Wall clock time and date at job start Tue Mar 31 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99848 * 2 1 4 4 O 1.20820 * 120.00166 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99816 * 179.97438 * 3 2 1 6 6 N 1.46901 * 108.85306 * 314.77542 * 5 3 2 7 7 C 1.46905 * 111.00099 * 55.68585 * 6 5 3 8 8 C 1.52997 * 109.47186 * 171.78434 * 7 6 5 9 9 H 1.09006 * 109.46859 * 59.99950 * 8 7 6 10 10 O 1.42897 * 109.47120 * 300.00571 * 8 7 6 11 11 C 1.50696 * 109.47307 * 180.02562 * 8 7 6 12 12 H 1.08006 * 119.99538 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00225 * 180.02562 * 11 8 7 14 14 N 1.31515 * 119.99799 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 120.00000 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.46897 * 269.99367 * 15 13 11 17 17 H 1.48496 * 109.47162 * 29.99301 * 15 13 11 18 18 H 1.48502 * 109.47119 * 149.99950 * 15 13 11 19 19 C 1.50471 * 108.79908 * 73.28766 * 5 3 2 20 20 C 1.54238 * 108.52987 * 214.87340 * 19 5 3 21 21 C 1.45546 * 112.40465 * 280.02032 * 20 19 5 22 22 C 1.54243 * 112.40674 * 61.93005 * 21 20 19 23 23 C 1.50478 * 108.51804 * 280.00892 * 22 21 20 24 24 C 1.54062 * 112.49463 * 94.15694 * 23 22 21 25 25 H 1.08995 * 109.47171 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47182 * 300.00999 * 1 2 3 27 27 H 1.09007 * 109.46408 * 60.00552 * 1 2 3 28 28 H 1.00898 * 110.99913 * 291.73351 * 6 5 3 29 29 H 1.08996 * 109.46777 * 51.78790 * 7 6 5 30 30 H 1.09003 * 109.46899 * 291.78747 * 7 6 5 31 31 H 0.96700 * 113.99639 * 299.99556 * 10 8 7 32 32 H 0.97000 * 120.00370 * 0.02562 * 14 13 11 33 33 H 1.09003 * 109.62893 * 334.58594 * 19 5 3 34 34 H 1.09007 * 109.62681 * 95.15896 * 19 5 3 35 35 H 1.08997 * 108.89714 * 159.26257 * 20 19 5 36 36 H 1.09004 * 108.88985 * 40.76988 * 20 19 5 37 37 H 1.08996 * 108.89085 * 301.18308 * 21 20 19 38 38 H 1.08997 * 108.81822 * 182.63604 * 21 20 19 39 39 H 1.09002 * 109.62481 * 160.30189 * 22 21 20 40 40 H 1.08998 * 109.62992 * 39.72060 * 22 21 20 41 41 H 1.08997 * 108.87532 * 333.37955 * 23 22 21 42 42 H 1.08999 * 108.87297 * 214.92902 * 23 22 21 43 43 H 1.08999 * 108.81316 * 197.42268 * 24 23 22 44 44 H 1.09006 * 108.73071 * 79.08367 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 7 4.0913 0.3221 0.9878 7 6 3.6003 -1.0365 0.7211 8 6 4.3227 -2.0284 1.6349 9 1 4.1295 -1.7702 2.6762 10 8 5.7281 -1.9718 1.3830 11 6 3.8195 -3.4222 1.3609 12 1 3.0606 -3.5843 0.6097 13 6 4.3278 -4.4904 2.0691 14 7 5.2522 -4.2929 2.9835 15 14 3.7045 -6.2182 1.7289 16 1 2.5432 -6.5075 2.6081 17 1 3.2875 -6.3230 0.3075 18 1 4.7872 -7.1975 2.0008 19 6 4.0726 0.8909 -1.3634 20 6 5.4076 0.1367 -1.1964 21 6 6.5307 1.0374 -0.9827 22 6 6.3807 1.8682 0.3082 23 6 5.4503 3.0180 0.0312 24 6 3.9908 2.6989 0.4076 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 3.8622 0.6115 1.9269 29 1 3.7934 -1.2947 -0.3201 30 1 2.5282 -1.0796 0.9133 31 1 5.9737 -2.1905 0.4737 32 1 5.5762 -3.3958 3.1599 33 1 3.3458 0.2443 -1.8551 34 1 4.2315 1.7886 -1.9611 35 1 5.5942 -0.4536 -2.0935 36 1 5.3280 -0.5369 -0.3431 37 1 6.6054 1.7160 -1.8324 38 1 7.4461 0.4492 -0.9196 39 1 7.3550 2.2507 0.6126 40 1 5.9658 1.2438 1.0994 41 1 5.4958 3.2605 -1.0305 42 1 5.7807 3.8847 0.6036 43 1 3.3355 3.4159 -0.0871 44 1 3.8763 2.8051 1.4864 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930156607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:49 Heat of formation + Delta-G solvation = -127.238777 kcal Electronic energy + Delta-G solvation = -25323.200458 eV Core-core repulsion = 21854.985620 eV Total energy + Delta-G solvation = -3468.214838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 285.177 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16811 -38.86937 -36.65080 -36.02163 -34.21118 -32.34358 -32.01363 -30.63824 -27.83150 -27.49533 -24.96446 -24.75576 -23.30880 -21.63457 -20.81198 -19.96159 -18.92877 -17.70556 -17.19801 -16.97475 -16.44883 -15.64234 -15.01644 -14.69840 -14.24344 -14.04785 -13.76869 -13.58349 -13.37108 -13.12990 -13.04739 -12.77300 -12.66367 -12.18545 -12.06117 -11.94055 -11.55412 -11.45032 -11.16541 -10.78977 -10.77535 -10.61565 -10.49214 -10.29843 -10.12795 -10.08425 -10.04512 -9.90048 -9.68443 -9.13817 -8.45321 -8.09906 -7.82850 -6.33135 -4.16536 2.25265 2.80233 3.41468 3.44630 3.60676 4.36450 4.56449 4.60331 4.76161 4.88552 5.15880 5.19394 5.22774 5.29487 5.36732 5.37805 5.46578 5.54016 5.57404 5.65930 5.83882 5.96804 5.98519 6.04302 6.12812 6.19510 6.24905 6.29900 6.33579 6.49268 6.53137 6.55925 6.67725 6.83515 6.94855 7.11295 7.26672 7.43740 7.64451 7.84735 8.04664 8.38623 8.88527 9.20131 9.69136 11.07084 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.016887 B = 0.006349 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.706476 B = 4409.017812 C = 5517.661733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.333 6.333 3 C 0.425 3.575 4 O -0.519 6.519 5 C 0.136 3.864 6 N -0.645 5.645 7 C 0.013 3.987 8 C 0.221 3.779 9 H 0.044 0.956 10 O -0.570 6.570 11 C -0.648 4.648 12 H 0.049 0.951 13 C 0.035 3.965 14 N -0.893 5.893 15 Si 1.067 2.933 16 H -0.289 1.289 17 H -0.289 1.289 18 H -0.285 1.285 19 C -0.102 4.102 20 C -0.135 4.135 21 C -0.099 4.099 22 C -0.130 4.130 23 C -0.105 4.105 24 C -0.099 4.099 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.337 0.663 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.350 0.650 32 H 0.285 0.715 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.123 0.877 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.108 0.892 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 11.539 -7.592 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.249 6.249 3 C 0.266 3.734 4 O -0.406 6.406 5 C 0.043 3.957 6 N -0.276 5.276 7 C -0.114 4.114 8 C 0.164 3.836 9 H 0.061 0.939 10 O -0.374 6.374 11 C -0.686 4.686 12 H 0.067 0.933 13 C -0.174 4.174 14 N -0.528 5.528 15 Si 0.896 3.104 16 H -0.216 1.216 17 H -0.216 1.216 18 H -0.210 1.210 19 C -0.140 4.140 20 C -0.172 4.172 21 C -0.136 4.136 22 C -0.168 4.168 23 C -0.143 4.143 24 C -0.137 4.137 25 H 0.119 0.881 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.156 0.844 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.195 0.805 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.141 0.859 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.126 0.874 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.564 10.334 -6.829 12.649 hybrid contribution -1.708 1.653 -0.857 2.527 sum -4.272 11.987 -7.686 14.867 Atomic orbital electron populations 1.23290 0.78361 1.03681 1.01837 1.87105 1.22339 1.32367 1.83101 1.26115 0.93924 0.81588 0.71759 1.90584 1.67651 1.36668 1.45736 1.21001 0.82320 0.95375 0.97048 1.61096 1.59292 1.02485 1.04748 1.23503 0.99059 0.86531 1.02262 1.19461 0.78612 0.91977 0.93583 0.93861 1.86499 1.26210 1.92223 1.32482 1.22426 1.27106 0.93123 1.25972 0.93281 1.25716 0.94475 1.04029 0.93153 1.70600 1.25451 1.27039 1.29713 0.83598 0.75944 0.75309 0.75583 1.21583 1.21551 1.21032 1.21382 0.98888 1.00718 0.93017 1.20772 0.92426 0.99914 1.04090 1.20275 0.98416 0.98093 0.96862 1.21561 0.98005 0.97128 1.00075 1.21234 0.93568 0.98623 1.00873 1.21930 0.97489 0.92640 1.01631 0.88103 0.92307 0.92415 0.84422 0.90614 0.91687 0.80494 0.90283 0.91851 0.91316 0.93501 0.85929 0.94212 0.92688 0.93340 0.87355 0.92648 0.92494 0.90635 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.56 101.05 1.07 1.35 16 2 O -0.33 -5.31 6.58 -39.26 -0.26 -5.56 16 3 C 0.43 6.77 6.43 36.01 0.23 7.01 16 4 O -0.52 -9.03 15.29 -18.74 -0.29 -9.32 16 5 C 0.14 1.96 0.53 -133.46 -0.07 1.89 16 6 N -0.64 -10.19 2.23 -101.86 -0.23 -10.42 16 7 C 0.01 0.25 3.26 -3.82 -0.01 0.24 16 8 C 0.22 5.17 2.69 -27.89 -0.08 5.10 16 9 H 0.04 1.12 8.01 -51.93 -0.42 0.70 16 10 O -0.57 -13.29 11.16 -35.23 -0.39 -13.68 16 11 C -0.65 -17.21 8.76 -34.44 -0.30 -17.51 16 12 H 0.05 1.30 7.74 -52.48 -0.41 0.89 16 13 C 0.04 0.98 5.40 -17.82 -0.10 0.88 16 14 N -0.89 -26.55 13.53 55.43 0.75 -25.80 16 15 Si 1.07 24.52 29.90 -169.99 -5.08 19.44 16 16 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.10 -1.41 4.26 -27.35 -0.12 -1.52 16 20 C -0.13 -1.92 4.48 -29.60 -0.13 -2.05 16 21 C -0.10 -1.30 5.26 -29.60 -0.16 -1.45 16 22 C -0.13 -1.70 5.61 -27.34 -0.15 -1.86 16 23 C -0.11 -1.24 5.31 -27.44 -0.15 -1.38 16 24 C -0.10 -1.28 4.66 -25.62 -0.12 -1.40 16 25 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 27 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 28 H 0.34 5.34 8.51 -39.29 -0.33 5.01 16 29 H 0.08 1.44 5.55 -51.93 -0.29 1.15 16 30 H 0.07 1.29 5.12 -52.18 -0.27 1.02 16 31 H 0.35 7.54 7.97 45.56 0.36 7.90 16 32 H 0.29 8.60 6.47 -40.82 -0.26 8.33 16 33 H 0.06 0.91 7.48 -51.93 -0.39 0.52 16 34 H 0.07 0.87 6.98 -51.92 -0.36 0.50 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.12 2.01 2.21 -51.93 -0.11 1.90 16 37 H 0.04 0.48 7.47 -51.93 -0.39 0.09 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.11 1.64 5.57 -51.93 -0.29 1.35 16 41 H 0.05 0.62 6.63 -51.93 -0.34 0.28 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.01 7.13 -51.93 -0.37 0.64 16 44 H 0.06 0.83 7.84 -51.93 -0.41 0.43 16 LS Contribution 324.90 15.07 4.90 4.90 Total: -1.00 -29.75 324.90 -6.72 -36.46 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: -6.03 Total: 14.70 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -0.08 Total: -10.71 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.52 Total: -36.22 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.94 Total: -28.56 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.08 Total: 19.44 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.75 -6.72 -36.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930156607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.776 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds