 H 1.08994 * 109.49691 * 301.41432 * 6 5 4 8 8 O 1.42900 * 109.49577 * 181.34893 * 6 5 4 9 9 C 1.34932 * 116.99802 * 150.00516 * 8 6 5 10 10 H 1.07993 * 119.99947 * 359.97438 * 9 8 6 11 11 C 1.38635 * 120.00006 * 179.97438 * 9 8 6 12 12 N 1.31579 * 120.00355 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99920 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46944 * 60.00086 * 13 11 9 15 15 H 1.48498 * 109.47318 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47375 * 300.00257 * 13 11 9 17 17 C 1.52764 * 109.38088 * 61.24463 * 6 5 4 18 18 N 1.46928 * 109.58267 * 239.71331 * 2 1 3 19 19 C 1.34769 * 120.63127 * 6.44087 * 18 2 1 20 20 O 1.21514 * 120.00192 * 354.91120 * 19 18 2 21 21 O 1.34641 * 119.99944 * 175.18352 * 19 18 2 22 22 C 1.45194 * 117.00254 * 179.72424 * 21 19 18 23 23 C 1.53004 * 109.47214 * 60.00071 * 22 21 19 24 24 C 1.53002 * 109.47197 * 180.02562 * 22 21 19 25 25 C 1.53003 * 109.47023 * 300.00005 * 22 21 19 26 26 H 1.09000 * 109.47350 * 176.16849 * 1 2 3 27 27 H 1.09008 * 109.47083 * 296.16593 * 1 2 3 28 28 H 1.09001 * 109.47029 * 56.16480 * 1 2 3 29 29 H 1.09004 * 109.49512 * 294.44423 * 4 2 1 30 30 H 1.09001 * 109.49499 * 54.50490 * 4 2 1 31 31 H 1.09004 * 109.46134 * 58.66046 * 5 4 2 32 32 H 1.08998 * 109.46295 * 178.61177 * 5 4 2 33 33 H 0.96992 * 120.00600 * 180.02562 * 12 11 9 34 34 H 1.08998 * 109.50270 * 185.70676 * 17 6 5 35 35 H 1.09000 * 109.43383 * 65.42135 * 17 6 5 36 36 H 1.08999 * 109.47035 * 60.00132 * 23 22 21 37 37 H 1.09001 * 109.47185 * 179.97438 * 23 22 21 38 38 H 1.09000 * 109.46802 * 300.00074 * 23 22 21 39 39 H 1.09002 * 109.46932 * 60.00191 * 24 22 21 40 40 H 1.09006 * 109.46801 * 179.97438 * 24 22 21 41 41 H 1.08999 * 109.47241 * 299.99983 * 24 22 21 42 42 H 1.09007 * 109.46966 * 60.00407 * 25 22 21 43 43 H 1.09006 * 109.47236 * 179.97438 * 25 22 21 44 44 H 1.08994 * 109.47177 * 300.00117 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7289 1.2446 5 6 3.5705 -0.8444 1.1673 6 6 3.9601 -1.6609 -0.0670 7 1 3.5036 -2.6489 -0.0086 8 8 5.3818 -1.7948 -0.1210 9 6 5.8703 -2.9124 -0.6980 10 1 5.1940 -3.6562 -1.0925 11 6 7.2404 -3.1060 -0.7842 12 7 8.0644 -2.1995 -0.3039 13 14 7.9166 -4.6536 -1.5823 14 1 7.4546 -4.7261 -2.9917 15 1 9.4008 -4.6194 -1.5495 16 1 7.4319 -5.8453 -0.8406 17 6 3.4647 -0.9475 -1.3238 18 7 2.0225 -0.6981 -1.1954 19 6 1.1669 -1.1069 -2.1531 20 8 -0.0309 -0.9824 -1.9912 21 8 1.6393 -1.6581 -3.2871 22 6 0.6600 -2.0809 -4.2722 23 6 -0.1702 -0.8748 -4.7162 24 6 1.3798 -2.6788 -5.4827 25 6 -0.2615 -3.1351 -3.6554 26 1 -0.3634 -1.0253 -0.0687 27 1 -0.3634 0.4532 0.9224 28 1 -0.3633 0.5722 -0.8536 29 1 1.7689 -0.1672 2.1365 30 1 1.6075 -1.7255 1.2909 31 1 4.0071 0.1519 1.0964 32 1 3.9430 -1.3408 2.0634 33 1 9.0229 -2.3347 -0.3646 34 1 3.6509 -1.5747 -2.1955 35 1 3.9911 0.0006 -1.4339 36 1 0.4863 -0.1238 -5.1557 37 1 -0.9050 -1.1921 -5.4561 38 1 -0.6829 -0.4493 -3.8536 39 1 1.9709 -3.5381 -5.1660 40 1 0.6445 -2.9966 -6.2221 41 1 2.0365 -1.9281 -5.9223 42 1 -0.7743 -2.7095 -2.7928 43 1 -0.9970 -3.4522 -4.3948 44 1 0.3299 -3.9943 -3.3390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224381962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:51 Heat of formation + Delta-G solvation = -127.885391 kcal Electronic energy + Delta-G solvation = -24526.848361 eV Core-core repulsion = 21058.605484 eV Total energy + Delta-G solvation = -3468.242877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.10952 -40.06538 -38.43426 -36.99215 -35.29756 -34.09713 -33.46169 -32.33728 -28.33352 -28.30910 -28.20086 -26.81157 -25.42819 -24.03972 -22.40675 -21.47184 -20.31802 -19.66568 -18.52162 -17.80386 -17.31547 -17.13119 -16.59578 -15.96312 -15.77749 -15.52414 -15.46855 -15.11169 -14.56667 -14.48678 -14.34093 -14.02162 -13.59695 -13.34173 -13.27388 -13.16120 -13.11499 -13.04456 -12.79864 -12.71883 -12.57065 -12.43658 -12.21356 -12.08667 -11.98903 -11.91067 -11.69326 -11.52901 -11.29583 -11.17484 -10.33758 -10.23087 -9.60560 -8.17500 -5.86848 1.17539 1.39441 1.46091 1.53065 1.75619 2.31483 2.75079 3.15421 3.57681 3.77344 3.80935 3.83595 3.89213 3.94217 3.97259 4.17045 4.23763 4.36294 4.50659 4.60184 4.63247 4.65624 4.73440 4.77284 4.81617 4.84394 4.88056 4.88433 4.94572 4.99564 5.09397 5.13435 5.21761 5.23746 5.30242 5.31826 5.36490 5.39974 5.50715 5.65711 6.21127 6.36086 7.25502 7.31697 8.01981 9.06169 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.005755 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.736802 B = 4864.514272 C = 6376.052942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.149 3.851 3 H 0.088 0.912 4 C -0.114 4.114 5 C -0.111 4.111 6 C 0.083 3.917 7 H 0.029 0.971 8 O -0.317 6.317 9 C -0.375 4.375 10 H 0.066 0.934 11 C -0.035 4.035 12 N -0.935 5.935 13 Si 0.997 3.003 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.266 1.266 17 C 0.110 3.890 18 N -0.589 5.589 19 C 0.649 3.351 20 O -0.570 6.570 21 O -0.381 6.381 22 C 0.120 3.880 23 C -0.173 4.173 24 C -0.138 4.138 25 C -0.176 4.176 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.114 0.886 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.261 0.739 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.468 1.971 -5.620 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 H 0.106 0.894 4 C -0.152 4.152 5 C -0.149 4.149 6 C 0.023 3.977 7 H 0.047 0.953 8 O -0.232 6.232 9 C -0.453 4.453 10 H 0.084 0.916 11 C -0.229 4.229 12 N -0.579 5.579 13 Si 0.819 3.181 14 H -0.190 1.190 15 H -0.202 1.202 16 H -0.191 1.191 17 C -0.014 4.014 18 N -0.330 5.330 19 C 0.405 3.595 20 O -0.462 6.462 21 O -0.297 6.297 22 C 0.084 3.916 23 C -0.230 4.230 24 C -0.195 4.195 25 C -0.233 4.233 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.133 0.867 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.127 0.873 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.561 2.148 -5.549 18.542 hybrid contribution 0.701 -0.833 -0.392 1.157 sum -16.860 1.315 -5.941 17.924 Atomic orbital electron populations 1.22071 0.91325 1.02948 1.01552 1.21585 0.96420 0.95301 0.81825 0.89364 1.21960 0.93252 1.01614 0.98340 1.21552 0.96450 1.00330 0.96528 1.22185 0.83795 0.96900 0.94780 0.95313 1.85645 1.17192 1.41611 1.78708 1.21225 0.91411 0.96796 1.35916 0.91590 1.26089 0.95271 1.02108 0.99444 1.70160 1.02763 1.36539 1.48482 0.84948 0.77352 0.77094 0.78677 1.19003 1.20233 1.19086 1.21962 0.79010 1.00714 0.99688 1.47200 1.06377 1.59553 1.19908 1.18193 0.84141 0.76927 0.80281 1.90909 1.13894 1.61257 1.80123 1.86390 1.42413 1.73523 1.27340 1.22431 0.87566 0.95225 0.86363 1.22426 1.00494 0.97085 1.03019 1.21900 1.01648 1.01058 0.94933 1.22442 0.99960 0.97784 1.03085 0.92588 0.90910 0.92119 0.86749 0.92017 0.91261 0.91836 0.93018 0.91019 0.91462 0.92533 0.88773 0.91280 0.92307 0.87309 0.91734 0.91339 0.88667 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.99 7.60 71.98 0.55 -2.44 16 2 C 0.15 4.04 3.49 44.98 0.16 4.20 16 3 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.11 -2.98 5.38 30.67 0.16 -2.82 16 5 C -0.11 -3.88 5.54 30.62 0.17 -3.71 16 6 C 0.08 3.63 2.79 30.53 0.09 3.72 16 7 H 0.03 1.31 7.80 -2.39 -0.02 1.29 16 8 O -0.32 -18.08 9.43 -82.01 -0.77 -18.85 16 9 C -0.37 -21.98 9.78 67.91 0.66 -21.31 16 10 H 0.07 3.69 7.64 -2.91 -0.02 3.66 16 11 C -0.04 -2.07 5.49 84.83 0.47 -1.61 16 12 N -0.94 -58.88 13.67 21.61 0.30 -58.58 16 13 Si 1.00 45.02 29.55 68.60 2.03 47.05 16 14 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 17 C 0.11 4.34 6.03 86.22 0.52 4.86 16 18 N -0.59 -19.71 2.98 -926.04 -2.76 -22.47 16 19 C 0.65 21.90 7.64 129.79 0.99 22.89 16 20 O -0.57 -18.55 7.28 19.80 0.14 -18.40 16 21 O -0.38 -12.76 8.55 -55.51 -0.47 -13.23 16 22 C 0.12 3.04 1.13 -10.79 -0.01 3.03 16 23 C -0.17 -3.85 8.37 71.98 0.60 -3.25 16 24 C -0.14 -2.83 8.85 71.98 0.64 -2.19 16 25 C -0.18 -4.16 8.37 71.98 0.60 -3.56 16 26 H 0.06 1.58 6.73 -2.39 -0.02 1.56 16 27 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.06 1.63 6.76 -2.39 -0.02 1.61 16 29 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 34 H 0.07 3.08 6.96 -2.39 -0.02 3.06 16 35 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.82 5.88 -2.39 -0.01 1.80 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 1.90 5.88 -2.38 -0.01 1.88 16 43 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -70.59 343.20 5.02 -65.57 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.96 Total: 21.11 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 5.60 Total: -2.19 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -2.46 Total: -81.05 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -1.10 Total: -50.49 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -70.59 5.02 -65.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.315 kcal (2) G-P(sol) polarization free energy of solvation -70.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds