Wall clock time and date at job start Tue Mar 31 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52833 * 1 3 3 H 1.11121 * 106.62646 * 2 1 4 4 C 1.51518 * 111.72770 * 242.92962 * 2 1 3 5 5 C 1.51858 * 115.73617 * 277.85137 * 4 2 1 6 6 C 1.54407 * 108.01221 * 197.59348 * 5 4 2 7 7 C 1.53116 * 111.03191 * 80.05456 * 5 4 2 8 8 C 1.52482 * 112.43851 * 316.31892 * 5 4 2 9 9 C 1.52645 * 110.80079 * 52.58353 * 8 5 4 10 10 C 1.52258 * 110.59878 * 115.94242 * 2 1 3 11 11 H 1.09383 * 109.43586 * 194.73683 * 10 2 1 12 12 N 1.47126 * 109.56403 * 313.88119 * 10 2 1 13 13 C 1.46901 * 110.99977 * 206.41337 * 12 10 2 14 14 C 1.52996 * 109.47485 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47425 * 179.97438 * 14 13 12 16 16 S 1.81000 * 109.47287 * 179.97438 * 15 14 13 17 17 C 1.76196 * 100.00031 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00305 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00114 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99603 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00098 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46919 * 89.99733 * 21 19 17 23 23 H 1.48499 * 109.47176 * 209.99553 * 21 19 17 24 24 H 1.48504 * 109.47061 * 329.99989 * 21 19 17 25 25 H 1.09000 * 109.47267 * 304.05869 * 1 2 3 26 26 H 1.09002 * 109.46528 * 64.06144 * 1 2 3 27 27 H 1.08996 * 109.47376 * 184.05326 * 1 2 3 28 28 H 1.10244 * 108.74448 * 155.43923 * 4 2 1 29 29 H 1.10214 * 108.79687 * 40.37845 * 4 2 1 30 30 H 1.09005 * 109.46692 * 181.68990 * 6 5 4 31 31 H 1.08996 * 109.46913 * 301.68171 * 6 5 4 32 32 H 1.08998 * 109.47239 * 61.68741 * 6 5 4 33 33 H 1.08995 * 109.47330 * 294.88480 * 7 5 4 34 34 H 1.09002 * 109.46872 * 54.88497 * 7 5 4 35 35 H 1.09000 * 109.46894 * 174.87740 * 7 5 4 36 36 H 1.09306 * 109.41016 * 291.99380 * 8 5 4 37 37 H 1.09303 * 109.40887 * 173.16008 * 8 5 4 38 38 H 1.09538 * 108.99103 * 179.60995 * 9 8 5 39 39 H 1.08556 * 110.74270 * 60.19835 * 9 8 5 40 40 H 1.00896 * 111.00225 * 330.36717 * 12 10 2 41 41 H 1.09004 * 109.46958 * 299.99791 * 13 12 10 42 42 H 1.09000 * 109.46890 * 59.99703 * 13 12 10 43 43 H 1.08995 * 109.47025 * 300.00152 * 14 13 12 44 44 H 1.09000 * 109.47279 * 59.99966 * 14 13 12 45 45 H 1.08995 * 109.47205 * 300.00118 * 15 14 13 46 46 H 1.08997 * 109.47122 * 60.00234 * 15 14 13 47 47 H 0.96999 * 119.99751 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5283 0.0000 0.0000 3 1 1.8463 1.0648 0.0000 4 6 2.0892 -0.6405 -1.2533 5 6 2.1598 -2.1575 -1.2437 6 6 3.1343 -2.5972 -2.3577 7 6 0.7940 -2.7731 -1.5600 8 6 2.6865 -2.7072 0.0774 9 6 1.8954 -2.1414 1.2539 10 6 2.0640 -0.6235 1.2816 11 1 3.1258 -0.3831 1.3872 12 7 1.3378 -0.0746 2.4375 13 6 2.1637 -0.1269 3.6512 14 6 1.3768 0.4517 4.8289 15 6 2.2367 0.3966 6.0932 16 16 1.3060 1.0818 7.4862 17 6 2.4988 0.8998 8.7701 18 1 3.4645 0.4679 8.5529 19 6 2.1973 1.3116 10.0610 20 7 1.0205 1.8385 10.3257 21 14 3.4622 1.1194 11.4221 22 1 4.3016 2.3423 11.4941 23 1 2.7672 0.9190 12.7190 24 1 4.3234 -0.0559 11.1351 25 1 -0.3634 0.5755 0.8514 26 1 -0.3632 0.4495 -0.9242 27 1 -0.3634 -1.0250 0.0726 28 1 3.1024 -0.2440 -1.4309 29 1 1.4824 -0.3227 -2.1167 30 1 3.1799 -3.6858 -2.3917 31 1 2.7836 -2.2183 -3.3176 32 1 4.1272 -2.1982 -2.1503 33 1 0.0914 -2.5272 -0.7638 34 1 0.4259 -2.3744 -2.5053 35 1 0.8924 -3.8560 -1.6362 36 1 3.7403 -2.4391 0.1881 37 1 2.6027 -3.7970 0.0766 38 1 2.2928 -2.5600 2.1849 39 1 0.8459 -2.4072 1.1749 40 1 1.0243 0.8666 2.2538 41 1 2.4299 -1.1620 3.8652 42 1 3.0710 0.4576 3.4988 43 1 1.1109 1.4868 4.6147 44 1 0.4692 -0.1324 4.9815 45 1 2.5022 -0.6386 6.3072 46 1 3.1444 0.9805 5.9409 47 1 0.8097 2.1260 11.2278 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120799876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:33 Heat of formation + Delta-G solvation = -48.330077 kcal Electronic energy + Delta-G solvation = -20630.071838 eV Core-core repulsion = 17743.864704 eV Total energy + Delta-G solvation = -2886.207134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.182 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03935 -36.59722 -33.97544 -32.41403 -32.12922 -30.58430 -27.81846 -26.82067 -26.12269 -25.43514 -23.91530 -22.49350 -21.01224 -20.27493 -18.04429 -17.41264 -16.04312 -15.73956 -15.22107 -14.85049 -14.78393 -14.70128 -14.22038 -14.06670 -13.73319 -13.23343 -12.99350 -12.92285 -12.54364 -12.46171 -12.31511 -12.13189 -11.97382 -11.68226 -11.51926 -11.29668 -11.24165 -11.06193 -11.04922 -11.00020 -10.78023 -10.59717 -10.47328 -10.33829 -10.14426 -10.01607 -9.47748 -9.03669 -8.35898 -8.26866 -6.49781 -6.20514 -3.90337 3.22885 3.23794 3.30492 3.58461 4.11051 4.25193 4.33114 4.41824 4.58933 4.82521 4.84068 5.00668 5.10254 5.15331 5.20723 5.26630 5.34527 5.36995 5.38266 5.43284 5.47211 5.55010 5.57983 5.60001 5.67966 5.71297 5.73984 5.79781 5.83958 5.87488 5.89553 5.94885 5.98849 6.01270 6.15084 6.18236 6.25608 6.34224 6.36961 6.40716 6.65152 6.79321 7.13623 7.44563 7.62778 8.38988 9.25694 10.87702 Molecular weight = 285.18amu Principal moments of inertia in cm(-1) A = 0.040042 B = 0.002475 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.095730 B =11309.025936 C =11666.569717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 H 0.056 0.944 4 C -0.095 4.095 5 C -0.057 4.057 6 C -0.146 4.146 7 C -0.143 4.143 8 C -0.106 4.106 9 C -0.105 4.105 10 C 0.096 3.904 11 H 0.038 0.962 12 N -0.684 5.684 13 C 0.064 3.936 14 C -0.095 4.095 15 C -0.111 4.111 16 S -0.133 6.133 17 C -0.516 4.516 18 H 0.072 0.928 19 C 0.070 3.930 20 N -0.870 5.870 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.339 0.661 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.820 -7.106 -25.577 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.074 0.926 4 C -0.133 4.133 5 C -0.057 4.057 6 C -0.204 4.204 7 C -0.200 4.200 8 C -0.144 4.144 9 C -0.143 4.143 10 C -0.013 4.013 11 H 0.056 0.944 12 N -0.316 5.316 13 C -0.067 4.067 14 C -0.134 4.134 15 C -0.261 4.261 16 S 0.095 5.905 17 C -0.664 4.664 18 H 0.090 0.910 19 C -0.139 4.139 20 N -0.505 5.505 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.158 0.842 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.339 -7.170 -25.249 26.249 hybrid contribution 2.781 0.161 0.707 2.874 sum 3.120 -7.008 -24.542 25.713 Atomic orbital electron populations 1.21814 0.94287 1.02561 1.01162 1.20943 0.96799 0.98878 0.93922 0.92577 1.21232 1.00947 0.94097 0.96980 1.20364 0.95626 0.94674 0.95079 1.22292 0.98866 1.01052 0.98150 1.22024 0.96506 1.00090 1.01421 1.21473 0.99401 0.99901 0.93668 1.21367 1.01129 0.94375 0.97447 1.21327 0.95375 0.95242 0.89381 0.94354 1.60644 1.40889 1.27377 1.02681 1.22065 0.94103 1.00827 0.89679 1.21236 0.98826 1.01205 0.92092 1.23218 1.01483 1.02840 0.98537 1.84625 1.24463 1.80798 1.00631 1.22693 1.01626 1.47467 0.94597 0.91017 1.25021 0.96061 0.94663 0.98108 1.70027 1.20404 1.39027 1.21091 0.86169 0.80504 0.78657 0.80218 1.20303 1.20750 1.19702 0.91812 0.93494 0.92055 0.92734 0.92138 0.92763 0.92924 0.92909 0.91833 0.93008 0.92960 0.92371 0.92017 0.92303 0.90888 0.84180 0.91210 0.95635 0.91936 0.90774 0.92176 0.92440 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.57 37.07 0.32 -0.90 16 2 C -0.09 -0.75 2.15 -91.83 -0.20 -0.95 16 3 H 0.06 0.49 8.29 -50.71 -0.42 0.07 16 4 C -0.09 -0.73 4.12 -28.06 -0.12 -0.85 16 5 C -0.06 -0.43 0.71 -154.56 -0.11 -0.54 16 6 C -0.15 -0.98 8.08 37.90 0.31 -0.67 16 7 C -0.14 -1.04 8.02 37.22 0.30 -0.74 16 8 C -0.11 -0.89 4.52 -27.18 -0.12 -1.02 16 9 C -0.11 -1.05 5.13 -27.04 -0.14 -1.18 16 10 C 0.10 0.99 2.24 -68.10 -0.15 0.83 16 11 H 0.04 0.43 7.77 -51.71 -0.40 0.02 16 12 N -0.68 -8.05 5.55 -106.96 -0.59 -8.64 16 13 C 0.06 0.87 5.47 -3.83 -0.02 0.85 16 14 C -0.09 -1.58 5.48 -26.73 -0.15 -1.73 16 15 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 16 S -0.13 -3.56 21.44 -107.50 -2.30 -5.86 16 17 C -0.52 -15.02 9.50 30.94 0.29 -14.73 16 18 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 19 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 20 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 21 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H 0.06 0.60 6.74 -51.93 -0.35 0.25 16 26 H 0.05 0.36 8.06 -51.93 -0.42 -0.05 16 27 H 0.06 0.55 4.98 -51.93 -0.26 0.30 16 28 H 0.05 0.42 7.94 -51.22 -0.41 0.02 16 29 H 0.06 0.44 7.87 -51.24 -0.40 0.04 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.06 0.50 4.76 -51.93 -0.25 0.25 16 34 H 0.05 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.50 8.11 -51.76 -0.42 0.08 16 37 H 0.06 0.49 8.13 -51.76 -0.42 0.07 16 38 H 0.06 0.65 7.43 -51.62 -0.38 0.26 16 39 H 0.07 0.76 6.21 -52.18 -0.32 0.44 16 40 H 0.34 3.79 7.34 -39.29 -0.29 3.50 16 41 H 0.07 0.97 7.38 -51.93 -0.38 0.59 16 42 H 0.03 0.35 8.04 -51.93 -0.42 -0.07 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 46 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 364.55 15.07 5.49 5.49 Total: -1.00 -30.22 364.55 -10.25 -40.47 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -8.89 Total: -0.86 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 0.33 Total: -21.78 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.14 Total: -34.21 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.30 Total: -5.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.22 -10.25 -40.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120799876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.861 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds